UHGV-0135388

Genome information

Genome length 20,688 bps

CDS count 30

Completeness 53.25% (medium-quality)

geNomad score 0.9729

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135388
vOTU ID	vOTU-042469
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_394362
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.25% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9729
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.45
Jumbo phage	No

Genome content
Genome length	20,688 bps
GC content	29.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	92.08%
Average CDS length	638.60 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135388_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0135388_2	PHROG	phrog_435	endolysin	lysis
UHGV-0135388_2	UniRef90	UniRef90_UPI00164BD9D7	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0135388_2	eggNOG-mapper	1408437.JNJN01000047_gene708	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0135388_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0135388_2	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0135388_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0135388_2	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860, COG5492	NA	NA
UHGV-0135388_3	PHROG	phrog_20258	NA	unknown function
UHGV-0135388_3	eggNOG-mapper	1280689.AUJC01000011_gene1537	NA	NA
UHGV-0135388_4	PHROG	phrog_2429	involved in bacteriocin production or immunity	moron, auxiliary metabolic gene and host takeover
UHGV-0135388_4	UniRef90	UniRef90_UPI00082BE41A	BhlA/UviB family holin-like peptide	NA
UHGV-0135388_4	eggNOG-mapper	1415774.U728_1063	BhlA holin family	NA
UHGV-0135388_4	Pfam	PF10960	BhlA holin family	Holin_BhlA
UHGV-0135388_5	PHROG	phrog_14029	NA	unknown function
UHGV-0135388_5	UniRef90	UniRef90_U5PWV0	NAGPA domain-containing protein	NA
UHGV-0135388_5	eggNOG-mapper	10685.B6V2M3_BPSP1	Pfam:NAGPA	NA
UHGV-0135388_5	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0135388_6	Structural annotation	PF13157, MF_01372, NF040827, COG3542	NA	NA
UHGV-0135388_7	PHROG	phrog_3558	tail protein	tail
UHGV-0135388_7	UniRef90	UniRef90_UPI0004B53C32	phage tail protein	NA
UHGV-0135388_7	eggNOG-mapper	1414720.CBYM010000040_gene1657	Phage minor structural protein, N-terminal	NA
UHGV-0135388_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0135388_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0135388_7	COG	COG4926	Phage-related protein	NA
UHGV-0135388_7	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0135388_8	UniRef90	UniRef90_UPI0004ACC375	phage tail family protein	NA
UHGV-0135388_8	eggNOG-mapper	1414720.CBYM010000040_gene1656	PFAM Phage tail protein	NA
UHGV-0135388_8	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0135388_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0135388_8	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0135388_9	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0135388_9	UniRef90	UniRef90_UPI0004AC99C3	phage tail tape measure protein	NA
UHGV-0135388_9	eggNOG-mapper	457396.CSBG_01057	tape measure	NA
UHGV-0135388_9	COG	COG5283	Phage-related tail protein	NA
UHGV-0135388_10	eggNOG-mapper	457396.CSBG_01056	NA	NA
UHGV-0135388_11	eggNOG-mapper	457396.CSBG_01055	NA	NA
UHGV-0135388_12	PHROG	phrog_885	major tail protein	tail
UHGV-0135388_12	UniRef90	UniRef90_UPI000BE41A82	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0135388_12	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-0135388_12	Pfam	PF13290	Chitobiase/beta-hexosaminidase C-terminal domain	CHB_HEX_C_1
UHGV-0135388_12	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0135388_12	Structural annotation	PF02368, PF06488, TIGR04225	NA	NA
UHGV-0135388_13	UniRef90	UniRef90_A0A6B0DYC1	NA	NA
UHGV-0135388_13	eggNOG-mapper	457396.CSBG_01053	NA	NA
UHGV-0135388_13	Structural annotation	PF11367, COG4722	NA	NA
UHGV-0135388_14	UniRef90	UniRef90_A0A133N6J9	Phage protein, HK97 gp10 family	NA
UHGV-0135388_14	eggNOG-mapper	457396.CSBG_01052	NA	NA
UHGV-0135388_14	Structural annotation	TIGR01725	NA	NA
UHGV-0135388_15	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0135388_15	UniRef90	UniRef90_J7J5Q1	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0135388_15	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-0135388_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0135388_15	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0135388_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0135388_16	eggNOG-mapper	457396.CSBG_01050	NA	NA
UHGV-0135388_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0135388_17	UniRef90	UniRef90_A0A1C6JHX3	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0135388_17	eggNOG-mapper	457396.CSBG_01049	Phage major capsid protein, HK97 family	NA
UHGV-0135388_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0135388_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0135388_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0135388_17	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0135388_18	KOfam	K06904	NA	NA
UHGV-0135388_18	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0135388_18	UniRef90	UniRef90_A0A1C6JHE9	Phage prohead protease, HK97 family	NA
UHGV-0135388_18	eggNOG-mapper	457396.CSBG_01048	Phage prohead protease, HK97 family	NA
UHGV-0135388_18	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0135388_18	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0135388_18	COG	COG3740	Phage head maturation protease	NA
UHGV-0135388_18	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0135388_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0135388_19	UniRef90	UniRef90_A0A1C6JHN8	Phage portal protein, HK97 family	NA
UHGV-0135388_19	eggNOG-mapper	457396.CSBG_01047	Portal protein	NA
UHGV-0135388_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0135388_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0135388_19	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0135388_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0135388_20	UniRef90	UniRef90_A0A1C6JHP9	Phage terminase-like protein, large subunit	NA
UHGV-0135388_20	eggNOG-mapper	457396.CSBG_01046	Terminase	NA
UHGV-0135388_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0135388_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0135388_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0135388_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0135388_21	PHROG	phrog_1066	NA	unknown function
UHGV-0135388_21	UniRef90	UniRef90_A0A316MDS1	Zinc-binding protein	NA
UHGV-0135388_21	eggNOG-mapper	457396.CSBG_01045	NA	NA
UHGV-0135388_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0135388_22	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0135388_22	UniRef90	UniRef90_V9H2B4	HNH domain-containing protein	NA
UHGV-0135388_22	eggNOG-mapper	457396.CSBG_01044	HNH endonuclease	NA
UHGV-0135388_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0135388_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0135388_22	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0135388_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0135388_24	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0135388_24	UniRef90	UniRef90_UPI00115C567C	terminase small subunit	NA
UHGV-0135388_24	eggNOG-mapper	1196322.A370_02037	terminase, small subunit	NA
UHGV-0135388_24	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0135388_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0135388_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0135388_24	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0135388_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0135388_25	UniRef90	UniRef90_A0A1G9I4W9	Sigma-70, region 4	NA
UHGV-0135388_25	eggNOG-mapper	1415774.U728_493	DNA-templated transcription, initiation	NA
UHGV-0135388_25	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0135388_25	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0135388_29	eggNOG-mapper	457396.CSBG_01441	NA	NA