UHGV-0135945

Genome information

Genome length 37,089 bps

CDS count 60

Completeness 99.90% (high-quality)

geNomad score 0.9722

Prediction confidence Confident

Genome information
Genome ID	UHGV-0135945
vOTU ID	vOTU-014074
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_364279
BioSample	SAMN02712138
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9722
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.28
Jumbo phage	No

Genome content
Genome length	37,089 bps
GC content	62.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	90.10%
Average CDS length	559.20 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0135945_1	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0135945_1	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0135945_1	UniRef90	UniRef90_K0ZBQ0	Bro-N domain-containing protein	NA
UHGV-0135945_1	eggNOG-mapper	883077.HMPREF9241_01671	BRO family, N-terminal domain	NA
UHGV-0135945_1	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0135945_1	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0135945_1	COG	COG3617	Prophage antirepressor	NA
UHGV-0135945_1	Structural annotation	PF03374, COG3645	NA	NA
UHGV-0135945_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0135945_3	PHROG	phrog_2338	endolysin	lysis
UHGV-0135945_3	UniRef90	UniRef90_A0A3N0I9E4	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0135945_3	eggNOG-mapper	1120979.ATVB01000037_gene1492	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0135945_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0135945_3	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0135945_3	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0135945_3	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0135945_3	Structural annotation	PF01510, PF18342, MF_04111, NF008758, NF040670, COG5632	NA	NA
UHGV-0135945_4	PHROG	phrog_881	holin	lysis
UHGV-0135945_4	UniRef90	UniRef90_A0A4P6DUN1	Holin	NA
UHGV-0135945_4	eggNOG-mapper	1504822.CCNO01000015_gene626	Putative phage holin Dp-1	NA
UHGV-0135945_4	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0135945_4	Structural annotation	PF16938	NA	NA
UHGV-0135945_5	PHROG	phrog_4105	NA	unknown function
UHGV-0135945_5	UniRef90	UniRef90_A0A087A0L5	Phage minor structural protein	NA
UHGV-0135945_5	eggNOG-mapper	218140.BPSY_0948	NA	NA
UHGV-0135945_6	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0135945_7	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0135945_8	PHROG	phrog_21718	NA	unknown function
UHGV-0135945_9	KOfam	K07776	regX3; two-component system, OmpR family, response regulator RegX3	NA
UHGV-0135945_9	PHROG	phrog_731	NA	unknown function
UHGV-0135945_9	UniRef90	UniRef90_A0A7Y4RMG7	Response regulator transcription factor	NA
UHGV-0135945_9	eggNOG-mapper	1120971.AUCA01000001_gene1688	COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain	NA
UHGV-0135945_9	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0135945_9	Pfam	PF00486	Transcriptional regulatory protein, C terminal	Trans_reg_C
UHGV-0135945_9	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0135945_9	Structural annotation	PF00072, PF00486, MF_00981, NF000401, COG0745	NA	NA
UHGV-0135945_10	PHROG	phrog_13141	NA	unknown function
UHGV-0135945_10	UniRef90	UniRef90_A0A7K3I4P1	H_lectin domain-containing protein	NA
UHGV-0135945_10	eggNOG-mapper	78345.BMERY_0866	NA	NA
UHGV-0135945_10	Structural annotation	PF20747	NA	NA
UHGV-0135945_11	PHROG	phrog_538	minor tail protein	tail
UHGV-0135945_11	UniRef90	UniRef90_A0A087E4D2	Phage head fiber protein	NA
UHGV-0135945_11	eggNOG-mapper	469378.Ccur_02640	NA	NA
UHGV-0135945_11	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0135945_11	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0135945_12	UniRef90	UniRef90_A0A7Y0EUM5	Tail fiber protein	NA
UHGV-0135945_12	eggNOG-mapper	1111121.HMPREF1247_0852	NA	NA
UHGV-0135945_12	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0135945_13	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0135945_13	UniRef90	UniRef90_UPI0013ED7B29	tape measure protein	NA
UHGV-0135945_13	eggNOG-mapper	1437608.BBIA_2143	phage tail tape measure protein	NA
UHGV-0135945_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0135945_13	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0135945_13	COG	COG5412	Phage-related protein	NA
UHGV-0135945_13	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0135945_14	PHROG	phrog_706	NA	unknown function
UHGV-0135945_14	UniRef90	UniRef90_UPI0009B9DB3F	Gp15 family bacteriophage protein	NA
UHGV-0135945_14	eggNOG-mapper	1395513.P343_12620	Bacteriophage Gp15 protein	NA
UHGV-0135945_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0135945_14	Structural annotation	PF06854	NA	NA
UHGV-0135945_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0135945_17	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0135945_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0135945_18	UniRef90	UniRef90_UPI000F7A81E3	minor capsid protein	NA
UHGV-0135945_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0135945_18	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0135945_19	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0135945_20	eggNOG-mapper	445975.COLSTE_01109	NA	NA
UHGV-0135945_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-0135945_21	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0135945_21	eggNOG-mapper	936154.STP_1268	NA	NA
UHGV-0135945_21	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0135945_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0135945_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0135945_22	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0135945_23	PHROG	phrog_585	NA	unknown function
UHGV-0135945_23	UniRef90	UniRef90_UPI000F53A435	NA	NA
UHGV-0135945_23	eggNOG-mapper	1437610.BREU_1386	NA	NA
UHGV-0135945_23	Pfam	PF10711	NA	DUF2513
UHGV-0135945_23	Structural annotation	PF10711, TIGR03433, COG3355	NA	NA
UHGV-0135945_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0135945_25	UniRef90	UniRef90_A0A5K1IK12	Phage minor capsid protein 2	NA
UHGV-0135945_25	eggNOG-mapper	1111121.HMPREF1247_0842	Phage minor capsid protein 2	NA
UHGV-0135945_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0135945_25	COG	COG2369	NA	NA
UHGV-0135945_26	PHROG	phrog_533	portal protein	head and packaging
UHGV-0135945_26	UniRef90	UniRef90_UPI00189938B4	phage portal protein	NA
UHGV-0135945_26	eggNOG-mapper	471855.Shel_03460	phage minor capsid protein	NA
UHGV-0135945_26	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0135945_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0135945_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0135945_27	UniRef90	UniRef90_A0A1Y4G845	Terminase_3 domain-containing protein	NA
UHGV-0135945_27	eggNOG-mapper	1273103.NM10_06806	Phage terminase large subunit	NA
UHGV-0135945_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0135945_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0135945_28	PHROG	phrog_21498	NA	unknown function
UHGV-0135945_28	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0135945_28	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0135945_28	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0135945_28	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0135945_36	PHROG	phrog_21525	NA	unknown function
UHGV-0135945_39	Structural annotation	PF19808	NA	NA
UHGV-0135945_40	PHROG	phrog_15768	NA	unknown function
UHGV-0135945_40	Pfam	PF19808	NA	DUF6291
UHGV-0135945_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0135945_43	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0135945_43	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0135945_43	UniRef90	UniRef90_K0Z6V8	Single-stranded DNA-binding protein	NA
UHGV-0135945_43	eggNOG-mapper	742818.HMPREF9451_01652	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0135945_43	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0135945_43	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0135945_43	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0135945_43	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0135945_43	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0135945_44	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0135945_44	UniRef90	UniRef90_A0A1H8PXJ4	NUMOD4 motif-containing protein	NA
UHGV-0135945_44	eggNOG-mapper	1121097.JCM15093_1747	NUMOD4 motif	NA
UHGV-0135945_44	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0135945_44	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0135945_44	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0135945_44	COG	COG3617	Prophage antirepressor	NA
UHGV-0135945_44	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0135945_46	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0135945_46	UniRef90	UniRef90_A0A086Z1J6	Putative gp43	NA
UHGV-0135945_46	eggNOG-mapper	1111121.HMPREF1247_0809	NA	NA
UHGV-0135945_47	UniRef90	UniRef90_A0A8B0GPV3	NA	NA
UHGV-0135945_47	eggNOG-mapper	469378.Ccur_02980	NA	NA
UHGV-0135945_47	Pfam	PF07083	NA	DUF1351
UHGV-0135945_47	Structural annotation	PF07083	NA	NA
UHGV-0135945_48	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0135945_48	PHROG	phrog_18056	ParB-like partition nuclease	DNA, RNA and nucleotide metabolism
UHGV-0135945_48	UniRef90	UniRef90_A0A369MN63	ParB domain-containing protein	NA
UHGV-0135945_48	eggNOG-mapper	1125712.HMPREF1316_2383	ParB-like nuclease domain	NA
UHGV-0135945_48	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0135945_48	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0135945_48	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0135945_50	eggNOG-mapper	445975.COLSTE_02541	NA	NA
UHGV-0135945_51	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0135945_51	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0135945_51	UniRef90	UniRef90_R7CCV4	Endodeoxyribonuclease RusA	NA
UHGV-0135945_51	eggNOG-mapper	1226322.HMPREF1545_04070	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0135945_51	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0135945_51	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0135945_53	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0135945_53	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0135945_56	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0135945_56	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0135945_56	UniRef90	UniRef90_A0A1Q6E4H7	HTH cro/C1-type domain-containing protein	NA
UHGV-0135945_56	eggNOG-mapper	268407.PWYN_03190	Peptidase S24-like	NA
UHGV-0135945_56	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0135945_56	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0135945_56	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0135945_57	eggNOG-mapper	742722.HMPREF9463_00385	NA	NA
UHGV-0135945_58	PHROG	phrog_9605	NA	unknown function
UHGV-0135945_58	UniRef90	UniRef90_UPI0004E1D1BE	NA	NA
UHGV-0135945_58	eggNOG-mapper	546275.FUSPEROL_01655	NA	NA
UHGV-0135945_58	Pfam	PF12358	NA	DUF3644
UHGV-0135945_59	PHROG	phrog_9605	NA	unknown function
UHGV-0135945_59	UniRef90	UniRef90_UPI00189BFBF1	NA	NA
UHGV-0135945_59	eggNOG-mapper	1235798.C817_00616	NA	NA
UHGV-0135945_59	Pfam	PF18740	EC042_2821-like Restriction Endonuclease-like domain	EC042_2821
UHGV-0135945_60	KOfam	K14059	int; integrase	NA
UHGV-0135945_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0135945_60	UniRef90	UniRef90_A0A2K2UBR2	Tyr recombinase domain-containing protein	NA
UHGV-0135945_60	eggNOG-mapper	1437603.BMON_1125	DNA integration	NA
UHGV-0135945_60	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0135945_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0135945_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0135945_60	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA