UHGV-0135307

Genome information

Genome length 36,297 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135307
vOTU ID	vOTU-068369
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_382011
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.55
Jumbo phage	No

Genome content
Genome length	36,297 bps
GC content	41.90%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	91.21%
Average CDS length	629.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135307_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0135307_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0135307_1	UniRef90	UniRef90_A5KP69	Resolvase, N-terminal domain protein	NA
UHGV-0135307_1	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0135307_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0135307_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0135307_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0135307_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0135307_1	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0135307_2	PHROG	phrog_10934	NA	unknown function
UHGV-0135307_2	eggNOG-mapper	742722.HMPREF9463_00385	NA	NA
UHGV-0135307_3	KOfam	K10716	kch, trkA, mthK, pch; voltage-gated potassium channel	NA
UHGV-0135307_3	PHROG	phrog_7872	NA	unknown function
UHGV-0135307_3	UniRef90	UniRef90_D4M567	Ion channel	NA
UHGV-0135307_3	eggNOG-mapper	411459.RUMOBE_00964	Ion channel	NA
UHGV-0135307_3	Pfam	PF07885	Ion channel	Ion_trans_2
UHGV-0135307_3	COG	COG1226	Voltage-gated potassium channel Kch	NA
UHGV-0135307_3	Structural annotation	PF07885, NF040645	NA	NA
UHGV-0135307_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0135307_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0135307_5	UniRef90	UniRef90_A0A1Q6K9L5	Transcriptional regulator	NA
UHGV-0135307_5	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0135307_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135307_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0135307_5	Structural annotation	PF01381, NF041951, COG2944	NA	NA
UHGV-0135307_6	PHROG	phrog_14088	NA	unknown function
UHGV-0135307_6	UniRef90	UniRef90_A0A412MEV1	Carboxypeptidase	NA
UHGV-0135307_6	eggNOG-mapper	1256908.HMPREF0373_00648	NA	NA
UHGV-0135307_7	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0135307_7	UniRef90	UniRef90_A0A1C5SMN5	NA	NA
UHGV-0135307_7	eggNOG-mapper	1235802.C823_04729	NA	NA
UHGV-0135307_7	Pfam	PF13643	NA	DUF4145
UHGV-0135307_7	Structural annotation	PF13643	NA	NA
UHGV-0135307_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0135307_14	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-0135307_14	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0135307_15	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0135307_15	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0135307_15	UniRef90	UniRef90_A0A844KCI1	Ribonuclease HI	NA
UHGV-0135307_15	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-0135307_15	Pfam	PF00075	RNase H	RNase_H
UHGV-0135307_15	COG	COG0328	Ribonuclease HI	NA
UHGV-0135307_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0135307_16	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0135307_17	PHROG	phrog_4433	NA	unknown function
UHGV-0135307_17	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-0135307_18	PHROG	phrog_8470	NA	unknown function
UHGV-0135307_18	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-0135307_18	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0135307_18	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0135307_18	Structural annotation	PF14284	NA	NA
UHGV-0135307_19	PHROG	phrog_15077	NA	unknown function
UHGV-0135307_19	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0135307_19	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0135307_19	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0135307_20	eggNOG-mapper	1196322.A370_05726	NA	NA
UHGV-0135307_21	PHROG	phrog_7566	NA	unknown function
UHGV-0135307_21	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0135307_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0135307_27	UniRef90	UniRef90_UPI001899709D	NA	NA
UHGV-0135307_27	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0135307_27	Pfam	PF07374	NA	DUF1492
UHGV-0135307_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0135307_27	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0135307_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0135307_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0135307_28	UniRef90	UniRef90_D4M587	HNH endonuclease	NA
UHGV-0135307_28	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0135307_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0135307_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0135307_29	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0135307_29	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0135307_29	eggNOG-mapper	1220589.CD32_01745	Phage terminase, small subunit	NA
UHGV-0135307_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0135307_29	COG	COG5484	NA	NA
UHGV-0135307_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0135307_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0135307_30	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0135307_30	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0135307_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0135307_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0135307_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0135307_30	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0135307_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0135307_31	UniRef90	UniRef90_A0A844KEF3	Phage portal protein	NA
UHGV-0135307_31	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0135307_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0135307_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0135307_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0135307_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0135307_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0135307_32	UniRef90	UniRef90_D4M590	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0135307_32	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0135307_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0135307_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0135307_32	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0135307_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0135307_33	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-0135307_33	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0135307_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0135307_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0135307_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0135307_33	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0135307_34	PHROG	phrog_749	NA	unknown function
UHGV-0135307_35	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0135307_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0135307_36	Structural annotation	PF05657	NA	NA
UHGV-0135307_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0135307_37	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0135307_37	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0135307_37	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0135307_38	PHROG	phrog_88	major tail protein	tail
UHGV-0135307_38	UniRef90	UniRef90_D4M596	Phage major tail protein, phi13 family	NA
UHGV-0135307_38	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0135307_38	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0135307_38	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0135307_40	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0135307_40	UniRef90	UniRef90_A0A373N7M8	PhageMin_Tail domain-containing protein	NA
UHGV-0135307_40	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0135307_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0135307_40	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0135307_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0135307_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0135307_41	UniRef90	UniRef90_D4M599	Phage putative tail component, N-terminal domain	NA
UHGV-0135307_41	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0135307_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-0135307_41	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0135307_42	PHROG	phrog_13289	tail protein	tail
UHGV-0135307_42	UniRef90	UniRef90_A0A1Q6KA70	Prophage_tail domain-containing protein	NA
UHGV-0135307_42	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0135307_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0135307_42	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0135307_42	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0135307_42	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0135307_43	PHROG	phrog_11037	NA	unknown function
UHGV-0135307_43	UniRef90	UniRef90_A0A1Q6K9M8	NlpC/P60 domain-containing protein	NA
UHGV-0135307_43	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0135307_43	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0135307_43	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0135307_43	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0135307_43	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0135307_44	eggNOG-mapper	349123.Lreu23DRAFT_3172	NA	NA
UHGV-0135307_44	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0135307_46	PHROG	phrog_37799	NA	unknown function
UHGV-0135307_46	UniRef90	UniRef90_D4M5A5	Toxin secretion/phage lysis holin	NA
UHGV-0135307_46	eggNOG-mapper	610130.Closa_1414	toxin secretion phage lysis holin	NA
UHGV-0135307_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0135307_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0135307_46	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0135307_46	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0135307_47	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-0135307_48	KOfam	K07273	acm; lysozyme	NA
UHGV-0135307_48	PHROG	phrog_291	endolysin	lysis
UHGV-0135307_48	UniRef90	UniRef90_D4M5A7	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0135307_48	eggNOG-mapper	515620.EUBELI_01316	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-0135307_48	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0135307_48	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0135307_48	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0135307_49	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0135307_49	UniRef90	UniRef90_UPI00189B68C8	helix-turn-helix domain-containing protein	NA
UHGV-0135307_49	eggNOG-mapper	997296.PB1_16114	Protein conserved in bacteria	NA
UHGV-0135307_49	COG	COG1426	NA	NA
UHGV-0135307_49	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0135307_50	PHROG	phrog_1914	NA	unknown function
UHGV-0135307_50	UniRef90	UniRef90_UPI00156E07CD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0135307_50	eggNOG-mapper	1235802.C823_05682	NA	NA
UHGV-0135307_50	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0135307_50	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0135307_50	Structural annotation	PF06114, MF_00745, COG2856	NA	NA
UHGV-0135307_52	eggNOG-mapper	1123009.AUID01000044_gene2307	NA	NA
UHGV-0135307_53	PHROG	phrog_23452	NA	unknown function
UHGV-0135307_53	UniRef90	UniRef90_A0A174JNC4	Zinc D-Ala-D-Ala carboxypeptidase	NA
UHGV-0135307_53	eggNOG-mapper	1280698.AUJS01000010_gene819	Putative peptidoglycan binding domain	NA
UHGV-0135307_53	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA