UHGV-0135479

Genome information

Genome length 21,357 bps

CDS count 30

Completeness 95.91% (high-quality)

geNomad score 0.9590

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135479
vOTU ID	vOTU-065879
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_359293
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.91% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9590
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.34
Jumbo phage	No

Genome content
Genome length	21,357 bps
GC content	34.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	30
CDS density	92.38%
Average CDS length	660.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135479_2	PHROG	phrog_20607	NA	unknown function
UHGV-0135479_2	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0135479_7	PHROG	phrog_2150	terminase	head and packaging
UHGV-0135479_7	UniRef90	UniRef90_P11014	DNA packaging protein	NA
UHGV-0135479_7	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0135479_7	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0135479_7	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0135479_8	KOfam	K07273	acm; lysozyme	NA
UHGV-0135479_8	PHROG	phrog_291	endolysin	lysis
UHGV-0135479_8	UniRef90	UniRef90_A0A0R2FSM3	Lysozyme	NA
UHGV-0135479_8	eggNOG-mapper	1071400.LBUCD034_0976	hydrolase, family 25	NA
UHGV-0135479_8	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0135479_8	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0135479_9	PHROG	phrog_11037	NA	unknown function
UHGV-0135479_9	UniRef90	UniRef90_A0A0R2I7H4	Phage_lysozyme2 domain-containing protein	NA
UHGV-0135479_9	eggNOG-mapper	1449336.JQLO01000001_gene102	cytolysis by virus of host cell	NA
UHGV-0135479_9	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0135479_9	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0135479_10	UniRef90	UniRef90_A0A2A7QRT2	Peptidase_M23 domain-containing protein	NA
UHGV-0135479_10	eggNOG-mapper	1203076.CAKF01000013_gene1089	Peptidase family M23	NA
UHGV-0135479_10	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0135479_10	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0135479_11	PHROG	phrog_199	holin	lysis
UHGV-0135479_11	eggNOG-mapper	482234.SCAZ3_03820	Bacteriophage holin family	NA
UHGV-0135479_11	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0135479_11	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0135479_12	PHROG	phrog_17240	NA	unknown function
UHGV-0135479_12	UniRef90	UniRef90_UPI0011113A3B	SGNH/GDSL hydrolase family protein	NA
UHGV-0135479_12	eggNOG-mapper	1349822.NSB1T_12060	NA	NA
UHGV-0135479_12	Structural annotation	PF16255, PF07100, NF007403	NA	NA
UHGV-0135479_13	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0135479_13	UniRef90	UniRef90_P68930	Proximal tail tube connector protein	NA
UHGV-0135479_13	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0135479_14	PHROG	phrog_2038	upper collar connector	connector
UHGV-0135479_14	UniRef90	UniRef90_A0A5Q2WB79	Upper collar protein	NA
UHGV-0135479_14	eggNOG-mapper	1309583.M4W5Z5_9CAUD	Phage Connector (GP10)	NA
UHGV-0135479_14	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0135479_14	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0135479_15	PHROG	phrog_2248	tail protein	tail
UHGV-0135479_15	UniRef90	UniRef90_A0A8F2J8E2	Tail knob protein	NA
UHGV-0135479_15	eggNOG-mapper	1309583.M4W9Q4_9CAUD	NA	NA
UHGV-0135479_15	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0135479_15	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0135479_15	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0135479_16	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0135479_16	UniRef90	UniRef90_Q37888	Major capsid protein	NA
UHGV-0135479_16	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0135479_16	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0135479_26	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0135479_26	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0135479_26	UniRef90	UniRef90_B7SSM2	DNA polymerase	NA
UHGV-0135479_26	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0135479_26	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0135479_26	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0135479_27	PHROG	phrog_6358	DNA terminal protein	DNA, RNA and nucleotide metabolism
UHGV-0135479_27	Pfam	PF05435	Phi-29 DNA terminal protein GP3	Phi-29_GP3
UHGV-0135479_27	Structural annotation	PF05435	NA	NA
UHGV-0135479_28	PHROG	phrog_10365	late transcriptional activator	transcription regulation
UHGV-0135479_28	UniRef90	UniRef90_A0A1X9SGP7	Transcription regulator	NA
UHGV-0135479_28	Pfam	PF05464	Phi-29-like late genes activator (early protein GP4)	Phi-29_GP4
UHGV-0135479_29	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0135479_29	Structural annotation	PF17427	NA	NA