UHGV-0136028

Genome information

Genome length 44,542 bps

CDS count 72

Completeness 99.90% (high-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136028
vOTU ID	vOTU-008848
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_362602
BioSample	SAMN02712135
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	77.92
Jumbo phage	No

Genome content
Genome length	44,542 bps
GC content	41.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	92.82%
Average CDS length	578.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136028_1	KOfam	K14059	int; integrase	NA
UHGV-0136028_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0136028_1	UniRef90	UniRef90_D4L3N3	Site-specific recombinase XerD	NA
UHGV-0136028_1	eggNOG-mapper	1235790.C805_00008	Phage integrase family	NA
UHGV-0136028_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0136028_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0136028_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0136028_3	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0136028_3	UniRef90	UniRef90_A0A349ZUJ4	Ig-like domain-containing protein (Fragment)	NA
UHGV-0136028_3	eggNOG-mapper	1410624.JNKK01000014_gene1631	Bacterial Ig-like domain (group 2)	NA
UHGV-0136028_3	Pfam	PF20578	Atrophied bacterial Ig domain	aBig_2
UHGV-0136028_3	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0136028_3	COG	COG2304	Secreted protein containing bacterial Ig-like domain and vWFA domain	NA
UHGV-0136028_4	PHROG	phrog_87	metallo-protease	other
UHGV-0136028_4	UniRef90	UniRef90_A0A3R6K8Y6	Peptidase_M78 domain-containing protein	NA
UHGV-0136028_4	eggNOG-mapper	553973.CLOHYLEM_07298	IrrE N-terminal-like domain	NA
UHGV-0136028_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0136028_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0136028_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0136028_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0136028_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0136028_5	UniRef90	UniRef90_A0A173S886	Transcriptional repressor DicA	NA
UHGV-0136028_5	eggNOG-mapper	483218.BACPEC_01181	Peptidase S24-like	NA
UHGV-0136028_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136028_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0136028_5	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0136028_6	UniRef90	UniRef90_UPI0015F7B8EC	XRE family transcriptional regulator	NA
UHGV-0136028_6	eggNOG-mapper	1321814.HMPREF9089_00909	Helix-turn-helix domain of resolvase	NA
UHGV-0136028_6	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0136028_10	PHROG	phrog_4621	NA	unknown function
UHGV-0136028_10	eggNOG-mapper	1196322.A370_02090	NA	NA
UHGV-0136028_11	PHROG	phrog_36464	NA	unknown function
UHGV-0136028_11	eggNOG-mapper	1235798.C817_05488	NA	NA
UHGV-0136028_11	Structural annotation	PF09035	NA	NA
UHGV-0136028_12	UniRef90	UniRef90_UPI0015D1C8FF	lectin-1	NA
UHGV-0136028_12	Structural annotation	COG3296	NA	NA
UHGV-0136028_15	Structural annotation	PF21596, TIGR03081	NA	NA
UHGV-0136028_17	PHROG	phrog_674	NA	unknown function
UHGV-0136028_17	UniRef90	UniRef90_A0A3R6B153	NA	NA
UHGV-0136028_17	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0136028_17	Pfam	PF07083	NA	DUF1351
UHGV-0136028_17	Structural annotation	PF07083	NA	NA
UHGV-0136028_18	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0136028_18	UniRef90	UniRef90_UPI001C031D02	ERF family protein	NA
UHGV-0136028_18	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0136028_18	Pfam	PF04404	ERF superfamily	ERF
UHGV-0136028_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0136028_18	Structural annotation	PF04404, MF_00984, TIGR00607, COG5055	NA	NA
UHGV-0136028_19	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0136028_19	UniRef90	UniRef90_A0A285PU94	Recombinase NinB	NA
UHGV-0136028_19	eggNOG-mapper	1410650.JHWL01000003_gene2850	NA	NA
UHGV-0136028_19	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0136028_20	PHROG	phrog_7566	NA	unknown function
UHGV-0136028_20	UniRef90	UniRef90_UPI001C0181E7	phosphoenolpyruvate carboxykinase	NA
UHGV-0136028_21	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0136028_21	UniRef90	UniRef90_UPI0018A6ABED	Rha family transcriptional regulator	NA
UHGV-0136028_21	eggNOG-mapper	1499683.CCFF01000014_gene3944	ORF6C domain	NA
UHGV-0136028_21	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0136028_21	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0136028_21	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0136028_21	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0136028_21	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0136028_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0136028_22	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0136028_22	UniRef90	UniRef90_A0A173S8N6	Holliday junction resolvase	NA
UHGV-0136028_22	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0136028_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0136028_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0136028_23	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0136028_23	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0136028_23	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0136028_23	eggNOG-mapper	476272.RUMHYD_03359	DNA-dependent DNA replication	NA
UHGV-0136028_23	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0136028_23	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0136028_23	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0136028_27	UniRef90	UniRef90_C7GC26	NA	NA
UHGV-0136028_27	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0136028_27	Pfam	PF04448	NA	DUF551
UHGV-0136028_28	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0136028_28	eggNOG-mapper	476272.RUMHYD_03348	NA	NA
UHGV-0136028_30	UniRef90	UniRef90_A0A414RA52	YopX domain-containing protein	NA
UHGV-0136028_30	Pfam	PF09643	YopX protein	YopX
UHGV-0136028_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0136028_32	UniRef90	UniRef90_UPI001186151F	Lar family restriction alleviation protein	NA
UHGV-0136028_32	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0136028_33	PHROG	phrog_874	NA	unknown function
UHGV-0136028_33	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0136028_33	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0136028_35	PHROG	phrog_2232	NA	unknown function
UHGV-0136028_35	UniRef90	UniRef90_UPI001D087871	NA	NA
UHGV-0136028_35	eggNOG-mapper	633697.EubceDRAFT1_1462	NA	NA
UHGV-0136028_35	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0136028_35	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0136028_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0136028_36	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0136028_36	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0136028_36	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0136028_36	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0136028_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0136028_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0136028_36	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0136028_38	eggNOG-mapper	411459.RUMOBE_01111	NA	NA
UHGV-0136028_40	UniRef90	UniRef90_A0A7W3XTE8	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA
UHGV-0136028_41	UniRef90	UniRef90_C7GC16	NA	NA
UHGV-0136028_41	Pfam	PF20037	NA	DUF6440
UHGV-0136028_41	Structural annotation	PF20037	NA	NA
UHGV-0136028_42	UniRef90	UniRef90_A0A3R6LT65	ABC transporter ATP-binding protein	NA
UHGV-0136028_43	PHROG	phrog_8680	NA	unknown function
UHGV-0136028_43	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-0136028_43	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0136028_43	Pfam	PF14386	NA	DUF4417
UHGV-0136028_43	Structural annotation	PF14386	NA	NA
UHGV-0136028_44	PHROG	phrog_9479	NA	unknown function
UHGV-0136028_44	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-0136028_44	Structural annotation	PF15529	NA	NA
UHGV-0136028_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0136028_45	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0136028_45	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-0136028_45	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0136028_45	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0136028_45	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0136028_45	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0136028_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0136028_45	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0136028_46	PHROG	phrog_1233	NA	unknown function
UHGV-0136028_46	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0136028_46	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0136028_47	PHROG	phrog_533	portal protein	head and packaging
UHGV-0136028_47	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0136028_47	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0136028_47	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0136028_49	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0136028_49	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0136028_49	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0136028_49	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0136028_49	Structural annotation	PF11114	NA	NA
UHGV-0136028_50	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0136028_50	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0136028_50	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0136028_50	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0136028_50	COG	COG2369	NA	NA
UHGV-0136028_50	Structural annotation	PF06152	NA	NA
UHGV-0136028_51	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-0136028_52	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0136028_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0136028_52	UniRef90	UniRef90_A0A3R6KSN7	XRE family transcriptional regulator	NA
UHGV-0136028_52	eggNOG-mapper	572479.Hprae_0053	PFAM metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0136028_52	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0136028_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136028_52	COG	COG2206	HD-GYP domain, c-di-GMP phosphodiesterase class II (or its inactivated variant)	NA
UHGV-0136028_52	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0136028_53	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0136028_53	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0136028_53	UniRef90	UniRef90_A0A3R6KB83	XRE family transcriptional regulator	NA
UHGV-0136028_53	eggNOG-mapper	1196322.A370_02181	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0136028_53	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0136028_53	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0136028_54	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0136028_54	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0136028_54	UniRef90	UniRef90_A0A415TWU5	AntA domain-containing protein	NA
UHGV-0136028_54	eggNOG-mapper	1235802.C823_01054	AntA/AntB antirepressor	NA
UHGV-0136028_54	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0136028_54	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0136028_54	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0136028_58	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0136028_58	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0136028_59	PHROG	phrog_247	major head protein	head and packaging
UHGV-0136028_59	UniRef90	UniRef90_A0A3R6GNQ1	Phage coat protein	NA
UHGV-0136028_59	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0136028_59	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0136028_59	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0136028_59	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0136028_60	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0136028_60	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0136028_61	PHROG	phrog_3366	NA	unknown function
UHGV-0136028_61	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0136028_61	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0136028_62	PHROG	phrog_3266	tail completion	connector
UHGV-0136028_62	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0136028_62	Structural annotation	PF12691	NA	NA
UHGV-0136028_63	PHROG	phrog_3099	NA	unknown function
UHGV-0136028_63	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0136028_64	PHROG	phrog_11299	NA	unknown function
UHGV-0136028_64	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0136028_64	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-0136028_64	Pfam	PF20378	NA	DUF6673
UHGV-0136028_64	Structural annotation	PF10666	NA	NA
UHGV-0136028_65	PHROG	phrog_706	NA	unknown function
UHGV-0136028_65	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0136028_65	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0136028_65	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0136028_65	Structural annotation	PF06854	NA	NA
UHGV-0136028_66	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0136028_66	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0136028_66	COG	COG5412	Phage-related protein	NA
UHGV-0136028_67	PHROG	phrog_1194	NA	unknown function
UHGV-0136028_67	eggNOG-mapper	397290.C810_05238	NA	NA
UHGV-0136028_67	Pfam	PF20458	NA	DUF6711
UHGV-0136028_67	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0136028_68	PHROG	phrog_18190	NA	unknown function
UHGV-0136028_68	UniRef90	UniRef90_C7GBZ4	Peptidase S74 domain-containing protein	NA
UHGV-0136028_68	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0136028_68	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0136028_68	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0136028_70	PHROG	phrog_17196	kinase	other
UHGV-0136028_70	UniRef90	UniRef90_D4L3U0	Peptidase S74 domain-containing protein	NA
UHGV-0136028_70	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0136028_70	Pfam	PF03903	Phage T4 tail fibre	Phage_T4_gp36
UHGV-0136028_70	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0136028_71	PHROG	phrog_1863	NA	unknown function
UHGV-0136028_71	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0136028_72	PHROG	phrog_1129	holin	lysis
UHGV-0136028_72	UniRef90	UniRef90_A0A3R6D6C4	Holin	NA
UHGV-0136028_72	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0136028_72	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0136028_72	Structural annotation	PF06946	NA	NA