UHGV-0135609

Genome information

vOTU vOTU-019895

Genome length 35,998 bps

CDS count 57

Completeness 87.81% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135609
vOTU ID	vOTU-019895
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_376040
BioSample	SAMN03653688
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.24
Jumbo phage	No

Genome content
Genome length	35,998 bps
GC content	39.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	93.83%
Average CDS length	595.16 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135609_1	KOfam	K14059	int; integrase	NA
UHGV-0135609_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0135609_1	UniRef90	UniRef90_A0A898FS49	Tyrosine-type recombinase/integrase	NA
UHGV-0135609_1	eggNOG-mapper	1280689.AUJC01000011_gene1488	Phage integrase family	NA
UHGV-0135609_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0135609_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0135609_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0135609_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0135609_2	eggNOG-mapper	411467.BACCAP_01870	NA	NA
UHGV-0135609_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0135609_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0135609_3	UniRef90	UniRef90_A0A898FRN3	Helix-turn-helix domain-containing protein	NA
UHGV-0135609_3	eggNOG-mapper	552396.HMPREF0863_00301	Helix-turn-helix XRE-family like proteins	NA
UHGV-0135609_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0135609_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0135609_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0135609_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0135609_4	UniRef90	UniRef90_A0A898FPW7	Helix-turn-helix domain-containing protein	NA
UHGV-0135609_4	eggNOG-mapper	552396.HMPREF0863_00300	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0135609_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135609_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0135609_5	UniRef90	UniRef90_A0A7X5KPU5	XRE family transcriptional regulator	NA
UHGV-0135609_5	eggNOG-mapper	1034347.CAHJ01000051_gene30	NA	NA
UHGV-0135609_5	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0135609_9	UniRef90	UniRef90_UPI0006C1E0FF	dockerin type I domain-containing protein	NA
UHGV-0135609_9	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-0135609_9	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-0135609_11	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0135609_11	UniRef90	UniRef90_A0A3A6D9V8	Bro-N domain-containing protein	NA
UHGV-0135609_11	eggNOG-mapper	742738.HMPREF9460_02498	BRO family, N-terminal domain	NA
UHGV-0135609_11	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0135609_11	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0135609_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0135609_11	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0135609_16	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0135609_16	UniRef90	UniRef90_A0A3A6DAQ7	Phage recombination protein Bet	NA
UHGV-0135609_16	eggNOG-mapper	86416.Clopa_4307	Phage recombination protein Bet	NA
UHGV-0135609_16	Pfam	PF03837	RecT family	RecT
UHGV-0135609_16	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0135609_16	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0135609_16	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0135609_17	PHROG	phrog_6244	NA	unknown function
UHGV-0135609_17	eggNOG-mapper	508419.F8J183_9CAUD	NA	NA
UHGV-0135609_18	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0135609_18	UniRef90	UniRef90_A0A898FSL1	HNH_5 domain-containing protein	NA
UHGV-0135609_18	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0135609_18	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0135609_19	Structural annotation	PF16454, NF007974	NA	NA
UHGV-0135609_20	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0135609_20	UniRef90	UniRef90_A0A898FYV2	NA	NA
UHGV-0135609_20	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-0135609_20	Pfam	PF06356	NA	DUF1064
UHGV-0135609_20	Structural annotation	PF06356, MF_04160, NF033179	NA	NA
UHGV-0135609_22	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0135609_22	eggNOG-mapper	1384057.CD33_13990	DnaD domain protein	NA
UHGV-0135609_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0135609_22	Structural annotation	PF09681, TIGR01446, NF033788, COG3935	NA	NA
UHGV-0135609_24	Structural annotation	PF02768, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0135609_27	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0135609_27	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0135609_27	UniRef90	UniRef90_A0A3A6DAS1	Single-stranded DNA-binding protein	NA
UHGV-0135609_27	eggNOG-mapper	658659.HMPREF0983_02345	Single-stranded DNA-binding protein	NA
UHGV-0135609_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0135609_27	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0135609_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0135609_27	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0135609_27	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0135609_28	UniRef90	UniRef90_UPI001D083C55	30S ribosomal protein S18	NA
UHGV-0135609_28	eggNOG-mapper	658659.HMPREF0983_02344	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	NA
UHGV-0135609_28	COG	COG0238	Ribosomal protein S18	NA
UHGV-0135609_32	UniRef90	UniRef90_UPI000E419D63	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0135609_32	Structural annotation	PF04545, PF01920, TIGR01636	NA	NA
UHGV-0135609_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0135609_36	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0135609_36	UniRef90	UniRef90_UPI001E415A90	terminase small subunit	NA
UHGV-0135609_36	eggNOG-mapper	431943.CKL_3281	terminase, small subunit	NA
UHGV-0135609_36	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0135609_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0135609_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0135609_36	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0135609_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0135609_37	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0135609_37	UniRef90	UniRef90_U5F7S3	PBSX family phage terminase, large subunit	NA
UHGV-0135609_37	eggNOG-mapper	552396.HMPREF0863_01628	Phage terminase, large subunit, PBSX family	NA
UHGV-0135609_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0135609_37	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0135609_38	PHROG	phrog_533	portal protein	head and packaging
UHGV-0135609_38	UniRef90	UniRef90_A0A1C6JYD4	Phage portal protein, putative, A118 family	NA
UHGV-0135609_38	eggNOG-mapper	552396.HMPREF0863_01629	NA	NA
UHGV-0135609_38	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0135609_39	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0135609_39	UniRef90	UniRef90_UPI0018AA1BD6	capsid protein	NA
UHGV-0135609_39	eggNOG-mapper	552396.HMPREF0863_01630	Phage minor capsid protein 2	NA
UHGV-0135609_39	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0135609_39	Structural annotation	PF06152	NA	NA
UHGV-0135609_42	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0135609_42	eggNOG-mapper	552396.HMPREF0863_01634	NA	NA
UHGV-0135609_43	PHROG	phrog_422	major head protein	head and packaging
UHGV-0135609_43	UniRef90	UniRef90_A0A3E2WBR9	Capsid protein	NA
UHGV-0135609_43	eggNOG-mapper	552396.HMPREF0863_01635	NA	NA
UHGV-0135609_43	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0135609_44	PHROG	phrog_1378	NA	unknown function
UHGV-0135609_44	eggNOG-mapper	552396.HMPREF0863_01636	NA	NA
UHGV-0135609_45	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0135609_45	eggNOG-mapper	552396.HMPREF0863_01637	NA	NA
UHGV-0135609_46	PHROG	phrog_8710	NA	unknown function
UHGV-0135609_46	eggNOG-mapper	552396.HMPREF0863_01638	NA	NA
UHGV-0135609_46	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0135609_47	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0135609_47	UniRef90	UniRef90_UPI000246D598	minor capsid protein	NA
UHGV-0135609_47	eggNOG-mapper	552396.HMPREF0863_01639	NA	NA
UHGV-0135609_48	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0135609_48	UniRef90	UniRef90_UPI001D0A149F	minor capsid protein	NA
UHGV-0135609_48	eggNOG-mapper	552396.HMPREF0863_01640	NA	NA
UHGV-0135609_48	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0135609_48	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0135609_49	PHROG	phrog_820	major tail protein	tail
UHGV-0135609_49	UniRef90	UniRef90_A0A7D6ZFT1	Ig-like domain-containing protein	NA
UHGV-0135609_49	eggNOG-mapper	552396.HMPREF0863_01641	domain, Protein	NA
UHGV-0135609_49	COG	COG5492	NA	NA
UHGV-0135609_49	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0135609_50	PHROG	phrog_8300	NA	unknown function
UHGV-0135609_50	eggNOG-mapper	1232449.BAHV02000018_gene1519	NA	NA
UHGV-0135609_50	Structural annotation	PF06896	NA	NA
UHGV-0135609_51	PHROG	phrog_8355	NA	unknown function
UHGV-0135609_51	UniRef90	UniRef90_A0A4R3TDU8	Bacteriophage Gp15 protein	NA
UHGV-0135609_51	eggNOG-mapper	552396.HMPREF0863_01643	NA	NA
UHGV-0135609_52	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0135609_52	UniRef90	UniRef90_A0A4R3TDI6	Phage-related protein	NA
UHGV-0135609_52	eggNOG-mapper	552396.HMPREF0863_01644	phage tail tape measure protein	NA
UHGV-0135609_52	COG	COG1511	NA	NA
UHGV-0135609_53	PHROG	phrog_1194	NA	unknown function
UHGV-0135609_53	eggNOG-mapper	552396.HMPREF0863_01645	NA	NA
UHGV-0135609_53	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0135609_54	PHROG	phrog_2566	NA	unknown function
UHGV-0135609_55	PHROG	phrog_1401	NA	unknown function
UHGV-0135609_55	UniRef90	UniRef90_A0A7C6P910	NA	NA
UHGV-0135609_55	eggNOG-mapper	1347392.CCEZ01000045_gene2	NA	NA
UHGV-0135609_55	Structural annotation	PF07761	NA	NA
UHGV-0135609_56	PHROG	phrog_16267	NA	unknown function
UHGV-0135609_56	UniRef90	UniRef90_UPI0008EB4AF8	tail fiber domain-containing protein	NA
UHGV-0135609_56	eggNOG-mapper	552396.HMPREF0863_01647	Phage minor structural protein	NA
UHGV-0135609_56	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0135609_56	COG	COG4926	Phage-related protein	NA
UHGV-0135609_56	Structural annotation	PF05113, NF033848, COG3500	NA	NA