UHGV-0135275

Genome information

Genome length 22,503 bps

CDS count 44

Completeness 50.41% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135275
vOTU ID	vOTU-031313
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_394397
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.41% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.27
Jumbo phage	No

Genome content
Genome length	22,503 bps
GC content	65.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	93.45%
Average CDS length	480.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135275_2	eggNOG-mapper	1211115.ALIQ01000188_gene655	NA	NA
UHGV-0135275_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0135275_3	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0135275_3	UniRef90	UniRef90_A0A2Y9UBM3	Terminase_3 domain-containing protein	NA
UHGV-0135275_3	eggNOG-mapper	399795.CtesDRAFT_PD3195	TIGRFAM phage terminase, large subunit, PBSX family	NA
UHGV-0135275_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0135275_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0135275_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0135275_4	PHROG	phrog_1482	terminase small subunit	head and packaging
UHGV-0135275_4	UniRef90	UniRef90_UPI0013DA6FD2	ubiquitin carboxyl-hydrolase	NA
UHGV-0135275_4	eggNOG-mapper	1088721.NSU_0753	NA	NA
UHGV-0135275_4	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-0135275_4	Structural annotation	PF20901	NA	NA
UHGV-0135275_9	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0135275_9	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0135275_9	eggNOG-mapper	160492.XF_1666	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0135275_9	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0135275_9	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0135275_11	PHROG	phrog_1588	NA	unknown function
UHGV-0135275_11	eggNOG-mapper	1269813.ATUL01000006_gene1825	Recombination enhancement, RecA-dependent nuclease	NA
UHGV-0135275_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0135275_14	UniRef90	UniRef90_A0A2W6GUM7	NinB family protein	NA
UHGV-0135275_14	eggNOG-mapper	1168549.I6R9D0_9CAUD	NinB protein	NA
UHGV-0135275_14	Pfam	PF05772	NinB protein	NinB
UHGV-0135275_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0135275_17	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0135275_17	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0135275_17	UniRef90	UniRef90_A0A2W6HXP3	Replicative DNA helicase	NA
UHGV-0135275_17	eggNOG-mapper	340.xcc-b100_2864	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0135275_17	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0135275_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0135275_17	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0135275_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-0135275_17	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0135275_18	PHROG	phrog_16167	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0135275_18	UniRef90	UniRef90_UPI001561E283	HNH endonuclease	NA
UHGV-0135275_18	eggNOG-mapper	743721.Psesu_1149	DnaD domain protein	NA
UHGV-0135275_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0135275_18	Structural annotation	PF20024, NF041413, COG0735	NA	NA
UHGV-0135275_19	UniRef90	UniRef90_A0A2W5LMR5	XRE family transcriptional regulator	NA
UHGV-0135275_21	UniRef90	UniRef90_UPI00066AAADD	helix-turn-helix transcriptional regulator	NA
UHGV-0135275_21	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0135275_22	UniRef90	UniRef90_UPI000AAEA9FD	dihydrodipicolinate synthase family protein	NA
UHGV-0135275_30	PHROG	phrog_1376	NA	unknown function
UHGV-0135275_30	UniRef90	UniRef90_UPI00112F68BD	cell envelope biogenesis protein TolA	NA
UHGV-0135275_30	eggNOG-mapper	571.MC52_14995	NA	NA
UHGV-0135275_31	PHROG	phrog_2449	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0135275_31	UniRef90	UniRef90_A0A2Y9UCZ9	Phage recombination protein Bet	NA
UHGV-0135275_31	eggNOG-mapper	160492.XF_1648	TIGRFAM Phage recombination protein Bet	NA
UHGV-0135275_31	Pfam	PF03837	RecT family	RecT
UHGV-0135275_31	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0135275_32	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0135275_32	UniRef90	UniRef90_A0A2W6K1C4	Recombinase	NA
UHGV-0135275_32	eggNOG-mapper	351746.Pput_1922	YqaJ-like viral recombinase domain	NA
UHGV-0135275_32	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0135275_32	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0135275_33	UniRef90	UniRef90_UPI0006597C77	sigma-70 region 4 domain-containing protein	NA
UHGV-0135275_35	UniRef90	UniRef90_A0A3G1L3I3	NA	NA
UHGV-0135275_35	Structural annotation	NF041588	NA	NA
UHGV-0135275_36	Pfam	PF20661	NA	DUF6813
UHGV-0135275_38	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0135275_41	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0135275_43	PHROG	phrog_8896	excisionase	integration and excision
UHGV-0135275_43	UniRef90	UniRef90_A0A246I5H3	NA	NA
UHGV-0135275_43	eggNOG-mapper	1552758.NC00_01465	ORF located using Glimmer RBSfinder	NA
UHGV-0135275_43	Pfam	PF13986	NA	DUF4224
UHGV-0135275_44	KOfam	K21039	int; enterobacteria phage integrase [EC:2.7.7.- 3.1.-.-]	NA
UHGV-0135275_44	PHROG	phrog_1	integrase	integration and excision
UHGV-0135275_44	UniRef90	UniRef90_A0A0L8A643	Integrase	NA
UHGV-0135275_44	eggNOG-mapper	1552758.NC00_01470	Belongs to the 'phage' integrase family	NA
UHGV-0135275_44	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0135275_44	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0135275_44	Structural annotation	PF00589, PF09003, PF02899, MF_01808, TIGR02224, COG4974	NA	NA