UHGV-0135374

Genome information

Genome length 41,127 bps

CDS count 42

Completeness 99.35% (high-quality)

geNomad score 0.9673

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135374
vOTU ID	vOTU-014106
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_370755
BioSample	SAMN03295855
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.35% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9673
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	76.54
Jumbo phage	No

Genome content
Genome length	41,127 bps
GC content	38.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	90.65%
Average CDS length	891.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135374_1	KOfam	K14059	int; integrase	NA
UHGV-0135374_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0135374_1	UniRef90	UniRef90_E4LAC6	Site-specific recombinase, phage integrase family	NA
UHGV-0135374_1	eggNOG-mapper	910314.HMPREF9220_0756	Belongs to the 'phage' integrase family	NA
UHGV-0135374_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0135374_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0135374_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0135374_10	KOfam	K21313	1; T7 RNA polymerase [EC:2.7.7.6]	NA
UHGV-0135374_10	PHROG	phrog_414	RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0135374_10	UniRef90	UniRef90_A0A1M6MEA8	DNA-directed RNA polymerase	NA
UHGV-0135374_10	eggNOG-mapper	910314.HMPREF9220_0743	dna-directed rna polymerase	NA
UHGV-0135374_10	Pfam	PF14700	DNA-directed RNA polymerase N-terminal	RPOL_N
UHGV-0135374_10	Pfam	PF00940	DNA-dependent RNA polymerase	RNA_pol
UHGV-0135374_10	COG	COG5108	Mitochondrial DNA-directed RNA polymerase	NA
UHGV-0135374_10	Structural annotation	PF00940, PF14700, NF011539, COG5108	NA	NA
UHGV-0135374_12	PHROG	phrog_236	nucleotide kinase	other
UHGV-0135374_12	UniRef90	UniRef90_A0A1M6MEK4	NA	NA
UHGV-0135374_12	eggNOG-mapper	910314.HMPREF9220_0742	NA	NA
UHGV-0135374_12	Pfam	PF11753	NA	DUF3310
UHGV-0135374_12	Structural annotation	PF11753	NA	NA
UHGV-0135374_14	KOfam	K25280	gp2.5, ssb; T7 single-stranded DNA-binding protein	NA
UHGV-0135374_14	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0135374_14	UniRef90	UniRef90_UPI0010327CA7	NA	NA
UHGV-0135374_14	eggNOG-mapper	910314.HMPREF9220_0740	NA	NA
UHGV-0135374_14	Pfam	PF21265	Single-stranded DNA-binding protein, Bacteriophage T7	SBB_T7
UHGV-0135374_14	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0135374_15	KOfam	K21525	Gp3; endonuclease I [EC:3.1.21.2]	NA
UHGV-0135374_15	PHROG	phrog_945	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0135374_15	UniRef90	UniRef90_A0A1M6MF23	Phage endonuclease I	NA
UHGV-0135374_15	eggNOG-mapper	910314.HMPREF9220_0739	Phage endonuclease I	NA
UHGV-0135374_15	Pfam	PF05367	Phage endonuclease I	Phage_endo_I
UHGV-0135374_15	Structural annotation	PF05367, COG1787	NA	NA
UHGV-0135374_16	PHROG	phrog_822	amidase	lysis
UHGV-0135374_16	UniRef90	UniRef90_UPI000D61D0C4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0135374_16	eggNOG-mapper	575590.HMPREF0156_00190	NA	NA
UHGV-0135374_16	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0135374_17	KOfam	K21502	Gp4; DNA primase/helicase [EC:2.7.7.- 5.6.2.3]	NA
UHGV-0135374_17	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0135374_17	UniRef90	UniRef90_A0A1M6MES9	Twinkle protein	NA
UHGV-0135374_17	eggNOG-mapper	910314.HMPREF9220_0737	DNA primase activity	NA
UHGV-0135374_17	Pfam	PF21268	Bacteriophage T7 DNA helicase/primase, N-terminal a+b fold	Helic-prim_T7_N
UHGV-0135374_17	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0135374_17	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0135374_17	COG	COG0305	Replicative DNA helicase	NA
UHGV-0135374_17	HAMAP	MF_04154	DNA helicase/primase [4]	NA
UHGV-0135374_17	Structural annotation	PF03796, PF21268, MF_04154, NF005424, TIGR01391, COG0305	NA	NA
UHGV-0135374_18	KOfam	K21238	Gp5; T7 DNA-directed DNA polymerase [EC:2.7.7.7]	NA
UHGV-0135374_18	PHROG	phrog_15971	DNA polymerase I	DNA, RNA and nucleotide metabolism
UHGV-0135374_18	UniRef90	UniRef90_A0A1M6MFE6	DNA-directed DNA polymerase	NA
UHGV-0135374_18	eggNOG-mapper	910314.HMPREF9220_0734	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0135374_18	Pfam	PF13482	RNase_H superfamily	RNase_H_2
UHGV-0135374_18	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0135374_18	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0135374_18	Structural annotation	PF00476, PF13482, MF_04101, NF004397, COG0749	NA	NA
UHGV-0135374_21	KOfam	K21526	Gp6; exonuclease [EC:3.1.11.3]	NA
UHGV-0135374_21	PHROG	phrog_107	RNaseH	DNA, RNA and nucleotide metabolism
UHGV-0135374_21	UniRef90	UniRef90_A0A1M6MG40	DNA polymerase-1	NA
UHGV-0135374_21	eggNOG-mapper	910314.HMPREF9220_0733	nuclease activity	NA
UHGV-0135374_21	Pfam	PF02739	5'-3' exonuclease, N-terminal resolvase-like domain	5_3_exonuc_N
UHGV-0135374_21	COG	COG0258	5'-3' exonuclease Xni/ExoIX (flap endonuclease)	NA
UHGV-0135374_21	Structural annotation	PF02739, MF_04140, NF011544, COG0258	NA	NA
UHGV-0135374_25	PHROG	phrog_449	head-tail adaptor	connector
UHGV-0135374_25	UniRef90	UniRef90_A0A1M6MG79	Bacteriophage head to tail connecting protein	NA
UHGV-0135374_25	eggNOG-mapper	910314.HMPREF9220_0729	Bacteriophage head to tail connecting protein	NA
UHGV-0135374_25	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0135374_25	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0135374_26	PHROG	phrog_1052	head assembly	head and packaging
UHGV-0135374_26	UniRef90	UniRef90_A0A1M6MGQ8	Phage T7 capsid assembly protein	NA
UHGV-0135374_26	eggNOG-mapper	910314.HMPREF9220_0728	Phage T7 capsid assembly protein	NA
UHGV-0135374_26	Pfam	PF05396	Phage T7 capsid assembly protein	Phage_T7_Capsid
UHGV-0135374_26	Structural annotation	PF05396	NA	NA
UHGV-0135374_27	PHROG	phrog_267	major head protein	head and packaging
UHGV-0135374_27	UniRef90	UniRef90_A0A413R0P7	Phage capsid protein	NA
UHGV-0135374_27	eggNOG-mapper	910314.HMPREF9220_0727	NA	NA
UHGV-0135374_27	Pfam	PF21703	Major capsid protein	Gp10A-like
UHGV-0135374_27	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0135374_28	PHROG	phrog_446	tail protein	tail
UHGV-0135374_28	UniRef90	UniRef90_UPI0015593CFE	phage tail protein	NA
UHGV-0135374_28	eggNOG-mapper	910314.HMPREF9220_0726	Tail tubular protein	NA
UHGV-0135374_28	Pfam	PF17212	Tail tubular protein	Tube
UHGV-0135374_28	Structural annotation	PF17212	NA	NA
UHGV-0135374_29	PHROG	phrog_457	tail protein	tail
UHGV-0135374_29	UniRef90	UniRef90_A0A2Z2U7S2	Putative tail tubular protein B	NA
UHGV-0135374_29	eggNOG-mapper	910314.HMPREF9220_0725	NA	NA
UHGV-0135374_29	Structural annotation	PF11134, MF_00923, NF000022, COG4257	NA	NA
