UHGV-0135246

Genome information

vOTU vOTU-020834

Genome length 32,672 bps

CDS count 48

Completeness 86.95% (medium-quality)

geNomad score 0.9756

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135246
vOTU ID	vOTU-020834
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_370654
BioSample	SAMN03295847
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9756
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.79
Jumbo phage	No

Genome content
Genome length	32,672 bps
GC content	31.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.01%
Average CDS length	628.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135246_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0135246_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0135246_1	UniRef90	UniRef90_UPI000D971AB3	recombinase family protein	NA
UHGV-0135246_1	eggNOG-mapper	1415774.U728_786	Resolvase, N terminal domain	NA
UHGV-0135246_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0135246_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0135246_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0135246_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0135246_1	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-0135246_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0135246_2	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0135246_2	UniRef90	UniRef90_D9SNT2	Helix-turn-helix domain protein	NA
UHGV-0135246_2	eggNOG-mapper	994573.T472_0216440	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0135246_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0135246_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135246_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0135246_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0135246_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135246_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0135246_4	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0135246_4	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0135246_4	UniRef90	UniRef90_UPI000C079E58	phage antirepressor	NA
UHGV-0135246_4	eggNOG-mapper	1415774.U728_781	Phage antirepressor protein KilAC domain	NA
UHGV-0135246_4	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0135246_4	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0135246_4	COG	COG3617	Prophage antirepressor	NA
UHGV-0135246_4	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0135246_5	PHROG	phrog_17705	NA	unknown function
UHGV-0135246_5	Structural annotation	PF11195	NA	NA
UHGV-0135246_7	PHROG	phrog_11013	NA	unknown function
UHGV-0135246_7	UniRef90	UniRef90_A0A2A7WNW1	DNA-entry nuclease	NA
UHGV-0135246_7	eggNOG-mapper	445335.CBN_3011	NA	NA
UHGV-0135246_8	PHROG	phrog_14105	NA	unknown function
UHGV-0135246_8	UniRef90	UniRef90_UPI000C077CF9	PPE family protein	NA
UHGV-0135246_8	eggNOG-mapper	268407.PWYN_12330	dextransucrase activity	NA
UHGV-0135246_8	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0135246_8	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0135246_10	PHROG	phrog_10625	NA	unknown function
UHGV-0135246_10	Structural annotation	PF14634	NA	NA
UHGV-0135246_12	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0135246_12	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0135246_12	UniRef90	UniRef90_UPI0016029EDE	recombinase RecT	NA
UHGV-0135246_12	eggNOG-mapper	1499683.CCFF01000013_gene498	RecT family	NA
UHGV-0135246_12	Pfam	PF03837	RecT family	RecT
UHGV-0135246_12	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0135246_12	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0135246_12	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0135246_13	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0135246_13	UniRef90	UniRef90_UPI0016003DC3	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0135246_13	eggNOG-mapper	1415774.U728_1702	NA	NA
UHGV-0135246_13	Pfam	PF12684	NA	DUF3799
UHGV-0135246_13	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0135246_13	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0135246_14	Structural annotation	PF11680	NA	NA
UHGV-0135246_15	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0135246_15	UniRef90	UniRef90_UPI00189C8A81	helix-turn-helix domain-containing protein	NA
UHGV-0135246_15	eggNOG-mapper	508419.F8J194_9CAUD	Helix-turn-helix domain	NA
UHGV-0135246_15	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0135246_15	Structural annotation	PF13730, NF040939, COG3355	NA	NA
UHGV-0135246_16	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0135246_16	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0135246_16	UniRef90	UniRef90_A0A4Q0VED6	DNA helicase	NA
UHGV-0135246_16	eggNOG-mapper	1414720.CBYM010000018_gene3020	DnaB-like helicase N terminal domain	NA
UHGV-0135246_16	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0135246_16	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0135246_16	COG	COG0305	Replicative DNA helicase	NA
UHGV-0135246_16	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0135246_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0135246_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0135246_18	UniRef90	UniRef90_UPI000C087C34	single-stranded DNA-binding protein	NA
UHGV-0135246_18	eggNOG-mapper	1391647.AVSV01000022_gene2534	Single-stranded DNA-binding protein	NA
UHGV-0135246_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0135246_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0135246_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0135246_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0135246_18	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0135246_19	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0135246_19	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0135246_19	UniRef90	UniRef90_UPI0014599578	site-specific DNA-methyltransferase	NA
UHGV-0135246_19	eggNOG-mapper	397291.C804_00949	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0135246_19	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0135246_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0135246_19	COG	COG0863	DNA modification methylase	NA
UHGV-0135246_19	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0135246_21	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0135246_21	UniRef90	UniRef90_UPI000EA2D745	ERCC4 domain-containing protein	NA
UHGV-0135246_21	eggNOG-mapper	1443122.Z958_05760	ERCC4 domain	NA
UHGV-0135246_21	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0135246_21	Structural annotation	PF02732, NF040956	NA	NA
UHGV-0135246_22	UniRef90	UniRef90_UPI000C077448	metallophosphoesterase family protein	NA
UHGV-0135246_22	Pfam	PF12850	Calcineurin-like phosphoesterase superfamily domain	Metallophos_2
UHGV-0135246_24	PHROG	phrog_236	nucleotide kinase	other
UHGV-0135246_24	UniRef90	UniRef90_UPI001A9A39DC	NA	NA
UHGV-0135246_24	eggNOG-mapper	1033743.CAES01000020_gene3148	NA	NA
UHGV-0135246_24	Pfam	PF11753	NA	DUF3310
UHGV-0135246_27	PHROG	phrog_10157	NA	unknown function
UHGV-0135246_27	UniRef90	UniRef90_UPI000C076F29	helix-turn-helix domain-containing protein	NA
UHGV-0135246_27	Structural annotation	PF04545, MF_00674, NF009180, COG2771	NA	NA
UHGV-0135246_28	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0135246_28	UniRef90	UniRef90_UPI000C0728F3	phBC6A51 family helix-turn-helix protein	NA
UHGV-0135246_28	eggNOG-mapper	1391647.AVSV01000022_gene2554	NA	NA
UHGV-0135246_28	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0135246_28	Structural annotation	PF13022, COG3677	NA	NA
UHGV-0135246_30	PHROG	phrog_11978	NA	unknown function
UHGV-0135246_30	UniRef90	UniRef90_A0A0C1R0Y0	Putative 6-phospho-beta-glucosidase BglA	NA
UHGV-0135246_30	eggNOG-mapper	1123405.AUMM01000039_gene155	TIGRFAM Phage	NA
UHGV-0135246_30	COG	COG5362	Phage terminase large subunit	NA
UHGV-0135246_30	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0135246_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0135246_31	UniRef90	UniRef90_A0A174QMT8	Phage portal protein	NA
UHGV-0135246_31	eggNOG-mapper	1499683.CCFF01000017_gene2144	portal protein, SPP1 Gp6-like	NA
UHGV-0135246_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0135246_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0135246_32	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0135246_32	UniRef90	UniRef90_UPI000C06D26A	minor capsid protein	NA
UHGV-0135246_32	eggNOG-mapper	1499683.CCFF01000005_gene66	Phage Mu protein F like protein	NA
UHGV-0135246_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0135246_32	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0135246_32	COG	COG2369	NA	NA
UHGV-0135246_32	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0135246_33	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0135246_33	UniRef90	UniRef90_UPI00082CC29D	NA	NA
UHGV-0135246_33	eggNOG-mapper	1499683.CCFF01000017_gene2146	NA	NA
UHGV-0135246_33	Pfam	PF14265	NA	DUF4355
UHGV-0135246_33	Structural annotation	PF14265	NA	NA
UHGV-0135246_34	PHROG	phrog_544	major head protein	head and packaging
UHGV-0135246_34	UniRef90	UniRef90_A0A6M0WT90	N4-gp56 family major capsid protein	NA
UHGV-0135246_34	eggNOG-mapper	1499683.CCFF01000017_gene2147	NA	NA
UHGV-0135246_34	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0135246_34	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0135246_35	eggNOG-mapper	1499683.CCFF01000005_gene71	NA	NA
UHGV-0135246_36	eggNOG-mapper	1391647.AVSV01000022_gene2564	NA	NA
UHGV-0135246_36	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0135246_37	UniRef90	UniRef90_UPI000EA091A2	HK97 gp10 family phage protein	NA
UHGV-0135246_37	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0135246_37	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0135246_38	Structural annotation	PF20765	NA	NA
UHGV-0135246_39	PHROG	phrog_885	major tail protein	tail
UHGV-0135246_39	eggNOG-mapper	1123309.AQYB01000018_gene816	NA	NA
UHGV-0135246_39	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0135246_42	PHROG	phrog_15478	tail length tape measure protein	tail
UHGV-0135246_42	eggNOG-mapper	1280689.AUJC01000011_gene1530	tape measure	NA
UHGV-0135246_42	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0135246_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0135246_43	UniRef90	UniRef90_UPI000C0747FD	phage tail family protein	NA
UHGV-0135246_43	eggNOG-mapper	573061.Clocel_0222	tail component	NA
UHGV-0135246_43	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0135246_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-0135246_43	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0135246_44	PHROG	phrog_7043	tail protein	tail
UHGV-0135246_44	UniRef90	UniRef90_UPI000EA2B1DE	phage tail protein	NA
UHGV-0135246_44	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0135246_44	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0135246_44	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0135246_44	COG	COG4926	Phage-related protein	NA
UHGV-0135246_44	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0135246_46	PHROG	phrog_16573	NA	unknown function
UHGV-0135246_46	UniRef90	UniRef90_UPI0018AA7D36	BppU family phage baseplate upper protein	NA
UHGV-0135246_46	eggNOG-mapper	1280689.AUJC01000011_gene1533	NA	NA
UHGV-0135246_46	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0135246_46	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0135246_48	KOfam	K13663	gumF; acyltransferase [EC:2.3.1.-]	NA
UHGV-0135246_48	UniRef90	UniRef90_A0A401USA1	Acyl_transf_3 domain-containing protein	NA
UHGV-0135246_48	eggNOG-mapper	904293.HMPREF9176_1517	Acyltransferase family	NA
UHGV-0135246_48	Pfam	PF01757	Acyltransferase family	Acyl_transf_3
UHGV-0135246_48	COG	COG4763	NA	NA