UHGV-0135177

Genome information

Genome length 36,811 bps

CDS count 55

Completeness 91.91% (high-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135177
vOTU ID	vOTU-072381
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_384683
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.91% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.74
Jumbo phage	No

Genome content
Genome length	36,811 bps
GC content	42.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	92.02%
Average CDS length	620.46 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135177_1	KOfam	K14059	int; integrase	NA
UHGV-0135177_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0135177_1	UniRef90	UniRef90_A0A2Z4UCR8	Tyr recombinase domain-containing protein	NA
UHGV-0135177_1	eggNOG-mapper	33035.JPJF01000091_gene89	Phage integrase family	NA
UHGV-0135177_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0135177_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0135177_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0135177_2	PHROG	phrog_1847	NA	unknown function
UHGV-0135177_2	UniRef90	UniRef90_A0A174D4Z6	T5orf172 domain	NA
UHGV-0135177_2	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0135177_2	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0135177_2	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0135177_2	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0135177_3	PHROG	phrog_20886	NA	unknown function
UHGV-0135177_3	UniRef90	UniRef90_UPI000C757FC8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0135177_3	eggNOG-mapper	476272.RUMHYD_02825	NA	NA
UHGV-0135177_3	Structural annotation	PF06114	NA	NA
UHGV-0135177_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0135177_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0135177_4	UniRef90	UniRef90_A0A6N2UVR0	HTH-type transcriptional regulator Xre	NA
UHGV-0135177_4	eggNOG-mapper	411462.DORLON_00819	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0135177_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135177_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0135177_4	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0135177_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0135177_5	UniRef90	UniRef90_UPI001E32C9FE	helix-turn-helix domain-containing protein	NA
UHGV-0135177_5	eggNOG-mapper	1536772.R70723_06540	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0135177_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135177_5	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0135177_6	UniRef90	UniRef90_A0A415G6W5	Winged helix-turn-helix domain-containing protein	NA
UHGV-0135177_6	Structural annotation	PF20063	NA	NA
UHGV-0135177_7	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0135177_7	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0135177_7	Structural annotation	PF01446	NA	NA
UHGV-0135177_11	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0135177_11	UniRef90	UniRef90_A0A2Z4UCZ0	RNase H type-1 domain-containing protein	NA
UHGV-0135177_11	eggNOG-mapper	1028803.GG9_0166	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0135177_11	Pfam	PF00075	RNase H	RNase_H
UHGV-0135177_11	COG	COG0328	Ribonuclease HI	NA
UHGV-0135177_11	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0135177_12	eggNOG-mapper	1235800.C819_00510	NA	NA
UHGV-0135177_13	PHROG	phrog_7566	NA	unknown function
UHGV-0135177_13	eggNOG-mapper	97139.C824_00037	NA	NA
UHGV-0135177_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0135177_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0135177_14	UniRef90	UniRef90_A0A2Z4UEP8	Single-stranded DNA-binding protein	NA
UHGV-0135177_14	eggNOG-mapper	537007.BLAHAN_04317	NA	NA
UHGV-0135177_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0135177_14	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0135177_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0135177_14	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0135177_14	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0135177_15	PHROG	phrog_17690	NA	unknown function
UHGV-0135177_15	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0135177_15	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0135177_16	eggNOG-mapper	411468.CLOSCI_00555	NA	NA
UHGV-0135177_18	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0135177_18	UniRef90	UniRef90_C0CTA2	Phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0135177_18	eggNOG-mapper	33035.JPJF01000123_gene2435	NA	NA
UHGV-0135177_18	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0135177_18	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0135177_19	PHROG	phrog_37410	NA	unknown function
UHGV-0135177_20	UniRef90	UniRef90_UPI001C0CED42	toxin PIN	NA
UHGV-0135177_20	eggNOG-mapper	411470.RUMGNA_02044	NA	NA
UHGV-0135177_20	Structural annotation	PF02185	NA	NA
UHGV-0135177_27	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0135177_27	UniRef90	UniRef90_A0A6N2U0G1	ASCH domain-containing protein	NA
UHGV-0135177_27	eggNOG-mapper	1234679.BN424_2153	NA	NA
UHGV-0135177_27	Pfam	PF12961	NA	DUF3850
UHGV-0135177_27	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0135177_28	PHROG	phrog_19011	NA	unknown function
UHGV-0135177_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0135177_29	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0135177_29	eggNOG-mapper	476272.RUMHYD_02841	NA	NA
UHGV-0135177_29	Structural annotation	PF02996	NA	NA
UHGV-0135177_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0135177_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0135177_31	UniRef90	UniRef90_A0A6N7XHE4	Terminase small subunit	NA
UHGV-0135177_31	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0135177_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0135177_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0135177_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0135177_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0135177_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0135177_32	UniRef90	UniRef90_UPI0011DD220B	PBSX family phage terminase large subunit	NA
UHGV-0135177_32	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0135177_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0135177_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0135177_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0135177_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0135177_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0135177_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0135177_33	UniRef90	UniRef90_UPI0011DE18DB	phage portal protein	NA
UHGV-0135177_33	eggNOG-mapper	1232453.BAIF02000011_gene3353	Phage portal protein, SPP1 family	NA
UHGV-0135177_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0135177_33	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0135177_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0135177_34	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0135177_34	UniRef90	UniRef90_A0A2N5P5J9	Phage_Mu_F domain-containing protein	NA
UHGV-0135177_34	eggNOG-mapper	476272.RUMHYD_02847	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0135177_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0135177_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0135177_34	COG	COG2369	NA	NA
UHGV-0135177_34	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0135177_35	KOfam	K07584	NA	NA
UHGV-0135177_35	PHROG	phrog_4478	peptidase	other
UHGV-0135177_35	UniRef90	UniRef90_UPI00051BA76D	ribosomal-processing cysteine protease Prp	NA
UHGV-0135177_35	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0135177_35	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0135177_35	COG	COG2868	NA	NA
UHGV-0135177_35	Structural annotation	PF04327, NF011122, COG2868	NA	NA
UHGV-0135177_36	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0135177_36	UniRef90	UniRef90_UPI00051C87DC	NA	NA
UHGV-0135177_36	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-0135177_36	Pfam	PF14265	NA	DUF4355
UHGV-0135177_36	Structural annotation	PF14265	NA	NA
UHGV-0135177_37	PHROG	phrog_544	major head protein	head and packaging
UHGV-0135177_37	UniRef90	UniRef90_A0A174MF51	S-l_SbsC_C domain-containing protein	NA
UHGV-0135177_37	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0135177_37	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0135177_37	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0135177_38	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0135177_38	UniRef90	UniRef90_UPI001D03FC16	phage head-tail connector protein	NA
UHGV-0135177_38	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0135177_38	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0135177_38	Structural annotation	PF05135	NA	NA
UHGV-0135177_39	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0135177_39	eggNOG-mapper	476272.RUMHYD_02857	NA	NA
UHGV-0135177_39	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0135177_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0135177_40	UniRef90	UniRef90_UPI001E557200	HK97 gp10 family phage protein	NA
UHGV-0135177_40	eggNOG-mapper	1235798.C817_03473	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0135177_40	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0135177_40	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0135177_40	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0135177_41	PHROG	phrog_176	tail terminator	connector
UHGV-0135177_41	UniRef90	UniRef90_UPI001E62787A	NA	NA
UHGV-0135177_41	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0135177_41	Structural annotation	PF11367	NA	NA
UHGV-0135177_42	PHROG	phrog_238	major tail protein	tail
UHGV-0135177_42	UniRef90	UniRef90_A0A3E3JYD1	Phage major tail protein, TP901-1 family	NA
UHGV-0135177_42	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-0135177_42	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0135177_42	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0135177_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0135177_43	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0135177_43	UniRef90	UniRef90_A0A4R3K6Z9	Tail assembly chaperone	NA
UHGV-0135177_43	eggNOG-mapper	1215915.BN193_09065	Phage tail assembly chaperone protein, TAC	NA
UHGV-0135177_43	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0135177_43	Structural annotation	PF12363	NA	NA
UHGV-0135177_44	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0135177_44	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-0135177_45	PHROG	phrog_1204	tail protein	tail
UHGV-0135177_45	UniRef90	UniRef90_UPI001E448465	tape measure protein	NA
UHGV-0135177_45	eggNOG-mapper	646413.C5IUK3_9CAUD	transmembrane transport	NA
UHGV-0135177_45	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0135177_45	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0135177_46	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0135177_46	UniRef90	UniRef90_UPI00051B486B	phage tail family protein	NA
UHGV-0135177_46	eggNOG-mapper	556261.HMPREF0240_01280	Phage tail protein	NA
UHGV-0135177_46	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0135177_46	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0135177_46	COG	COG4722	Phage-related protein YomH	NA
UHGV-0135177_46	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0135177_47	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0135177_47	UniRef90	UniRef90_A0A3E2WEC8	Prophage_tail domain-containing protein	NA
UHGV-0135177_47	eggNOG-mapper	1235798.C817_03466	NA	NA
UHGV-0135177_47	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0135177_47	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0135177_47	Structural annotation	PF14594, PF19081, MF_04116, TIGR01665, NF041894, COG4926	NA	NA
UHGV-0135177_48	PHROG	phrog_16164	NA	unknown function
UHGV-0135177_48	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0135177_48	Structural annotation	PF17813, NF032891	NA	NA
UHGV-0135177_49	eggNOG-mapper	931276.Cspa_c27110	NA	NA
UHGV-0135177_50	PHROG	phrog_199	holin	lysis
UHGV-0135177_50	UniRef90	UniRef90_UPI00156E32FD	phage holin family protein	NA
UHGV-0135177_50	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-0135177_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0135177_50	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0135177_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0135177_51	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0135177_51	PHROG	phrog_435	endolysin	lysis
UHGV-0135177_51	UniRef90	UniRef90_F7KTY1	MurNAc-LAA domain-containing protein	NA
UHGV-0135177_51	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0135177_51	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0135177_51	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0135177_51	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0135177_51	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0135177_52	KOfam	K14059	int; integrase	NA
UHGV-0135177_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0135177_52	UniRef90	UniRef90_UPI00164A4E4A	site-specific integrase	NA
UHGV-0135177_52	eggNOG-mapper	1382358.JHVN01000005_gene3032	Phage integrase family	NA
UHGV-0135177_52	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0135177_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0135177_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0135177_52	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0135177_54	UniRef90	UniRef90_U2CXQ8	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0135177_54	eggNOG-mapper	203119.Cthe_1750	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0135177_54	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0135177_54	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA