UHGV-0135544

Genome information

Genome length 38,956 bps

CDS count 47

Completeness 99.90% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135544
vOTU ID	vOTU-007478
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_365174
BioSample	SAMN03283268
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.2
Jumbo phage	No

Genome content
Genome length	38,956 bps
GC content	36.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	91.13%
Average CDS length	759.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135544_1	KOfam	K14059	int; integrase	NA
UHGV-0135544_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0135544_1	UniRef90	UniRef90_A0A374AMT2	Zinc-ribbon domain-containing protein	NA
UHGV-0135544_1	eggNOG-mapper	428125.CLOLEP_01345	Belongs to the 'phage' integrase family	NA
UHGV-0135544_1	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0135544_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0135544_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0135544_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0135544_2	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0135544_2	UniRef90	UniRef90_UPI001593E0D0	Abi family protein	NA
UHGV-0135544_2	eggNOG-mapper	1235792.C808_03102	Abi-like protein	NA
UHGV-0135544_2	PADLOC	AbiD	AbiD	Abi
UHGV-0135544_2	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0135544_2	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0135544_2	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0135544_3	eggNOG-mapper	1235792.C808_03101	NA	NA
UHGV-0135544_3	Structural annotation	PF16538	NA	NA
UHGV-0135544_4	UniRef90	UniRef90_A0A173RTG3	Bacterial Ig-like domain (Group 2)	NA
UHGV-0135544_4	eggNOG-mapper	1449050.JNLE01000003_gene3872	Bacterial Ig-like domain (group 2)	NA
UHGV-0135544_4	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0135544_4	Structural annotation	PF02368, NF005261, COG3121	NA	NA
UHGV-0135544_5	PHROG	phrog_1847	NA	unknown function
UHGV-0135544_5	UniRef90	UniRef90_UPI00191FCFBF	GIY-YIG nuclease family protein	NA
UHGV-0135544_5	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0135544_5	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0135544_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0135544_5	Structural annotation	PF19824, PF08926	NA	NA
UHGV-0135544_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0135544_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0135544_6	UniRef90	UniRef90_UPI00156D79C9	XRE family transcriptional regulator	NA
UHGV-0135544_6	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0135544_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135544_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0135544_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0135544_6	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0135544_7	UniRef90	UniRef90_C4GAU8	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0135544_7	eggNOG-mapper	626523.GCWU000342_01049	NA	NA
UHGV-0135544_7	Pfam	PF05339	NA	DUF739
UHGV-0135544_7	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0135544_7	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0135544_11	PHROG	phrog_6058	NA	unknown function
UHGV-0135544_11	eggNOG-mapper	1504823.CCMM01000012_gene1710	NA	NA
UHGV-0135544_11	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0135544_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0135544_14	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0135544_14	eggNOG-mapper	1196322.A370_05744	NA	NA
UHGV-0135544_14	Structural annotation	PF21578	NA	NA
UHGV-0135544_15	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0135544_15	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0135544_15	UniRef90	UniRef90_A0A415YC84	RNase H type-1 domain-containing protein	NA
UHGV-0135544_15	eggNOG-mapper	1122139.KB907863_gene1814	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0135544_15	Pfam	PF00075	RNase H	RNase_H
UHGV-0135544_15	COG	COG0328	Ribonuclease HI	NA
UHGV-0135544_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0135544_16	UniRef90	UniRef90_A0A415YC18	HNH endonuclease	NA
UHGV-0135544_16	eggNOG-mapper	1540257.JQMW01000009_gene3675	HNH nucleases	NA
UHGV-0135544_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0135544_16	Structural annotation	COG5126	NA	NA
UHGV-0135544_17	UniRef90	UniRef90_UPI0015704B43	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0135544_17	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-0135544_17	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0135544_18	PHROG	phrog_8470	NA	unknown function
UHGV-0135544_18	UniRef90	UniRef90_UPI00156DB36C	PcfJ domain-containing protein	NA
UHGV-0135544_18	eggNOG-mapper	1235793.C809_02197	PcfJ-like protein	NA
UHGV-0135544_18	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0135544_18	Structural annotation	PF14284	NA	NA
UHGV-0135544_19	PHROG	phrog_15077	NA	unknown function
UHGV-0135544_19	UniRef90	UniRef90_A0A415YC35	NA	NA
UHGV-0135544_19	eggNOG-mapper	411459.RUMOBE_00949	NA	NA
UHGV-0135544_19	Pfam	PF12961	NA	DUF3850
UHGV-0135544_19	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0135544_19	Structural annotation	PF12961, PF11300, MF_00771, NF002615, COG2411	NA	NA
UHGV-0135544_21	UniRef90	UniRef90_A0A415YC13	Transposase	NA
UHGV-0135544_21	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0135544_21	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0135544_21	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0135544_21	Structural annotation	PF01710, NF040595, COG3415	NA	NA
UHGV-0135544_22	PHROG	phrog_30258	NA	unknown function
UHGV-0135544_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0135544_23	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0135544_23	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-0135544_23	Structural annotation	PF02996	NA	NA
UHGV-0135544_24	PHROG	phrog_872	NA	unknown function
UHGV-0135544_24	UniRef90	UniRef90_A0A413P9Z7	NA	NA
UHGV-0135544_24	eggNOG-mapper	1235792.C808_00058	NA	NA
UHGV-0135544_24	Pfam	PF11195	NA	DUF2829
UHGV-0135544_24	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0135544_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0135544_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0135544_25	UniRef90	UniRef90_UPI00156DD68E	terminase small subunit	NA
UHGV-0135544_25	eggNOG-mapper	1304866.K413DRAFT_0812	Terminase small subunit	NA
UHGV-0135544_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0135544_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0135544_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0135544_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0135544_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0135544_26	UniRef90	UniRef90_A0A417V8L6	Terminase	NA
UHGV-0135544_26	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0135544_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0135544_26	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0135544_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0135544_27	UniRef90	UniRef90_A0A417V837	Phage portal protein	NA
UHGV-0135544_27	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0135544_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0135544_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0135544_28	UniRef90	UniRef90_UPI0015715021	minor capsid protein	NA
UHGV-0135544_28	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0135544_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0135544_28	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0135544_28	Structural annotation	PF06152	NA	NA
UHGV-0135544_30	Structural annotation	PF20873	NA	NA
UHGV-0135544_31	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0135544_31	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0135544_32	PHROG	phrog_422	major head protein	head and packaging
UHGV-0135544_32	UniRef90	UniRef90_A0A417V845	Phage capsid protein	NA
UHGV-0135544_32	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0135544_32	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0135544_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0135544_33	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0135544_34	PHROG	phrog_8710	NA	unknown function
UHGV-0135544_34	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0135544_34	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0135544_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0135544_35	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0135544_36	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0135544_36	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0135544_36	eggNOG-mapper	679192.HMPREF9013_1297	NA	NA
UHGV-0135544_36	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0135544_36	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0135544_37	PHROG	phrog_820	major tail protein	tail
UHGV-0135544_37	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0135544_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0135544_38	PHROG	phrog_8300	NA	unknown function
UHGV-0135544_38	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-0135544_38	Structural annotation	PF06854	NA	NA
UHGV-0135544_39	PHROG	phrog_8355	NA	unknown function
UHGV-0135544_39	UniRef90	UniRef90_UPI001D0684E3	bacteriophage Gp15 family protein	NA
UHGV-0135544_39	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0135544_40	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0135544_40	UniRef90	UniRef90_A0A1C5RRP4	Phage-related protein	NA
UHGV-0135544_40	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0135544_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0135544_40	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0135544_41	PHROG	phrog_1194	NA	unknown function
UHGV-0135544_41	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0135544_41	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0135544_42	PHROG	phrog_1401	NA	unknown function
UHGV-0135544_42	UniRef90	UniRef90_UPI001A9A8A65	NA	NA
UHGV-0135544_42	Structural annotation	PF07761	NA	NA
UHGV-0135544_43	PHROG	phrog_16267	NA	unknown function
UHGV-0135544_43	UniRef90	UniRef90_A0A417V835	Peptidase S74 domain-containing protein	NA
UHGV-0135544_43	eggNOG-mapper	1232453.BAIF02000058_gene1641	Phage minor structural protein	NA
UHGV-0135544_43	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0135544_43	COG	COG4926	Phage-related protein	NA
UHGV-0135544_44	PHROG	phrog_2566	NA	unknown function
UHGV-0135544_44	eggNOG-mapper	1232453.BAIF02000058_gene1639	NA	NA
UHGV-0135544_46	PHROG	phrog_199	holin	lysis
UHGV-0135544_46	UniRef90	UniRef90_UPI00156FA5B5	phage holin family protein	NA
UHGV-0135544_46	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0135544_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0135544_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0135544_46	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0135544_46	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0135544_47	PHROG	phrog_21357	endolysin	lysis
UHGV-0135544_47	UniRef90	UniRef90_UPI00156F8A64	CHAP domain-containing protein	NA
UHGV-0135544_47	eggNOG-mapper	693746.OBV_19030	CHAP domain	NA
UHGV-0135544_47	Pfam	PF05257	CHAP domain	CHAP
UHGV-0135544_47	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0135544_47	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0135544_47	Structural annotation	PF01471, PF00877, TIGR02594, TIGR03979, COG3942	NA	NA