UHGV-0135374_30	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0135374_30	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-0135374_30	Structural annotation	PF13420, MF_02210, NF040504, COG0456	NA	NA
UHGV-0135374_31	PHROG	phrog_805	internal virion protein	head and packaging
UHGV-0135374_31	eggNOG-mapper	910314.HMPREF9220_0723	NA	NA
UHGV-0135374_31	Structural annotation	PF10774	NA	NA
UHGV-0135374_32	eggNOG-mapper	910314.HMPREF9220_0722	NA	NA
UHGV-0135374_32	Structural annotation	MF_04122	NA	NA
UHGV-0135374_33	PHROG	phrog_342	internal virion protein with endolysin domain	head and packaging
UHGV-0135374_33	UniRef90	UniRef90_A0A1M6MGY6	Phage_lysozyme2 domain-containing protein	NA
UHGV-0135374_33	eggNOG-mapper	910314.HMPREF9220_0721	NA	NA
UHGV-0135374_33	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0135374_33	Structural annotation	MF_04121, NF038016, COG1705	NA	NA
UHGV-0135374_34	PHROG	phrog_6256	tail fiber protein	tail
UHGV-0135374_34	eggNOG-mapper	910314.HMPREF9220_0720	Phage T7 tail fibre protein	NA
UHGV-0135374_34	Pfam	PF03906	Phage T7 tail fibre protein	Phage_T7_tail
UHGV-0135374_36	eggNOG-mapper	936573.HMPREF1147_1352	NA	NA
UHGV-0135374_37	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0135374_37	PHROG	phrog_3513	endolysin	lysis
UHGV-0135374_37	UniRef90	UniRef90_A1HR64	Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA
UHGV-0135374_37	eggNOG-mapper	401526.TcarDRAFT_1294	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0135374_37	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0135374_37	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0135374_37	Structural annotation	PF01832, NF038016, COG1705	NA	NA
UHGV-0135374_39	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0135374_39	UniRef90	UniRef90_UPI0018D58E1D	phage terminase large subunit	NA
UHGV-0135374_39	eggNOG-mapper	910314.HMPREF9220_0713	chromosome segregation	NA
UHGV-0135374_39	NCBIFam	NF033889.1	phage terminase large subunit	NA
UHGV-0135374_39	COG	COG5410	NA	NA
UHGV-0135374_39	HAMAP	MF_04147	Terminase, large subunit	NA
UHGV-0135374_39	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0135374_40	Structural annotation	PF03895	NA	NA
UHGV-0135374_41	KOfam	K00919	ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [EC:2.7.1.148]	NA
UHGV-0135374_41	PHROG	phrog_20964	NA	unknown function
UHGV-0135374_41	UniRef90	UniRef90_C9LPS3	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase	NA
UHGV-0135374_41	eggNOG-mapper	592028.GCWU000321_01553	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol	NA
UHGV-0135374_41	Pfam	PF00288	GHMP kinases N terminal domain	GHMP_kinases_N
UHGV-0135374_41	Pfam	PF08544	GHMP kinases C terminal	GHMP_kinases_C
UHGV-0135374_41	NCBIFam	TIGR00154.1	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA
UHGV-0135374_41	COG	COG1947	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	NA
UHGV-0135374_41	HAMAP	MF_00061	Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]	NA
UHGV-0135374_42	UniRef90	UniRef90_C9LPT0	Outer membrane protein alpha	NA
UHGV-0135374_42	eggNOG-mapper	592028.GCWU000321_01560	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane	NA
UHGV-0135374_42	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0135374_42	COG	COG3203	Outer membrane porin OmpC/OmpF/PhoE	NA