UHGV-0135692

Genome information

Genome length 30,036 bps

CDS count 41

Completeness 64.69% (medium-quality)

geNomad score 0.9679

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135692
vOTU ID	vOTU-036771
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_356380
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	30
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9679
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.64
Jumbo phage	No

Genome content
Genome length	30,036 bps
GC content	50.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	91.12%
Average CDS length	671.49 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135692_1	PHROG	phrog_33262	NA	unknown function
UHGV-0135692_1	UniRef90	UniRef90_A0A066REE7	DNA adenine methylase	NA
UHGV-0135692_1	eggNOG-mapper	414970.A5LH72_9CAUD	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0135692_1	PADLOC	MTase_II_00049	Type II methyltransferase	RM
UHGV-0135692_1	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0135692_1	NCBIFam	TIGR01712.1	phage N-6-adenine-methyltransferase	NA
UHGV-0135692_1	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0135692_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0135692_2	PHROG	phrog_362	transcriptional repressor	transcription regulation
UHGV-0135692_2	UniRef90	UniRef90_A0A0A0G8T5	LexA family transcriptional regulator	NA
UHGV-0135692_2	eggNOG-mapper	754331.AEME01000001_gene4310	LexA DNA binding domain	NA
UHGV-0135692_2	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0135692_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0135692_2	Structural annotation	PF01726, MF_00732, TIGR02944, COG1321	NA	NA
UHGV-0135692_3	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0135692_3	PHROG	phrog_1324	transcriptional activator	transcription regulation
UHGV-0135692_3	UniRef90	UniRef90_A0A0A0H7T2	Crossover junction endodeoxyribonuclease rusA	NA
UHGV-0135692_3	eggNOG-mapper	754331.AEME01000001_gene3121	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0135692_3	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0135692_3	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0135692_3	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0135692_4	PHROG	phrog_6486	NA	unknown function
UHGV-0135692_4	UniRef90	UniRef90_A0A0A0H0P4	DNA-binding protein	NA
UHGV-0135692_4	eggNOG-mapper	1115653.S5MC03_9CAUD	KilA-N domain	NA
UHGV-0135692_4	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0135692_4	Structural annotation	PF04383, PF03374	NA	NA
UHGV-0135692_5	PHROG	phrog_96	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0135692_5	UniRef90	UniRef90_Q1R2A8	HNHc domain-containing protein	NA
UHGV-0135692_5	eggNOG-mapper	1147152.K7PJR3_9CAUD	NA	NA
UHGV-0135692_5	Pfam	PF06147	NA	DUF968
UHGV-0135692_5	Structural annotation	PF06147	NA	NA
UHGV-0135692_6	PHROG	phrog_79	anti-termination protein Q-like	transcription regulation
UHGV-0135692_6	UniRef90	UniRef90_A0A067H6U7	Antitermination protein	NA
UHGV-0135692_6	eggNOG-mapper	754331.AEME01000001_gene3070	Phage antitermination protein Q	NA
UHGV-0135692_6	Pfam	PF06530	Phage antitermination protein Q	Phage_antitermQ
UHGV-0135692_6	Structural annotation	PF06530, MF_00245, TIGR02999, COG2739	NA	NA
UHGV-0135692_8	KOfam	K04478	sgtB; monofunctional glycosyltransferase [EC:2.4.1.129]	NA
UHGV-0135692_8	UniRef90	UniRef90_A0A3Z9NXW2	Transglycosylase domain-containing protein	NA
UHGV-0135692_8	eggNOG-mapper	339671.Asuc_1153	Transglycosylase	NA
UHGV-0135692_8	Pfam	PF00912	Transglycosylase	Transgly
UHGV-0135692_8	COG	COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	NA
UHGV-0135692_9	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-0135692_9	UniRef90	UniRef90_A0A067H6U6	Phage holin, lambda family	NA
UHGV-0135692_9	eggNOG-mapper	66284.S5FM86_BPSF2	Pfam:Phage_holin_3_1	NA
UHGV-0135692_9	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0135692_9	NCBIFam	TIGR01594.1	phage holin, lambda family	NA
UHGV-0135692_9	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-0135692_10	PHROG	phrog_17029	NA	unknown function
UHGV-0135692_10	UniRef90	UniRef90_S5FV07	Endolysin	NA
UHGV-0135692_10	eggNOG-mapper	66284.S5FV07_BPSF2	defense response to bacterium	NA
UHGV-0135692_10	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0135692_10	HAMAP	MF_04109	Endolysin	NA
UHGV-0135692_10	Structural annotation	MF_04109, COG4678	NA	NA
UHGV-0135692_11	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0135692_11	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0135692_11	UniRef90	UniRef90_A0A2G4ACP0	Lysis protein	NA
UHGV-0135692_11	eggNOG-mapper	432198.K7P735_9CAUD	Bacteriophage Rz lysis protein	NA
UHGV-0135692_11	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0135692_11	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-0135692_11	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0135692_12	PHROG	phrog_23128	NA	unknown function
UHGV-0135692_12	UniRef90	UniRef90_UPI00032EBFBA	NA	NA
UHGV-0135692_12	eggNOG-mapper	1294142.CINTURNW_1045	NA	NA
UHGV-0135692_12	Pfam	PF19749	NA	DUF6236
UHGV-0135692_12	Structural annotation	PF19749	NA	NA
UHGV-0135692_13	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0135692_13	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0135692_13	UniRef90	UniRef90_A0A6D1JX09	HNH endonuclease	NA
UHGV-0135692_13	eggNOG-mapper	1225789.M1FQV2_9CAUD	nucleic acid binding	NA
UHGV-0135692_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0135692_13	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0135692_14	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0135692_14	UniRef90	UniRef90_A0A2A7U7F5	Phage terminase small subunit P27 family	NA
UHGV-0135692_14	eggNOG-mapper	55884.Q8SBI1_BPSF5	Phage terminase, small subunit	NA
UHGV-0135692_14	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0135692_14	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0135692_14	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0135692_15	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0135692_15	UniRef90	UniRef90_A0A0D8VBB7	Terminase	NA
UHGV-0135692_15	eggNOG-mapper	1407493.U5P0Q5_9CAUD	Phage Terminase	NA
UHGV-0135692_15	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0135692_15	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0135692_15	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0135692_16	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0135692_16	UniRef90	UniRef90_A0A376KNN8	NA	NA
UHGV-0135692_16	eggNOG-mapper	316407.4062725	NA	NA
UHGV-0135692_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0135692_17	UniRef90	UniRef90_Q8HAD4	Sb4	NA
UHGV-0135692_17	eggNOG-mapper	1440052.EAKF1_ch0464c	Phage portal protein	NA
UHGV-0135692_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0135692_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0135692_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0135692_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0135692_18	KOfam	K06904	NA	NA
UHGV-0135692_18	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0135692_18	UniRef90	UniRef90_Q8HAD3	Sb5	NA
UHGV-0135692_18	eggNOG-mapper	1440052.EAKF1_ch0463c	Caudovirus prohead serine protease	NA
UHGV-0135692_18	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0135692_18	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0135692_18	COG	COG3740	Phage head maturation protease	NA
UHGV-0135692_18	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0135692_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0135692_19	UniRef90	UniRef90_Q8HAD2	Sb6	NA
UHGV-0135692_19	eggNOG-mapper	1225789.M1FPN2_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0135692_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0135692_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0135692_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0135692_20	PHROG	phrog_1020	NA	unknown function
UHGV-0135692_20	UniRef90	UniRef90_Q8HAD1	Sb7	NA
UHGV-0135692_20	eggNOG-mapper	1216966.BAUC01000041_gene2872	NA	NA
UHGV-0135692_21	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0135692_21	UniRef90	UniRef90_A0A024L3U4	Phage DNA packaging protein	NA
UHGV-0135692_21	eggNOG-mapper	1407493.U5P072_9CAUD	Phage gp6-like head-tail connector protein	NA
UHGV-0135692_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0135692_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0135692_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0135692_22	PHROG	phrog_25	head closure Hc1	connector
UHGV-0135692_22	UniRef90	UniRef90_B7LJM4	Putative phage head-tail adaptor	NA
UHGV-0135692_22	eggNOG-mapper	754331.AEME01000001_gene208	Phage head-tail joining protein	NA
UHGV-0135692_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0135692_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0135692_22	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0135692_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0135692_23	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0135692_23	UniRef90	UniRef90_A0A0H3NMS1	Predicted bacteriophage protein	NA
UHGV-0135692_23	eggNOG-mapper	754331.AEME01000001_gene209	NA	NA
UHGV-0135692_23	Structural annotation	TIGR01725	NA	NA
UHGV-0135692_24	PHROG	phrog_209	portal protein	head and packaging
UHGV-0135692_24	UniRef90	UniRef90_A0A061KQS1	NA	NA
UHGV-0135692_24	eggNOG-mapper	754331.AEME01000001_gene210	NA	NA
UHGV-0135692_24	Structural annotation	PF09646	NA	NA
UHGV-0135692_25	PHROG	phrog_208	NA	unknown function
UHGV-0135692_25	UniRef90	UniRef90_J7Q674	NA	NA
UHGV-0135692_25	eggNOG-mapper	754331.AEME01000001_gene211	NA	NA
UHGV-0135692_25	Pfam	PF10948	NA	DUF2635
UHGV-0135692_25	Structural annotation	PF10948	NA	NA
UHGV-0135692_26	PHROG	phrog_165	tail sheath	tail
UHGV-0135692_26	UniRef90	UniRef90_Q8SBH2	Tail sheath protein	NA
UHGV-0135692_26	eggNOG-mapper	66284.S5FKL0_BPSF2	Phage tail sheath protein	NA
