UHGV-0135679

Genome information

Genome length 30,075 bps

CDS count 44

Completeness 76.33% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135679
vOTU ID	vOTU-033846
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_369478
BioSample	SAMN03283281
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.57
Jumbo phage	No

Genome content
Genome length	30,075 bps
GC content	50.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	96.43%
Average CDS length	663.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135679_2	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0135679_2	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-0135679_2	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0135679_3	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0135679_3	UniRef90	UniRef90_A0A174RC35	RecT family	NA
UHGV-0135679_3	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0135679_3	Pfam	PF03837	RecT family	RecT
UHGV-0135679_3	Structural annotation	NF007351	NA	NA
UHGV-0135679_5	Structural annotation	PF00436, MF_00984, TIGR04418, COG2965	NA	NA
UHGV-0135679_6	PHROG	phrog_9773	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0135679_6	UniRef90	UniRef90_A0A1B0WMY1	Phg_2220_C domain-containing protein	NA
UHGV-0135679_6	eggNOG-mapper	240302.BN982_04236	NA	NA
UHGV-0135679_7	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0135679_7	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0135679_7	UniRef90	UniRef90_A0A316PN60	Replicative DNA helicase	NA
UHGV-0135679_7	eggNOG-mapper	580331.Thit_2379	Participates in initiation and elongation during chromosome replication	NA
UHGV-0135679_7	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0135679_7	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0135679_7	COG	COG0305	Replicative DNA helicase	NA
UHGV-0135679_7	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0135679_9	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0135679_9	UniRef90	UniRef90_A0A533R9G2	Holliday junction endonuclease	NA
UHGV-0135679_9	eggNOG-mapper	684719.HIMB114_00008080	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0135679_9	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0135679_9	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0135679_10	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0135679_10	UniRef90	UniRef90_A0A498CN80	Class I SAM-dependent methyltransferase	NA
UHGV-0135679_10	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0135679_10	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0135679_10	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0135679_10	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0135679_10	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0135679_12	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0135679_14	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0135679_14	Structural annotation	MF_00387, TIGR03992, COG2171	NA	NA
UHGV-0135679_17	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0135679_19	eggNOG-mapper	1232443.BAIA02000078_gene48	NA	NA
UHGV-0135679_20	PHROG	phrog_3301	pyrophosphatase	other
UHGV-0135679_20	eggNOG-mapper	1226322.HMPREF1545_04060	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0135679_20	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0135679_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135679_23	eggNOG-mapper	755731.Clo1100_2421	NA	NA
UHGV-0135679_24	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0135679_29	PHROG	phrog_881	holin	lysis
UHGV-0135679_29	UniRef90	UniRef90_A0A4Q7P349	Dp-1 family holin	NA
UHGV-0135679_29	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0135679_29	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0135679_29	Structural annotation	PF16938	NA	NA
UHGV-0135679_30	PHROG	phrog_1863	NA	unknown function
UHGV-0135679_30	UniRef90	UniRef90_A0A7X2Z1D1	t-SNARE coiled-coil homology domain-containing protein	NA
UHGV-0135679_30	eggNOG-mapper	1122918.KB907250_gene3599	NA	NA
UHGV-0135679_31	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0135679_31	PHROG	phrog_329	minor tail protein	tail
UHGV-0135679_31	UniRef90	UniRef90_A0A2V2EEK9	NlpC/P60 domain-containing protein	NA
UHGV-0135679_31	eggNOG-mapper	1869.MB27_29350	NlpC/P60 family	NA
UHGV-0135679_31	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0135679_31	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0135679_31	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0135679_31	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0135679_32	Structural annotation	PF12988	NA	NA
UHGV-0135679_33	PHROG	phrog_918	NA	unknown function
UHGV-0135679_33	UniRef90	UniRef90_Q5ULN6	Orf78	NA
UHGV-0135679_33	eggNOG-mapper	298338.Q5ULN6_9CAUD	NA	NA
UHGV-0135679_33	Pfam	PF19791	NA	DUF6275
UHGV-0135679_33	Structural annotation	PF19791	NA	NA
UHGV-0135679_34	Structural annotation	PF14600, COG3979	NA	NA
UHGV-0135679_38	UniRef90	UniRef90_R5AH34	Triple helix repeat-containing collagen	NA
UHGV-0135679_38	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0135679_40	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0135679_40	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0135679_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0135679_42	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0135679_42	UniRef90	UniRef90_A0A316QRZ5	Terminase-like family protein	NA
UHGV-0135679_42	eggNOG-mapper	1449126.JQKL01000046_gene2072	NA	NA
UHGV-0135679_42	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0135679_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-0135679_42	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0135679_44	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0135679_44	UniRef90	UniRef90_A0A142BVJ7	Putative N4-gp56 family major capsid protein	NA
UHGV-0135679_44	eggNOG-mapper	935837.JAEK01000054_gene1469	NA	NA
UHGV-0135679_44	Pfam	PF13252	NA	DUF4043
UHGV-0135679_44	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA