UHGV-0135886

Genome information

Genome length 32,555 bps

CDS count 51

Completeness 78.90% (medium-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135886
vOTU ID	vOTU-030423
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_385667
BioSample	SAMN04261227
Country	El Salvador
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.66
Jumbo phage	No

Genome content
Genome length	32,555 bps
GC content	53.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.09%
Average CDS length	594.12 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135886_1	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0135886_4	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0135886_4	UniRef90	UniRef90_A0A2A7AM44	Prophage_tail domain-containing protein	NA
UHGV-0135886_4	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0135886_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0135886_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0135886_4	COG	COG4926	Phage-related protein	NA
UHGV-0135886_4	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0135886_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0135886_5	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0135886_5	eggNOG-mapper	908340.HMPREF9406_2569	phage tail	NA
UHGV-0135886_5	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0135886_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0135886_5	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0135886_6	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0135886_6	UniRef90	UniRef90_A0A2A7ALS3	TMP_3 domain-containing protein	NA
UHGV-0135886_6	eggNOG-mapper	1224164.B843_03450	Tail protein	NA
UHGV-0135886_6	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0135886_6	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0135886_6	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0135886_6	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0135886_9	PHROG	phrog_88	major tail protein	tail
UHGV-0135886_9	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0135886_9	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0135886_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0135886_9	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0135886_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0135886_10	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0135886_10	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0135886_10	Structural annotation	TIGR01725	NA	NA
UHGV-0135886_11	eggNOG-mapper	999413.HMPREF1094_02005	NA	NA
UHGV-0135886_11	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0135886_12	PHROG	phrog_19734	NA	unknown function
UHGV-0135886_12	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0135886_12	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0135886_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0135886_13	PHROG	phrog_749	NA	unknown function
UHGV-0135886_13	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0135886_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0135886_14	UniRef90	UniRef90_A0A2A7B712	Phage major capsid protein	NA
UHGV-0135886_14	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0135886_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0135886_14	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0135886_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0135886_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0135886_14	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0135886_15	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0135886_15	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0135886_15	UniRef90	UniRef90_UPI001C0ECD60	Clp protease ClpP	NA
UHGV-0135886_15	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0135886_15	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0135886_15	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0135886_15	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0135886_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0135886_16	UniRef90	UniRef90_A0A2A7B6S8	Phage portal protein	NA
UHGV-0135886_16	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0135886_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0135886_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0135886_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0135886_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0135886_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0135886_17	UniRef90	UniRef90_A0A2A7ALT4	Terminase	NA
UHGV-0135886_17	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0135886_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0135886_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0135886_17	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0135886_18	PHROG	phrog_13845	NA	unknown function
UHGV-0135886_18	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0135886_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0135886_19	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0135886_19	UniRef90	UniRef90_A0A2A7B6I3	HNH domain-containing protein	NA
UHGV-0135886_19	eggNOG-mapper	610130.Closa_0739	HNH nucleases	NA
UHGV-0135886_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0135886_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0135886_25	Structural annotation	PF04545	NA	NA
UHGV-0135886_26	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0135886_26	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0135886_26	UniRef90	UniRef90_A0A2A7AMC5	ParB domain-containing protein	NA
UHGV-0135886_26	eggNOG-mapper	411471.SUBVAR_05842	ParB-like nuclease domain	NA
UHGV-0135886_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0135886_26	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0135886_26	Structural annotation	PF02195, MF_02015, TIGR03764, COG1475	NA	NA
UHGV-0135886_27	Structural annotation	PF20331, COG5264	NA	NA
UHGV-0135886_29	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0135886_29	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0135886_29	UniRef90	UniRef90_A0A2A7B6H3	AAA_31 domain-containing protein	NA
UHGV-0135886_29	eggNOG-mapper	411471.SUBVAR_05839	AAA domain	NA
UHGV-0135886_29	Pfam	PF13614	AAA domain	AAA_31
UHGV-0135886_29	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0135886_29	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0135886_30	eggNOG-mapper	869209.Tresu_2711	DnaD domain protein	NA
UHGV-0135886_30	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0135886_30	Structural annotation	PF04182, MF_01819, TIGR04176, COG5625	NA	NA
UHGV-0135886_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0135886_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0135886_31	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0135886_31	eggNOG-mapper	748224.HMPREF9436_00638	Single-stranded DNA-binding protein	NA
UHGV-0135886_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0135886_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0135886_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0135886_31	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0135886_31	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0135886_32	PHROG	phrog_7566	NA	unknown function
UHGV-0135886_32	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0135886_34	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0135886_34	eggNOG-mapper	411471.SUBVAR_05829	NA	NA
UHGV-0135886_34	Pfam	PF05772	NinB protein	NinB
UHGV-0135886_34	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0135886_35	PHROG	phrog_14970	NA	unknown function
UHGV-0135886_35	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0135886_35	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0135886_41	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0135886_44	Structural annotation	PF21291, TIGR03070, COG1476	NA	NA
UHGV-0135886_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0135886_45	UniRef90	UniRef90_A0A2A7AM72	HTH cro/C1-type domain-containing protein	NA
UHGV-0135886_45	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0135886_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0135886_45	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0135886_45	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0135886_47	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0135886_47	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0135886_47	UniRef90	UniRef90_A0A6N3J5K0	DNA-directed DNA polymerase	NA
UHGV-0135886_47	eggNOG-mapper	665956.HMPREF1032_02791	NA	NA
UHGV-0135886_47	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0135886_47	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0135886_47	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0135886_47	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0135886_47	Structural annotation	PF13361, PF00533, MF_00157, NF008746, COG2925	NA	NA
UHGV-0135886_50	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0135886_50	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0135886_50	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0135886_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0135886_50	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0135886_50	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0135886_51	KOfam	K14059	int; integrase	NA
UHGV-0135886_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0135886_51	UniRef90	UniRef90_A0A367GI93	Tyr recombinase domain-containing protein	NA
UHGV-0135886_51	eggNOG-mapper	1298920.KI911353_gene4877	Belongs to the 'phage' integrase family	NA
UHGV-0135886_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0135886_51	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0135886_51	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA