UHGV-0135462

Genome information

Genome length 44,626 bps

CDS count 66

Completeness 99.24% (high-quality)

geNomad score 0.9745

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135462
vOTU ID	vOTU-070862
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_375793
BioSample	SAMN03653686
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.24% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9745
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.19
Jumbo phage	No

Genome content
Genome length	44,626 bps
GC content	42.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	91.17%
Average CDS length	620.55 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135462_1	KOfam	K07273	acm; lysozyme	NA
UHGV-0135462_1	PHROG	phrog_291	endolysin	lysis
UHGV-0135462_1	UniRef90	UniRef90_A0A7G5MR78	PG_binding_1 domain-containing protein	NA
UHGV-0135462_1	eggNOG-mapper	33035.JPJF01000043_gene994	Glycosyl hydrolases family 25	NA
UHGV-0135462_1	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0135462_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0135462_1	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0135462_1	Structural annotation	PF01183, PF01471, COG3757	NA	NA
UHGV-0135462_2	PHROG	phrog_1048	NA	unknown function
UHGV-0135462_2	UniRef90	UniRef90_UPI00148B1F1A	NA	NA
UHGV-0135462_2	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0135462_2	Pfam	PF11195	NA	DUF2829
UHGV-0135462_2	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0135462_2	Structural annotation	PF11195	NA	NA
UHGV-0135462_3	UniRef90	UniRef90_UPI000CF2C653	NA	NA
UHGV-0135462_3	eggNOG-mapper	742735.HMPREF9467_00722	NA	NA
UHGV-0135462_3	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0135462_4	PHROG	phrog_199	holin	lysis
UHGV-0135462_4	UniRef90	UniRef90_UPI001D04A6A6	phage holin family protein	NA
UHGV-0135462_4	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-0135462_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0135462_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0135462_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0135462_5	PHROG	phrog_1382	NA	unknown function
UHGV-0135462_5	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-0135462_6	eggNOG-mapper	33035.JPJF01000043_gene999	NA	NA
UHGV-0135462_7	PHROG	phrog_17147	NA	unknown function
UHGV-0135462_7	UniRef90	UniRef90_A0A1M6MWL0	N-terminal domain of peptidoglycan hydrolase CwlO-containing protein	NA
UHGV-0135462_7	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0135462_7	Structural annotation	PF10651	NA	NA
UHGV-0135462_8	eggNOG-mapper	1463856.JOHY01000008_gene806	Parallel beta-helix repeats	NA
UHGV-0135462_8	COG	COG5434	Polygalacturonase	NA
UHGV-0135462_8	Structural annotation	PF09458, NF012201	NA	NA
UHGV-0135462_9	PHROG	phrog_18444	NA	unknown function
UHGV-0135462_9	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0135462_9	eggNOG-mapper	1294142.CINTURNW_1043	NA	NA
UHGV-0135462_10	PHROG	phrog_6616	tail protein	tail
UHGV-0135462_10	UniRef90	UniRef90_A0A3D3U8S7	Peptidase S74 domain-containing protein	NA
UHGV-0135462_10	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0135462_10	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0135462_11	PHROG	phrog_1194	NA	unknown function
UHGV-0135462_11	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0135462_12	KOfam	K08757	APOA1; apolipoprotein A-I	NA
UHGV-0135462_12	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0135462_12	UniRef90	UniRef90_UPI000E5088A1	apolipoprotein A1/A4/E domain-containing protein	NA
UHGV-0135462_12	eggNOG-mapper	33035.JPJF01000043_gene1003	phage tail tape measure protein	NA
UHGV-0135462_12	COG	COG1511	NA	NA
UHGV-0135462_13	PHROG	phrog_706	NA	unknown function
UHGV-0135462_13	UniRef90	UniRef90_A0A173TZF2	Bacteriophage Gp15 protein	NA
UHGV-0135462_13	eggNOG-mapper	33035.JPJF01000106_gene3124	Bacteriophage Gp15 protein	NA
UHGV-0135462_13	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0135462_13	Structural annotation	PF06854	NA	NA
UHGV-0135462_14	PHROG	phrog_11299	NA	unknown function
UHGV-0135462_14	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0135462_14	Structural annotation	PF10666	NA	NA
UHGV-0135462_15	PHROG	phrog_3099	NA	unknown function
UHGV-0135462_15	eggNOG-mapper	33035.JPJF01000106_gene3126	NA	NA
UHGV-0135462_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0135462_16	PHROG	phrog_3266	tail completion	connector
UHGV-0135462_16	eggNOG-mapper	33035.JPJF01000106_gene3127	NA	NA
UHGV-0135462_16	Structural annotation	PF12691	NA	NA
UHGV-0135462_17	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0135462_17	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0135462_17	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0135462_17	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0135462_17	Structural annotation	PF11114	NA	NA
UHGV-0135462_18	PHROG	phrog_3366	NA	unknown function
UHGV-0135462_18	eggNOG-mapper	33035.JPJF01000106_gene3129	NA	NA
UHGV-0135462_18	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0135462_19	PHROG	phrog_1233	NA	unknown function
UHGV-0135462_19	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0135462_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0135462_20	eggNOG-mapper	33035.JPJF01000106_gene3131	NA	NA
UHGV-0135462_21	PHROG	phrog_247	major head protein	head and packaging
UHGV-0135462_21	UniRef90	UniRef90_UPI001BA5448B	major capsid protein	NA
UHGV-0135462_21	eggNOG-mapper	33035.JPJF01000106_gene3132	NA	NA
UHGV-0135462_21	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0135462_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0135462_22	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0135462_22	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0135462_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0135462_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0135462_23	UniRef90	UniRef90_A0A1C7I784	Phage capsid protein	NA
UHGV-0135462_23	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0135462_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0135462_23	COG	COG2369	NA	NA
UHGV-0135462_23	Structural annotation	PF06152	NA	NA
UHGV-0135462_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0135462_24	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0135462_24	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0135462_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0135462_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0135462_25	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0135462_25	UniRef90	UniRef90_A0A1C7I418	Terminase	NA
UHGV-0135462_25	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0135462_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0135462_25	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0135462_25	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0135462_25	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0135462_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0135462_25	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0135462_26	PHROG	phrog_33130	NA	unknown function
UHGV-0135462_26	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0135462_26	Structural annotation	PF10922	NA	NA
UHGV-0135462_28	eggNOG-mapper	697281.Mahau_0079	NA	NA
UHGV-0135462_28	Structural annotation	PF15968	NA	NA
UHGV-0135462_29	eggNOG-mapper	926561.KB900623_gene725	NA	NA
UHGV-0135462_29	Structural annotation	PF20505, MF_00194, NF001463, COG2974	NA	NA
UHGV-0135462_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0135462_30	UniRef90	UniRef90_UPI001D041E4A	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0135462_30	eggNOG-mapper	1232453.BAIF02000011_gene3350	NA	NA
UHGV-0135462_30	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0135462_30	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0135462_32	PHROG	phrog_6568	NA	unknown function
UHGV-0135462_33	AcrCatalog	cluster_12174	NA	NA
UHGV-0135462_33	Structural annotation	MF_01194, NF010729	NA	NA
UHGV-0135462_35	PHROG	phrog_37916	NA	unknown function
UHGV-0135462_37	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0135462_37	UniRef90	UniRef90_A0A7G5MR49	Class I SAM-dependent methyltransferase	NA
UHGV-0135462_37	eggNOG-mapper	1321779.HMPREF1984_00119	methyltransferase	NA
UHGV-0135462_37	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0135462_37	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0135462_37	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0135462_37	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0135462_39	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0135462_39	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0135462_39	UniRef90	UniRef90_A0A7G5MY70	DEAD/DEAH box helicase	NA
UHGV-0135462_39	eggNOG-mapper	1232453.BAIF02000010_gene3343	Type III restriction protein res subunit	NA
UHGV-0135462_39	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-0135462_39	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0135462_39	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0135462_39	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0135462_39	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0135462_40	KOfam	K03552	hjr; holliday junction resolvase Hjr [EC:3.1.21.10]	NA
UHGV-0135462_40	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0135462_40	UniRef90	UniRef90_UPI00051B4392	Holliday junction resolvase RecU	NA
UHGV-0135462_40	eggNOG-mapper	1449050.JNLE01000003_gene3909	Recombination protein U	NA
UHGV-0135462_40	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0135462_40	Structural annotation	PF03838, MF_01490, NF002581, COG1591	NA	NA
UHGV-0135462_41	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0135462_41	UniRef90	UniRef90_A0A7G5MY71	NA	NA
UHGV-0135462_41	eggNOG-mapper	1232453.BAIF02000010_gene3340	NA	NA
UHGV-0135462_41	Pfam	PF06048	NA	DUF927
UHGV-0135462_41	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0135462_41	COG	COG5519	NA	NA
UHGV-0135462_41	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0135462_42	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0135462_42	PHROG	phrog_11992	NA	unknown function
