UHGV-0135158

Genome information

Genome length 33,033 bps

CDS count 48

Completeness 86.28% (medium-quality)

geNomad score 0.9760

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135158
vOTU ID	vOTU-018721
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_354413
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9760
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.35
Jumbo phage	No

Genome content
Genome length	33,033 bps
GC content	37.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	90.46%
Average CDS length	624.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135158_1	UniRef90	UniRef90_A0A3D4QCC8	GGGtGRT protein	NA
UHGV-0135158_1	eggNOG-mapper	511680.BUTYVIB_00397	GGGtGRT protein	NA
UHGV-0135158_1	Pfam	PF14057	GGGtGRT protein	GGGtGRT
UHGV-0135158_1	Structural annotation	PF14057, NF002646, COG0246	NA	NA
UHGV-0135158_2	KOfam	K14059	int; integrase	NA
UHGV-0135158_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0135158_2	UniRef90	UniRef90_A0A7C9H3C8	Tyrosine-type recombinase/integrase	NA
UHGV-0135158_2	eggNOG-mapper	1235792.C808_01553	Phage integrase family	NA
UHGV-0135158_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0135158_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0135158_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0135158_3	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0135158_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0135158_3	UniRef90	UniRef90_A0A7C9H3W9	Helix-turn-helix domain-containing protein	NA
UHGV-0135158_3	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-0135158_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0135158_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135158_3	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0135158_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0135158_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0135158_4	UniRef90	UniRef90_A0A350VVA1	XRE family transcriptional regulator	NA
UHGV-0135158_4	eggNOG-mapper	641107.CDLVIII_1309	Helix-turn-helix XRE-family like proteins	NA
UHGV-0135158_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135158_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0135158_4	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0135158_6	Structural annotation	PF21662, NF038384, TIGR03090	NA	NA
UHGV-0135158_9	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0135158_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0135158_9	UniRef90	UniRef90_UPI000E48696E	helix-turn-helix domain-containing protein	NA
UHGV-0135158_9	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0135158_9	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0135158_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135158_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0135158_9	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0135158_14	PHROG	phrog_6058	NA	unknown function
UHGV-0135158_14	UniRef90	UniRef90_A0A3A9SV11	DNA-binding protein	NA
UHGV-0135158_14	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-0135158_14	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0135158_16	PHROG	phrog_24368	NA	unknown function
UHGV-0135158_17	UniRef90	UniRef90_A0A7C9HA55	NA	NA
UHGV-0135158_17	Pfam	PF19789	NA	DUF6273
UHGV-0135158_17	Structural annotation	PF19789	NA	NA
UHGV-0135158_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0135158_19	eggNOG-mapper	397290.C810_00404	NA	NA
UHGV-0135158_19	Structural annotation	PF21578	NA	NA
UHGV-0135158_20	PHROG	phrog_824	NA	unknown function
UHGV-0135158_20	UniRef90	UniRef90_A0A7C9H491	VRR-NUC domain-containing protein	NA
UHGV-0135158_20	eggNOG-mapper	397290.C810_00407	VRR_NUC	NA
UHGV-0135158_20	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0135158_20	Structural annotation	PF08774	NA	NA
UHGV-0135158_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0135158_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0135158_21	UniRef90	UniRef90_E7GTS2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0135158_21	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0135158_21	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0135158_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0135158_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0135158_21	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0135158_22	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0135158_22	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0135158_22	UniRef90	UniRef90_A0A7C9H418	AAA family ATPase	NA
UHGV-0135158_22	eggNOG-mapper	397288.C806_00082	AAA domain	NA
UHGV-0135158_22	Pfam	PF13614	AAA domain	AAA_31
UHGV-0135158_22	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0135158_22	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0135158_23	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0135158_23	PHROG	phrog_15982	NA	unknown function
UHGV-0135158_23	UniRef90	UniRef90_A0A7C9HAH3	NA	NA
UHGV-0135158_23	eggNOG-mapper	411470.RUMGNA_02052	NA	NA
UHGV-0135158_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0135158_23	Pfam	PF12961	NA	DUF3850
UHGV-0135158_23	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0135158_23	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0135158_24	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0135158_24	Structural annotation	PF06530, TIGR02937, COG2739	NA	NA
UHGV-0135158_25	PHROG	phrog_1129	holin	lysis
UHGV-0135158_25	UniRef90	UniRef90_UPI000485FFFD	phage holin family protein	NA
UHGV-0135158_25	eggNOG-mapper	537013.CLOSTMETH_03774	NA	NA
UHGV-0135158_25	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0135158_26	PHROG	phrog_1863	NA	unknown function
UHGV-0135158_26	eggNOG-mapper	665956.HMPREF1032_03922	NA	NA
UHGV-0135158_27	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0135158_27	UniRef90	UniRef90_A0A3D0FZE1	Transposase	NA
UHGV-0135158_27	eggNOG-mapper	1033743.CAES01000078_gene3713	transposase activity	NA
UHGV-0135158_27	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0135158_27	Structural annotation	PF07141	NA	NA
UHGV-0135158_28	UniRef90	UniRef90_A0A3B9G289	Peptidase C51 domain-containing protein	NA
UHGV-0135158_28	eggNOG-mapper	411473.RUMCAL_03176	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0135158_28	Pfam	PF05257	CHAP domain	CHAP
UHGV-0135158_28	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0135158_28	Structural annotation	TIGR02594, COG3942	NA	NA
UHGV-0135158_30	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0135158_30	UniRef90	UniRef90_R5W1L1	HNH domain-containing protein	NA
UHGV-0135158_30	eggNOG-mapper	1123288.SOV_2c03680	adenylate kinase activity	NA
UHGV-0135158_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0135158_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0135158_30	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0135158_31	PHROG	phrog_1066	NA	unknown function
UHGV-0135158_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0135158_32	UniRef90	UniRef90_R7A0H4	Terminase	NA
UHGV-0135158_32	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0135158_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0135158_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0135158_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0135158_32	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0135158_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0135158_33	UniRef90	UniRef90_A0A3R6X642	Phage portal protein	NA
UHGV-0135158_33	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0135158_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0135158_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0135158_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0135158_34	KOfam	K06904	NA	NA
UHGV-0135158_34	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0135158_34	UniRef90	UniRef90_R5W1K4	Putative phage prohead protease	NA
UHGV-0135158_34	eggNOG-mapper	1123263.AUKY01000046_gene468	Phage prohead protease, HK97 family	NA
UHGV-0135158_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0135158_34	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0135158_34	COG	COG3740	Phage head maturation protease	NA
UHGV-0135158_34	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0135158_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0135158_35	UniRef90	UniRef90_A0A6N7SRR9	Phage major capsid protein	NA
UHGV-0135158_35	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0135158_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0135158_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0135158_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0135158_35	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0135158_37	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0135158_38	UniRef90	UniRef90_A0A417W8T5	Head-tail adaptor protein	NA
UHGV-0135158_38	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0135158_38	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0135158_38	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0135158_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0135158_39	Structural annotation	TIGR01725	NA	NA
UHGV-0135158_40	Structural annotation	PF05657	NA	NA
UHGV-0135158_41	PHROG	phrog_88	major tail protein	tail
UHGV-0135158_41	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0135158_41	eggNOG-mapper	394503.Ccel_2828	phage major tail protein, phi13 family	NA
UHGV-0135158_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0135158_41	COG	COG5492	NA	NA
UHGV-0135158_41	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0135158_43	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0135158_43	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0135158_43	UniRef90	UniRef90_UPI001EDCC813	phage tail tape measure protein	NA
UHGV-0135158_43	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0135158_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0135158_43	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0135158_43	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0135158_44	UniRef90	UniRef90_A0A415G8B5	Phage tail family protein	NA
UHGV-0135158_44	eggNOG-mapper	641112.ACOK01000108_gene1808	Phage tail protein	NA
UHGV-0135158_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0135158_44	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0135158_46	PHROG	phrog_36410	NA	unknown function
UHGV-0135158_46	eggNOG-mapper	706433.HMPREF9430_01256	Phage tail protein	NA
UHGV-0135158_47	PHROG	phrog_538	minor tail protein	tail
UHGV-0135158_47	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0135158_47	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0135158_47	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0135158_47	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0135158_48	PHROG	phrog_1220	head protein	head and packaging
UHGV-0135158_48	eggNOG-mapper	1230342.CTM_17042	COG NOG18825 non supervised orthologous group	NA
UHGV-0135158_48	Structural annotation	PF20747	NA	NA