UHGV-0135692_26	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0135692_26	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0135692_26	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0135692_27	PHROG	phrog_185	tail tube protein	tail
UHGV-0135692_27	UniRef90	UniRef90_J7QME8	NA	NA
UHGV-0135692_27	eggNOG-mapper	1225789.M1FJ91_9CAUD	Phage tail tube protein	NA
UHGV-0135692_27	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0135692_27	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0135692_28	PHROG	phrog_166	tail protein	tail
UHGV-0135692_28	UniRef90	UniRef90_A0A0A0GYA8	NA	NA
UHGV-0135692_28	eggNOG-mapper	1407493.U5P0R5_9CAUD	Pfam:Phage_TAC_7	NA
UHGV-0135692_28	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0135692_28	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0135692_29	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0135692_29	UniRef90	UniRef90_U5P420	Probable tape measure protein	NA
UHGV-0135692_29	eggNOG-mapper	1407493.U5P420_9CAUD	amidase activity	NA
UHGV-0135692_29	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0135692_29	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0135692_29	Structural annotation	TIGR01760	NA	NA
UHGV-0135692_30	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0135692_30	UniRef90	UniRef90_B7LJN3	Tail/DNA circulation protein	NA
UHGV-0135692_30	eggNOG-mapper	1407493.U5P4I0_9CAUD	DNA circularisation protein N-terminus	NA
UHGV-0135692_30	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0135692_30	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0135692_31	PHROG	phrog_177	tail protein	tail
UHGV-0135692_31	UniRef90	UniRef90_E3PEH3	Putative phage tail protein	NA
UHGV-0135692_31	eggNOG-mapper	1407493.U5P0H6_9CAUD	NA	NA
UHGV-0135692_31	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0135692_31	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0135692_32	PHROG	phrog_28548	NA	unknown function
UHGV-0135692_32	UniRef90	UniRef90_A0A5F0A122	Baseplate assembly protein	NA
UHGV-0135692_32	eggNOG-mapper	66284.S5FXM5_BPSF2	Bacteriophage Mu Gp45 protein	NA
UHGV-0135692_32	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0135692_32	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0135692_32	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0135692_33	PHROG	phrog_180	tail protein	tail
UHGV-0135692_33	UniRef90	UniRef90_A0A093D1I0	Bacteriophage V tail protein	NA
UHGV-0135692_33	eggNOG-mapper	1225789.M1FPE5_9CAUD	Phage protein GP46	NA
UHGV-0135692_33	Pfam	PF07409	NA	GP46
UHGV-0135692_33	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0135692_34	PHROG	phrog_6	baseplate protein	tail
UHGV-0135692_34	UniRef90	UniRef90_A0A4C4LBQ7	Baseplate_J domain-containing protein	NA
UHGV-0135692_34	eggNOG-mapper	1225789.M1FQW3_9CAUD	Baseplate J-like protein	NA
UHGV-0135692_34	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0135692_34	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0135692_35	PHROG	phrog_203	tail protein	tail
UHGV-0135692_35	UniRef90	UniRef90_UPI0009006D48	NA	NA
UHGV-0135692_35	eggNOG-mapper	55884.O22003_BPSF5	NA	NA
UHGV-0135692_35	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0135692_35	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0135692_36	PHROG	phrog_18834	NA	unknown function
UHGV-0135692_36	UniRef90	UniRef90_UPI001117F6AB	carbohydrate kinase	NA
UHGV-0135692_36	eggNOG-mapper	316407.4062729	NA	NA
UHGV-0135692_37	PHROG	phrog_14370	NA	unknown function
UHGV-0135692_37	UniRef90	UniRef90_A0A2X3K6B4	Putative tail fiber assembly protein (Possibly partial)	NA
UHGV-0135692_37	eggNOG-mapper	198628.Dda3937_03863	Caudovirales tail fibre assembly protein, lambda gpK	NA
UHGV-0135692_38	KOfam	K16568	exoZ; exopolysaccharide production protein ExoZ	NA
UHGV-0135692_38	PHROG	phrog_3333	O-acetyltransferase	other
UHGV-0135692_38	UniRef90	UniRef90_A0A3Z8YZG0	Acyltransferase	NA
UHGV-0135692_38	eggNOG-mapper	314265.R2601_05388	transferase activity, transferring acyl groups other than amino-acyl groups	NA
UHGV-0135692_38	Pfam	PF01757	Acyltransferase family	Acyl_transf_3
UHGV-0135692_38	COG	COG1835	Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains	NA
UHGV-0135692_38	Structural annotation	PF01757, MF_01949, NF003014, COG1835	NA	NA
UHGV-0135692_39	eggNOG-mapper	910964.GEAM_3228	NA	NA
UHGV-0135692_40	PHROG	phrog_4350	NA	unknown function
UHGV-0135692_40	eggNOG-mapper	910964.GEAM_3227	NA	NA
UHGV-0135692_41	KOfam	K18900	bpeT; LysR family transcriptional regulator, regulator for bpeEF and oprC	NA
UHGV-0135692_41	PHROG	phrog_3736	NA	unknown function
UHGV-0135692_41	UniRef90	UniRef90_P75684	Putative LysR family substrate binding domain-containing protein YagP	NA
UHGV-0135692_41	eggNOG-mapper	481805.EcolC_3337	transcriptional regulator	NA
UHGV-0135692_41	Pfam	PF03466	LysR substrate binding domain	LysR_substrate
UHGV-0135692_41	COG	COG0583	DNA-binding transcriptional regulator, LysR family	NA