UHGV-0135462_42	UniRef90	UniRef90_A0A7G5MY72	ZnF_CHCC domain-containing protein	NA
UHGV-0135462_42	eggNOG-mapper	1232453.BAIF02000010_gene3339	DNA primase activity	NA
UHGV-0135462_42	PADLOC	drt-UG29	DRT	DRT
UHGV-0135462_42	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0135462_42	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0135462_42	Structural annotation	PF01807	NA	NA
UHGV-0135462_43	PHROG	phrog_18107	NA	unknown function
UHGV-0135462_43	eggNOG-mapper	1232453.BAIF02000010_gene3338	NA	NA
UHGV-0135462_43	Structural annotation	PF05037	NA	NA
UHGV-0135462_44	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0135462_44	UniRef90	UniRef90_UPI00051BF987	AAA family ATPase	NA
UHGV-0135462_44	eggNOG-mapper	1232453.BAIF02000010_gene3337	AAA domain	NA
UHGV-0135462_44	Pfam	PF13479	AAA domain	AAA_24
UHGV-0135462_44	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0135462_45	eggNOG-mapper	1232453.BAIF02000010_gene3336	NA	NA
UHGV-0135462_47	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0135462_47	UniRef90	UniRef90_A0A7G5MR42	Siphovirus Gp157 family protein	NA
UHGV-0135462_47	eggNOG-mapper	1232453.BAIF02000010_gene3334	Siphovirus Gp157	NA
UHGV-0135462_47	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0135462_47	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0135462_49	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0135462_49	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0135462_49	UniRef90	UniRef90_A0A7G5MSN7	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0135462_49	eggNOG-mapper	1120971.AUCA01000005_gene2326	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released	NA
UHGV-0135462_49	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0135462_49	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0135462_49	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0135462_49	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0135462_49	Structural annotation	PF04542, PF08281, MF_00962, NF004471, COG1191	NA	NA
UHGV-0135462_50	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0135462_50	PHROG	phrog_7713	NA	unknown function
UHGV-0135462_50	UniRef90	UniRef90_UPI0013A77058	pentapeptide repeat-containing protein	NA
UHGV-0135462_50	eggNOG-mapper	768710.DesyoDRAFT_5248	Pentapeptide repeats (8 copies)	NA
UHGV-0135462_50	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0135462_50	COG	COG1357	NA	NA
UHGV-0135462_52	UniRef90	UniRef90_A0A7G5MR40	DNA-binding protein	NA
UHGV-0135462_52	Structural annotation	PF10743, TIGR01764, COG4220	NA	NA
UHGV-0135462_53	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0135462_53	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0135462_53	UniRef90	UniRef90_A0A4P6LTT4	Bro-N domain-containing protein	NA
UHGV-0135462_53	eggNOG-mapper	33035.JPJF01000057_gene3118	BRO family, N-terminal domain	NA
UHGV-0135462_53	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0135462_53	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0135462_53	COG	COG3617	Prophage antirepressor	NA
UHGV-0135462_53	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0135462_55	PHROG	phrog_585	NA	unknown function
UHGV-0135462_55	UniRef90	UniRef90_UPI001D081B2C	NA	NA
UHGV-0135462_55	eggNOG-mapper	1158602.I590_03003	NA	NA
UHGV-0135462_55	Pfam	PF10711	NA	DUF2513
UHGV-0135462_55	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0135462_58	Structural annotation	NF037954	NA	NA
UHGV-0135462_62	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0135462_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0135462_62	UniRef90	UniRef90_A0A1C7I753	Transcriptional regulator	NA
UHGV-0135462_62	eggNOG-mapper	1235792.C808_00054	Helix-turn-helix XRE-family like proteins	NA
UHGV-0135462_62	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0135462_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0135462_62	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0135462_64	UniRef90	UniRef90_UPI00051C3178	helix-turn-helix domain-containing protein	NA
UHGV-0135462_64	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0135462_64	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0135462_64	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0135462_65	PHROG	phrog_2700	NA	unknown function
UHGV-0135462_65	UniRef90	UniRef90_UPI00051C0377	PH domain-containing protein	NA
UHGV-0135462_65	eggNOG-mapper	1227268.HMPREF1552_02052	Bacterial PH domain	NA
UHGV-0135462_65	Pfam	PF14470	Bacterial PH domain	bPH_3
UHGV-0135462_65	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0135462_65	Structural annotation	PF14470, NF033891, COG3402	NA	NA
UHGV-0135462_66	KOfam	K14059	int; integrase	NA
UHGV-0135462_66	PHROG	phrog_1	integrase	integration and excision
UHGV-0135462_66	UniRef90	UniRef90_A0A1C7I459	Integrase	NA
UHGV-0135462_66	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0135462_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0135462_66	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0135462_66	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA