UHGV-0135849

Genome information

Genome length 47,034 bps

CDS count 86

Completeness 81.65% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135849
vOTU ID	vOTU-018551
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_385664
BioSample	SAMN04261227
Country	El Salvador
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.65% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.46
Jumbo phage	No

Genome content
Genome length	47,034 bps
GC content	48.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	86
CDS density	87.93%
Average CDS length	484.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135849_1	UniRef90	UniRef90_A0A7C6WAE4	Terminase_6C domain-containing protein (Fragment)	NA
UHGV-0135849_1	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0135849_1	COG	COG5410	NA	NA
UHGV-0135849_3	PHROG	phrog_64	portal protein	head and packaging
UHGV-0135849_3	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0135849_3	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0135849_3	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0135849_3	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0135849_4	UniRef90	UniRef90_A0A3E2TS79	NA	NA
UHGV-0135849_4	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0135849_4	Structural annotation	PF14359, NF040588, COG3613	NA	NA
UHGV-0135849_7	PHROG	phrog_29	major head protein	head and packaging
UHGV-0135849_7	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0135849_7	eggNOG-mapper	476272.RUMHYD_01946	Phage major capsid protein E	NA
UHGV-0135849_7	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0135849_7	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0135849_8	UniRef90	UniRef90_A0A7C7ERG0	DNA-packaging protein	NA
UHGV-0135849_8	Structural annotation	TIGR01560	NA	NA
UHGV-0135849_9	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0135849_10	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0135849_11	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0135849_12	PHROG	phrog_158	major tail protein	tail
UHGV-0135849_12	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0135849_12	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0135849_12	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0135849_13	UniRef90	UniRef90_A0A847YX95	NA	NA
UHGV-0135849_13	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0135849_13	Pfam	PF16478	NA	DUF5055
UHGV-0135849_13	Structural annotation	PF16478	NA	NA
UHGV-0135849_14	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0135849_15	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0135849_15	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0135849_15	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0135849_16	PHROG	phrog_1194	NA	unknown function
UHGV-0135849_16	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0135849_16	Pfam	PF20458	NA	DUF6711
UHGV-0135849_16	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0135849_17	PHROG	phrog_13879	NA	unknown function
UHGV-0135849_17	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0135849_17	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0135849_18	PHROG	phrog_18725	NA	unknown function
UHGV-0135849_18	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0135849_20	PHROG	phrog_23587	NA	unknown function
UHGV-0135849_20	eggNOG-mapper	471855.Shel_15450	NA	NA
UHGV-0135849_20	Structural annotation	MF_04106	NA	NA
UHGV-0135849_21	eggNOG-mapper	748224.HMPREF9436_00405	domain, Protein	NA
UHGV-0135849_21	COG	COG5492	NA	NA
UHGV-0135849_21	Structural annotation	COG4675	NA	NA
UHGV-0135849_23	Structural annotation	NF040910	NA	NA
UHGV-0135849_24	KOfam	K07273	acm; lysozyme	NA
UHGV-0135849_24	PHROG	phrog_291	endolysin	lysis
UHGV-0135849_24	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0135849_24	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0135849_24	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0135849_24	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0135849_24	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0135849_25	PHROG	phrog_1863	NA	unknown function
UHGV-0135849_25	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0135849_26	PHROG	phrog_15303	NA	unknown function
UHGV-0135849_31	PHROG	phrog_16490	NA	unknown function
UHGV-0135849_31	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0135849_32	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0135849_33	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0135849_36	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0135849_36	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0135849_37	KOfam	K13525	VCP, CDC48; transitional endoplasmic reticulum ATPase	NA
UHGV-0135849_37	PHROG	phrog_3757	NA	unknown function
UHGV-0135849_37	UniRef90	UniRef90_A0A4Z0Y6M2	ATP-dependent zinc metalloprotease FtsH 3	NA
UHGV-0135849_37	eggNOG-mapper	1235802.C823_01035	ATPase family associated with various cellular activities (AAA)	NA
UHGV-0135849_37	PADLOC	IetA_00002	NA	ietAS
UHGV-0135849_37	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0135849_37	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0135849_38	Structural annotation	PF07878	NA	NA
UHGV-0135849_40	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0135849_40	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0135849_40	UniRef90	UniRef90_A0A1G6FF50	Chromosome partitioning protein	NA
UHGV-0135849_40	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0135849_40	Pfam	PF13614	AAA domain	AAA_31
UHGV-0135849_40	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0135849_40	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0135849_41	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0135849_41	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0135849_41	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0135849_41	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0135849_41	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0135849_41	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0135849_41	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0135849_43	UniRef90	UniRef90_A0A2A7B6N3	HTH cro/C1-type domain-containing protein	NA
UHGV-0135849_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135849_43	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0135849_43	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0135849_47	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0135849_47	UniRef90	UniRef90_UPI001D05D211	helix-turn-helix transcriptional regulator	NA
UHGV-0135849_47	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0135849_47	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0135849_47	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0135849_48	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0135849_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135849_48	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0135849_49	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0135849_49	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0135849_49	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0135849_49	eggNOG-mapper	1449343.JQLQ01000002_gene1368	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0135849_49	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0135849_49	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0135849_49	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0135849_49	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0135849_49	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0135849_50	Structural annotation	PF10922	NA	NA
UHGV-0135849_52	Structural annotation	TIGR03826	NA	NA
UHGV-0135849_54	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0135849_54	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0135849_55	Structural annotation	PF14143	NA	NA
UHGV-0135849_56	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0135849_56	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0135849_58	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0135849_58	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0135849_58	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0135849_58	Pfam	PF13479	AAA domain	AAA_24
UHGV-0135849_58	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0135849_59	PHROG	phrog_18107	NA	unknown function
UHGV-0135849_59	UniRef90	UniRef90_UPI00058F46CC	NA	NA
UHGV-0135849_59	eggNOG-mapper	903814.ELI_1274	NA	NA
UHGV-0135849_59	Structural annotation	PF05037	NA	NA
UHGV-0135849_60	PHROG	phrog_4572	NA	unknown function
UHGV-0135849_60	eggNOG-mapper	397288.C806_00091	NA	NA
UHGV-0135849_61	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0135849_61	UniRef90	UniRef90_UPI001C00B13F	DNA cytosine methyltransferase	NA
UHGV-0135849_61	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0135849_61	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0135849_62	PHROG	phrog_35094	NA	unknown function
UHGV-0135849_62	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-0135849_64	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0135849_64	UniRef90	UniRef90_UPI000C78AB6D	Holliday junction resolvase RecU	NA
UHGV-0135849_64	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0135849_64	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0135849_66	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0135849_66	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0135849_66	UniRef90	UniRef90_A0A1Y4LU27	Adenylyl-sulfate reductase	NA
UHGV-0135849_66	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0135849_66	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0135849_66	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0135849_66	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0135849_66	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0135849_67	Structural annotation	PF09723	NA	NA
UHGV-0135849_71	Structural annotation	PF16677	NA	NA
UHGV-0135849_73	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0135849_73	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-0135849_73	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0135849_73	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0135849_84	UniRef90	UniRef90_UPI001AD832E5	Lar family restriction alleviation protein	NA
UHGV-0135849_84	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0135849_84	Structural annotation	PF14354	NA	NA
UHGV-0135849_85	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0135849_85	Pfam	PF19808	NA	DUF6291
UHGV-0135849_85	Structural annotation	PF19808	NA	NA
UHGV-0135849_86	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0135849_86	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0135849_86	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0135849_86	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0135849_86	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0135849_86	COG	COG0305	Replicative DNA helicase	NA
UHGV-0135849_86	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA