UHGV-0135837

Genome information

Genome length 24,592 bps

CDS count 43

Completeness 58.14% (medium-quality)

geNomad score 0.9828

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135837
vOTU ID	vOTU-033631
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_365798
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	58.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9828
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.07
Jumbo phage	No

Genome content
Genome length	24,592 bps
GC content	53.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	97.12%
Average CDS length	559.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135837_1	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0135837_2	UniRef90	UniRef90_UPI00164EA432	SH3 domain-containing protein	NA
UHGV-0135837_2	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0135837_2	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0135837_2	Structural annotation	NF033743	NA	NA
UHGV-0135837_3	PHROG	phrog_13256	NA	unknown function
UHGV-0135837_3	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0135837_6	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0135837_6	Structural annotation	PF07484	NA	NA
UHGV-0135837_7	Structural annotation	PF20055, MF_03008, NF010730, COG3940	NA	NA
UHGV-0135837_8	PHROG	phrog_18725	NA	unknown function
UHGV-0135837_8	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0135837_11	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0135837_11	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0135837_13	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0135837_14	PHROG	phrog_13879	NA	unknown function
UHGV-0135837_14	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0135837_14	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0135837_15	PHROG	phrog_1194	NA	unknown function
UHGV-0135837_15	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0135837_15	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0135837_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0135837_16	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0135837_16	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0135837_16	COG	COG1511	NA	NA
UHGV-0135837_16	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0135837_17	PHROG	phrog_706	NA	unknown function
UHGV-0135837_17	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0135837_17	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0135837_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0135837_17	Structural annotation	PF06854	NA	NA
UHGV-0135837_18	PHROG	phrog_11299	NA	unknown function
UHGV-0135837_18	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0135837_18	Structural annotation	PF10666	NA	NA
UHGV-0135837_19	PHROG	phrog_3099	NA	unknown function
UHGV-0135837_19	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0135837_19	Structural annotation	TIGR02126	NA	NA
UHGV-0135837_20	PHROG	phrog_3266	tail completion	connector
UHGV-0135837_20	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0135837_20	Structural annotation	PF12691	NA	NA
UHGV-0135837_21	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0135837_21	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0135837_21	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0135837_21	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0135837_21	Structural annotation	PF11114	NA	NA
UHGV-0135837_22	PHROG	phrog_3366	NA	unknown function
UHGV-0135837_22	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0135837_22	Pfam	PF20536	NA	DUF6751
UHGV-0135837_22	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0135837_23	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0135837_23	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0135837_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0135837_24	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0135837_24	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0135837_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0135837_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0135837_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0135837_24	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0135837_25	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0135837_25	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0135837_27	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-0135837_27	eggNOG-mapper	1123489.AUAN01000010_gene361	NA	NA
UHGV-0135837_27	Structural annotation	PF20111	NA	NA
UHGV-0135837_28	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0135837_28	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0135837_28	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0135837_28	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0135837_28	COG	COG2369	NA	NA
UHGV-0135837_28	Structural annotation	PF06152	NA	NA
UHGV-0135837_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0135837_30	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-0135837_30	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0135837_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0135837_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0135837_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0135837_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0135837_31	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0135837_31	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0135837_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0135837_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0135837_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0135837_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0135837_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0135837_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0135837_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0135837_32	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-0135837_32	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-0135837_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0135837_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0135837_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0135837_33	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0135837_34	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0135837_34	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0135837_35	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0135837_35	UniRef90	UniRef90_A0A316M891	NA	NA
UHGV-0135837_35	eggNOG-mapper	1366055.S5MLS6_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0135837_35	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0135837_35	Structural annotation	PF18909	NA	NA
UHGV-0135837_38	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0135837_38	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0135837_38	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0135837_39	UniRef90	UniRef90_UPI0019D1E2CF	FAD-dependent thymidylate synthase	NA
UHGV-0135837_39	eggNOG-mapper	1410632.JHWW01000006_gene695	NA	NA
UHGV-0135837_39	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0135837_42	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0135837_42	Structural annotation	PF14354, TIGR03655	NA	NA