UHGV-0135835

Genome information

vOTU vOTU-020916

Genome length 32,131 bps

CDS count 53

Completeness 81.37% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135835
vOTU ID	vOTU-020916
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_365796
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.79
Jumbo phage	No

Genome content
Genome length	32,131 bps
GC content	50.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	87.29%
Average CDS length	533.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135835_1	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0135835_1	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0135835_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135835_4	PHROG	phrog_924	NA	unknown function
UHGV-0135835_4	UniRef90	UniRef90_U2SKB7	NA	NA
UHGV-0135835_4	Pfam	PF04448	NA	DUF551
UHGV-0135835_4	Structural annotation	NF041588	NA	NA
UHGV-0135835_7	PHROG	phrog_22543	NA	unknown function
UHGV-0135835_8	Structural annotation	PF09871, MF_01326_A, NF005100	NA	NA
UHGV-0135835_9	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0135835_9	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0135835_9	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0135835_9	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0135835_9	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0135835_13	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0135835_13	eggNOG-mapper	1226322.HMPREF1545_03523	NA	NA
UHGV-0135835_14	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0135835_14	UniRef90	UniRef90_A0A7W1N8Z0	Holliday junction endonuclease	NA
UHGV-0135835_14	eggNOG-mapper	28152.DJ57_2268	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0135835_14	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0135835_14	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0135835_16	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0135835_16	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0135835_16	UniRef90	UniRef90_A0A316PN60	Replicative DNA helicase	NA
UHGV-0135835_16	eggNOG-mapper	580331.Thit_2379	Participates in initiation and elongation during chromosome replication	NA
UHGV-0135835_16	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0135835_16	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0135835_16	COG	COG0305	Replicative DNA helicase	NA
UHGV-0135835_16	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0135835_17	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0135835_17	UniRef90	UniRef90_A3U276	Bacteriophage-related protein	NA
UHGV-0135835_17	eggNOG-mapper	1280689.AUJC01000011_gene1501	DnaD domain protein	NA
UHGV-0135835_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0135835_17	Structural annotation	PF13463, MF_01911, NF040642, COG1733	NA	NA
UHGV-0135835_18	Structural annotation	PF00436, MF_00984, TIGR04418, COG2965	NA	NA
UHGV-0135835_20	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0135835_20	UniRef90	UniRef90_A0A174RC35	RecT family	NA
UHGV-0135835_20	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0135835_20	Pfam	PF03837	RecT family	RecT
UHGV-0135835_20	Structural annotation	NF007351	NA	NA
UHGV-0135835_21	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0135835_21	eggNOG-mapper	1218075.BAYA01000003_gene606	NA	NA
UHGV-0135835_21	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0135835_26	UniRef90	UniRef90_A0A2A6ZGP6	Transcriptional regulator	NA
UHGV-0135835_26	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0135835_26	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0135835_26	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0135835_27	UniRef90	UniRef90_A0A8E3MXU9	Helix-turn-helix domain-containing protein	NA
UHGV-0135835_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135835_27	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-0135835_28	UniRef90	UniRef90_A0A1C6HD04	Helix-turn-helix	NA
UHGV-0135835_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135835_28	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0135835_28	Structural annotation	PF13560, MF_00535, NF041677, COG1396	NA	NA
UHGV-0135835_30	KOfam	K14059	int; integrase	NA
UHGV-0135835_30	PHROG	phrog_1	integrase	integration and excision
UHGV-0135835_30	UniRef90	UniRef90_A0A1C6FZN9	Site-specific tyrosine recombinase XerC	NA
UHGV-0135835_30	eggNOG-mapper	1507.HMPREF0262_00420	Belongs to the 'phage' integrase family	NA
UHGV-0135835_30	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0135835_30	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0135835_30	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0135835_36	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0135835_36	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0135835_36	Structural annotation	PF16677	NA	NA
UHGV-0135835_37	PHROG	phrog_156	portal protein	head and packaging
UHGV-0135835_37	eggNOG-mapper	1321782.HMPREF1986_00344	NA	NA
UHGV-0135835_37	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0135835_39	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0135835_39	UniRef90	UniRef90_A0A2V2FLL3	N4-gp56 family major capsid protein	NA
UHGV-0135835_39	eggNOG-mapper	935837.JAEK01000054_gene1469	NA	NA
UHGV-0135835_39	Pfam	PF13252	NA	DUF4043
UHGV-0135835_39	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0135835_39	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0135835_41	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0135835_41	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0135835_41	UniRef90	UniRef90_A0A316QRZ5	Terminase-like family protein	NA
UHGV-0135835_41	eggNOG-mapper	1449126.JQKL01000046_gene2072	NA	NA
UHGV-0135835_41	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0135835_41	COG	COG1783	Phage terminase large subunit	NA
UHGV-0135835_41	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0135835_43	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0135835_43	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0135835_45	PHROG	phrog_23208	virion structural protein	head and packaging
UHGV-0135835_45	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0135835_46	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0135835_49	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0135835_49	Structural annotation	PF14600, COG3979	NA	NA
UHGV-0135835_50	PHROG	phrog_918	NA	unknown function
UHGV-0135835_50	UniRef90	UniRef90_Q5ULN6	Orf78	NA
UHGV-0135835_50	eggNOG-mapper	298338.Q5ULN6_9CAUD	NA	NA
UHGV-0135835_50	Pfam	PF19791	NA	DUF6275
UHGV-0135835_50	Structural annotation	PF19791	NA	NA
UHGV-0135835_51	NCBIFam	TIGR01167.1	LPXTG cell wall anchor domain-containing protein	NA
UHGV-0135835_51	Structural annotation	PF12988	NA	NA
UHGV-0135835_52	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0135835_52	PHROG	phrog_329	minor tail protein	tail
UHGV-0135835_52	UniRef90	UniRef90_A0A2V2EEK9	NlpC/P60 domain-containing protein	NA
UHGV-0135835_52	eggNOG-mapper	357809.Cphy_0799	COG COG0791 Cell wall-associated hydrolases (invasion-associated proteins)	NA
UHGV-0135835_52	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0135835_52	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0135835_52	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0135835_52	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0135835_53	PHROG	phrog_199	holin	lysis
UHGV-0135835_53	UniRef90	UniRef90_A0A316PI30	Holin	NA
UHGV-0135835_53	eggNOG-mapper	580327.Tthe_0809	Bacteriophage holin family	NA
UHGV-0135835_53	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0135835_53	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0135835_53	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0135835_53	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA