UHGV-0135807

Genome information

Genome length 28,970 bps

CDS count 38

Completeness 75.47% (medium-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135807
vOTU ID	vOTU-042467
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_357838
BioSample	SAMN02676211
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.17
Jumbo phage	No

Genome content
Genome length	28,970 bps
GC content	43.31%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	95.22%
Average CDS length	730.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135807_1	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0135807_1	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0135807_1	UniRef90	UniRef90_A0A417PG63	ParA family protein	NA
UHGV-0135807_1	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-0135807_1	Pfam	PF13614	AAA domain	AAA_31
UHGV-0135807_1	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0135807_1	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0135807_2	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0135807_2	PHROG	phrog_15077	NA	unknown function
UHGV-0135807_2	UniRef90	UniRef90_A0A417PG73	ParB domain-containing protein	NA
UHGV-0135807_2	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-0135807_2	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0135807_2	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0135807_2	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0135807_7	UniRef90	UniRef90_A0A417ANR7	LexA_DNA_bind domain-containing protein	NA
UHGV-0135807_7	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0135807_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0135807_7	Structural annotation	PF01726, MF_00732, TIGR00738, COG3388	NA	NA
UHGV-0135807_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0135807_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0135807_8	UniRef90	UniRef90_A0A417ANN0	Single-stranded DNA-binding protein	NA
UHGV-0135807_8	eggNOG-mapper	457412.RSAG_03244	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0135807_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0135807_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0135807_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0135807_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0135807_8	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0135807_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0135807_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0135807_9	UniRef90	UniRef90_A0A414EGC7	XRE family transcriptional regulator	NA
UHGV-0135807_9	eggNOG-mapper	883081.HMPREF9698_01491	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0135807_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135807_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0135807_9	Structural annotation	PF01381, NF041575, COG1396	NA	NA
UHGV-0135807_11	PHROG	phrog_7566	NA	unknown function
UHGV-0135807_11	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0135807_12	PHROG	phrog_6072	NA	unknown function
UHGV-0135807_13	PHROG	phrog_11237	NA	unknown function
UHGV-0135807_13	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-0135807_15	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0135807_15	UniRef90	UniRef90_A0A417PG49	NA	NA
UHGV-0135807_15	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0135807_15	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0135807_15	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0135807_16	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0135807_16	UniRef90	UniRef90_A0A1M6MVK9	Phage terminase, small subunit	NA
UHGV-0135807_16	eggNOG-mapper	1235792.C808_00082	NA	NA
UHGV-0135807_16	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0135807_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0135807_17	UniRef90	UniRef90_A0A417PG72	Terminase large subunit	NA
UHGV-0135807_17	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0135807_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0135807_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0135807_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0135807_17	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0135807_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0135807_18	UniRef90	UniRef90_A0A417PG64	Phage portal protein	NA
UHGV-0135807_18	eggNOG-mapper	1235792.C808_00084	Phage portal protein, HK97 family	NA
UHGV-0135807_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0135807_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0135807_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0135807_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0135807_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0135807_19	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0135807_19	UniRef90	UniRef90_A0A417PG92	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0135807_19	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0135807_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0135807_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0135807_19	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0135807_20	PHROG	phrog_10	major head protein	head and packaging
UHGV-0135807_20	UniRef90	UniRef90_A0A417PG62	Phage major capsid protein	NA
UHGV-0135807_20	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0135807_20	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0135807_20	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0135807_20	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0135807_20	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0135807_20	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0135807_21	PHROG	phrog_749	NA	unknown function
UHGV-0135807_21	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0135807_22	PHROG	phrog_19734	NA	unknown function
UHGV-0135807_22	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0135807_22	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0135807_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0135807_23	UniRef90	UniRef90_A0A417PG70	HK97 gp10 family phage protein	NA
UHGV-0135807_23	eggNOG-mapper	397287.C807_04036	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0135807_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0135807_23	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0135807_24	PHROG	phrog_78	tail terminator	connector
UHGV-0135807_24	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0135807_24	Structural annotation	PF20765	NA	NA
UHGV-0135807_25	PHROG	phrog_88	major tail protein	tail
UHGV-0135807_25	UniRef90	UniRef90_UPI00157107A9	phage tail protein	NA
UHGV-0135807_25	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0135807_25	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0135807_25	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0135807_26	PHROG	phrog_709	NA	unknown function
UHGV-0135807_26	eggNOG-mapper	610130.Closa_0750	NA	NA
UHGV-0135807_26	Structural annotation	PF11836	NA	NA
UHGV-0135807_27	PHROG	phrog_3033	NA	unknown function
UHGV-0135807_27	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0135807_27	eggNOG-mapper	1235799.C818_01010	NA	NA
UHGV-0135807_28	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0135807_28	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0135807_28	UniRef90	UniRef90_A0A417PG60	Phage tail tape measure protein	NA
UHGV-0135807_28	eggNOG-mapper	397288.C806_05080	Phage-related minor tail protein	NA
UHGV-0135807_28	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0135807_28	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0135807_28	COG	COG5283	Phage-related tail protein	NA
UHGV-0135807_28	Structural annotation	PF10145, COG5280	NA	NA
UHGV-0135807_29	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0135807_29	UniRef90	UniRef90_A5ZPK8	Putative phage tail component domain protein	NA
UHGV-0135807_29	eggNOG-mapper	411459.RUMOBE_00925	phage tail	NA
UHGV-0135807_29	Pfam	PF20753	Phage tail C-terminal domain	DUF6558_C
UHGV-0135807_29	COG	COG4722	Phage-related protein YomH	NA
UHGV-0135807_29	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0135807_30	PHROG	phrog_1401	NA	unknown function
UHGV-0135807_30	UniRef90	UniRef90_UPI0007099B7A	NA	NA
UHGV-0135807_30	eggNOG-mapper	272562.CA_C1880	NA	NA
UHGV-0135807_30	Structural annotation	PF07761	NA	NA
UHGV-0135807_31	PHROG	phrog_18110	NA	unknown function
UHGV-0135807_31	UniRef90	UniRef90_UPI00073E79CE	phage tail protein	NA
UHGV-0135807_31	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0135807_31	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0135807_31	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0135807_31	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0135807_31	COG	COG4926	Phage-related protein	NA
UHGV-0135807_31	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0135807_32	UniRef90	UniRef90_UPI001EE002C0	pyocin knob domain-containing protein	NA
UHGV-0135807_32	eggNOG-mapper	411459.RUMOBE_04220	Histidine kinase	NA
UHGV-0135807_32	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0135807_33	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0135807_33	PHROG	phrog_1	integrase	integration and excision
UHGV-0135807_33	UniRef90	UniRef90_A0A6L8Y1E4	Tyrosine-type recombinase/integrase	NA
UHGV-0135807_33	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0135807_33	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0135807_33	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0135807_33	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0135807_33	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0135807_34	PHROG	phrog_6616	tail protein	tail
UHGV-0135807_34	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0135807_34	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0135807_34	Structural annotation	PF03944	NA	NA
UHGV-0135807_35	PHROG	phrog_18444	NA	unknown function
UHGV-0135807_35	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0135807_35	eggNOG-mapper	1294142.CINTURNW_1707	NA	NA
UHGV-0135807_36	PHROG	phrog_1863	NA	unknown function
UHGV-0135807_36	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0135807_37	PHROG	phrog_443	holin	lysis
UHGV-0135807_37	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0135807_37	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0135807_37	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0135807_37	Structural annotation	PF16945	NA	NA
UHGV-0135807_38	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0135807_38	PHROG	phrog_3088	amidase	lysis
UHGV-0135807_38	UniRef90	UniRef90_A0A564VYB8	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-0135807_38	eggNOG-mapper	411459.RUMOBE_00909	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0135807_38	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0135807_38	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0135807_38	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0135807_38	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0135807_38	Structural annotation	PF01832, MF_04111, NF008758, TIGR02541, COG5632, COG1705	NA	NA