UHGV-0135393

Genome information

Genome length 24,270 bps

CDS count 31

Completeness 58.89% (medium-quality)

geNomad score 0.9701

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135393
vOTU ID	vOTU-023313
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_372771
BioSample	SAMN03418259
Country	Tanzania
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9701
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.16
Jumbo phage	No

Genome content
Genome length	24,270 bps
GC content	38.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	94.65%
Average CDS length	743.03 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135393_2	eggNOG-mapper	1504823.CCMM01000011_gene1428	NA	NA
UHGV-0135393_2	Structural annotation	PF21297, NF041116	NA	NA
UHGV-0135393_3	UniRef90	UniRef90_A0A3C1CV98	zinc_ribbon_2 domain-containing protein	NA
UHGV-0135393_3	eggNOG-mapper	500632.CLONEX_03664	zinc-ribbon domain	NA
UHGV-0135393_3	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0135393_4	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0135393_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0135393_4	UniRef90	UniRef90_A0A413QHG2	XRE family transcriptional regulator	NA
UHGV-0135393_4	eggNOG-mapper	411471.SUBVAR_07446	helix-turn-helix	NA
UHGV-0135393_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0135393_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0135393_4	Structural annotation	PF13443, NF041951, COG3655	NA	NA
UHGV-0135393_5	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0135393_5	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0135393_5	UniRef90	UniRef90_A0A1C6HHY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0135393_5	eggNOG-mapper	411902.CLOBOL_03426	COG COG0338 Site-specific DNA methylase	NA
UHGV-0135393_5	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0135393_5	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0135393_5	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0135393_5	COG	COG0338	DNA-adenine methylase	NA
UHGV-0135393_5	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0135393_6	PHROG	phrog_443	holin	lysis
UHGV-0135393_6	UniRef90	UniRef90_UPI0008299632	holin	NA
UHGV-0135393_6	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-0135393_6	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0135393_6	Structural annotation	PF16945	NA	NA
UHGV-0135393_7	PHROG	phrog_872	NA	unknown function
UHGV-0135393_7	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0135393_7	dbAPIS	APIS052	NA	NA
UHGV-0135393_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0135393_8	PHROG	phrog_833	endolysin	lysis
UHGV-0135393_8	UniRef90	UniRef90_R6MSP5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0135393_8	eggNOG-mapper	428125.CLOLEP_01782	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0135393_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0135393_8	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0135393_8	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0135393_10	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0135393_10	Structural annotation	PF10651, PF01664	NA	NA
UHGV-0135393_12	PHROG	phrog_18110	NA	unknown function
UHGV-0135393_12	UniRef90	UniRef90_A0A373KYA3	Prophage_tail domain-containing protein	NA
UHGV-0135393_12	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0135393_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0135393_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0135393_12	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0135393_12	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0135393_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0135393_13	UniRef90	UniRef90_A0A1G4WVH7	Phage-related protein	NA
UHGV-0135393_13	eggNOG-mapper	411459.RUMOBE_00925	phage tail	NA
UHGV-0135393_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0135393_13	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0135393_14	PHROG	phrog_19074	NA	unknown function
UHGV-0135393_14	UniRef90	UniRef90_A0A373L0L9	Phage tail tape measure protein	NA
UHGV-0135393_14	eggNOG-mapper	536233.CLO_2822	Phage tail tape measure protein, TP901 family	NA
UHGV-0135393_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0135393_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0135393_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0135393_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0135393_16	PHROG	phrog_706	NA	unknown function
UHGV-0135393_16	UniRef90	UniRef90_A0A1G4WU45	Bacteriophage Gp15 protein	NA
UHGV-0135393_16	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-0135393_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0135393_16	Structural annotation	PF06854	NA	NA
UHGV-0135393_17	PHROG	phrog_4450	NA	unknown function
UHGV-0135393_17	UniRef90	UniRef90_A0A413QHF8	AP endonuclease	NA
UHGV-0135393_17	eggNOG-mapper	536233.CLO_1573	NA	NA
UHGV-0135393_17	Pfam	PF20378	NA	DUF6673
UHGV-0135393_17	Structural annotation	PF20378	NA	NA
UHGV-0135393_18	PHROG	phrog_3099	NA	unknown function
UHGV-0135393_18	UniRef90	UniRef90_T3DT99	S-l_SbsC_C domain-containing protein	NA
UHGV-0135393_18	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-0135393_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0135393_19	PHROG	phrog_3266	tail completion	connector
UHGV-0135393_19	UniRef90	UniRef90_A0A373KYC6	Chloramphenicol resistance protein	NA
UHGV-0135393_19	eggNOG-mapper	641112.ACOK01000073_gene2899	NA	NA
UHGV-0135393_19	Structural annotation	PF12691	NA	NA
UHGV-0135393_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0135393_20	UniRef90	UniRef90_A0A413QH49	Capsid protein	NA
UHGV-0135393_20	eggNOG-mapper	1160721.RBI_II00534	Minor capsid protein	NA
UHGV-0135393_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0135393_20	Structural annotation	PF11114	NA	NA
UHGV-0135393_21	PHROG	phrog_3366	NA	unknown function
UHGV-0135393_21	eggNOG-mapper	545697.HMPREF0216_02852	NA	NA
UHGV-0135393_21	Pfam	PF20536	NA	DUF6751
UHGV-0135393_21	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-0135393_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0135393_22	eggNOG-mapper	663278.Ethha_0095	NA	NA
UHGV-0135393_23	PHROG	phrog_212	major head protein	head and packaging
UHGV-0135393_23	UniRef90	UniRef90_A0A373KYA5	Phage capsid protein	NA
UHGV-0135393_23	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0135393_23	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0135393_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0135393_24	UniRef90	UniRef90_A0A1G4WVL7	Phage minor structural protein GP20	NA
UHGV-0135393_24	eggNOG-mapper	1401067.HMPREF0872_00300	Phage minor structural protein GP20	NA
UHGV-0135393_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0135393_24	Structural annotation	PF06810	NA	NA
UHGV-0135393_25	UniRef90	UniRef90_A0A413JZB5	Glutamyl-tRNA amidotransferase	NA
UHGV-0135393_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0135393_26	UniRef90	UniRef90_A0A373KZU7	Capsid protein	NA
UHGV-0135393_26	eggNOG-mapper	641112.ACOK01000073_gene2890	NA	NA
UHGV-0135393_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0135393_26	COG	COG2369	NA	NA
UHGV-0135393_26	Structural annotation	PF06152	NA	NA
UHGV-0135393_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0135393_27	UniRef90	UniRef90_A0A3D0XCF1	Phage capsid protein	NA
UHGV-0135393_27	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0135393_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0135393_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0135393_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0135393_28	UniRef90	UniRef90_A0A373L0G3	PBSX family phage terminase large subunit	NA
UHGV-0135393_28	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-0135393_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0135393_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0135393_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0135393_28	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0135393_30	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0135393_30	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0135393_30	UniRef90	UniRef90_A0A413QHD3	NGN domain-containing protein	NA
UHGV-0135393_30	eggNOG-mapper	883156.HMPREF9282_00720	Participates in transcription elongation, termination and antitermination	NA
UHGV-0135393_30	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0135393_30	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0135393_30	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0135393_31	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0135393_31	UniRef90	UniRef90_A0A373L007	NA	NA
UHGV-0135393_31	eggNOG-mapper	411902.CLOBOL_06314	NA	NA
UHGV-0135393_31	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0135393_31	Structural annotation	PF11985	NA	NA