UHGV-0135839

Genome information

vOTU vOTU-020857

Genome length 20,556 bps

CDS count 31

Completeness 55.93% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135839
vOTU ID	vOTU-020857
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_365801
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.93% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.19
Jumbo phage	No

Genome content
Genome length	20,556 bps
GC content	56.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	94.40%
Average CDS length	628.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135839_1	PHROG	phrog_1066	NA	unknown function
UHGV-0135839_1	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0135839_1	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0135839_2	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0135839_2	UniRef90	UniRef90_UPI001D07C789	terminase large subunit	NA
UHGV-0135839_2	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0135839_2	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0135839_2	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0135839_2	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0135839_2	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0135839_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0135839_3	UniRef90	UniRef90_UPI001898FCCE	phage portal protein	NA
UHGV-0135839_3	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0135839_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0135839_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0135839_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0135839_4	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0135839_4	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0135839_4	UniRef90	UniRef90_A0A355BJ21	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0135839_4	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0135839_4	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0135839_4	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0135839_4	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0135839_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0135839_5	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-0135839_5	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0135839_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0135839_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0135839_5	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0135839_5	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0135839_6	PHROG	phrog_5223	neck protein	connector
UHGV-0135839_6	UniRef90	UniRef90_A0A6N8H2B4	DNA-packaging protein	NA
UHGV-0135839_6	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0135839_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0135839_7	UniRef90	UniRef90_A0A1F8UNT5	Phage head-tail adapter protein	NA
UHGV-0135839_7	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-0135839_7	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0135839_7	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0135839_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0135839_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0135839_8	eggNOG-mapper	649639.Bcell_2725	NA	NA
UHGV-0135839_8	Structural annotation	PF05657	NA	NA
UHGV-0135839_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0135839_9	Structural annotation	TIGR01725	NA	NA
UHGV-0135839_10	PHROG	phrog_88	major tail protein	tail
UHGV-0135839_10	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0135839_10	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0135839_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0135839_10	COG	COG5492	NA	NA
UHGV-0135839_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0135839_11	Structural annotation	PF11836	NA	NA
UHGV-0135839_12	PHROG	phrog_33680	NA	unknown function
UHGV-0135839_12	UniRef90	UniRef90_A3DFW3	Tail tape measure protein TP901 core region	NA
UHGV-0135839_12	eggNOG-mapper	498761.HM1_2873	nuclear chromosome segregation	NA
UHGV-0135839_12	COG	COG5283	Phage-related tail protein	NA
UHGV-0135839_12	Structural annotation	PF11570, PF10145, TIGR01760	NA	NA
UHGV-0135839_13	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0135839_13	UniRef90	UniRef90_A0A318XR64	Fibronectin type-III domain-containing protein	NA
UHGV-0135839_13	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0135839_13	Structural annotation	PF06995, PF19077, PF16794, PF00041, MF_04116, NF010681, COG3401, COG3499	NA	NA
UHGV-0135839_14	PHROG	phrog_26795	NA	unknown function
UHGV-0135839_14	eggNOG-mapper	1382315.JPOI01000001_gene271	NA	NA
UHGV-0135839_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0135839_15	Structural annotation	PF01176, MF_00085, TIGR00523, COG0361	NA	NA
UHGV-0135839_16	PHROG	phrog_33232	NA	unknown function
UHGV-0135839_16	UniRef90	UniRef90_A0A2U1B9L8	HicB-like protein involved in pilus formation	NA
UHGV-0135839_16	eggNOG-mapper	1118054.CAGW01000104_gene4617	HicB family	NA
UHGV-0135839_16	Pfam	PF05534	HicB family	HicB
UHGV-0135839_16	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0135839_16	Structural annotation	PF05534, NF041793, COG4226	NA	NA
UHGV-0135839_17	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0135839_17	UniRef90	UniRef90_A0A2U1B9M7	mRNA-degrading endonuclease RelE of RelBE toxin-antitoxin system	NA
UHGV-0135839_17	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-0135839_17	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-0135839_18	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0135839_19	PHROG	phrog_31538	NA	unknown function
UHGV-0135839_19	eggNOG-mapper	742740.HMPREF9474_02274	NA	NA
UHGV-0135839_20	PHROG	phrog_13589	NA	unknown function
UHGV-0135839_20	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0135839_21	PHROG	phrog_37900	NA	unknown function
UHGV-0135839_21	UniRef90	UniRef90_UPI00051B4A1C	NA	NA
UHGV-0135839_21	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0135839_21	Pfam	PF19789	NA	DUF6273
UHGV-0135839_21	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0135839_21	Structural annotation	PF19789, PF14686, NF040788, COG2512	NA	NA
UHGV-0135839_26	PHROG	phrog_6918	holin	lysis
UHGV-0135839_26	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0135839_26	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0135839_26	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0135839_26	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0135839_27	PHROG	phrog_14030	NA	unknown function
UHGV-0135839_27	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-0135839_27	eggNOG-mapper	1121866.AUGK01000003_gene1444	amidase activity	NA
UHGV-0135839_27	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0135839_28	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0135839_28	Structural annotation	PF10723	NA	NA