UHGV-0136041

Genome information

Genome length 40,933 bps

CDS count 62

Completeness 99.90% (high-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136041
vOTU ID	vOTU-078531
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_383317
BioSample	SAMN04209250
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.14
Jumbo phage	No

Genome content
Genome length	40,933 bps
GC content	39.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.14%
Average CDS length	598.74 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136041_1	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0136041_1	UniRef90	UniRef90_UPI00051B7C8B	Abi family protein	NA
UHGV-0136041_1	eggNOG-mapper	1235792.C808_03102	Abi-like protein	NA
UHGV-0136041_1	PADLOC	AbiD	AbiD	Abi
UHGV-0136041_1	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0136041_1	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0136041_1	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0136041_2	eggNOG-mapper	97139.C824_00065	NA	NA
UHGV-0136041_2	AcrCatalog	cluster_61476	NA	NA
UHGV-0136041_2	Structural annotation	PF16538	NA	NA
UHGV-0136041_3	PHROG	phrog_87	metallo-protease	other
UHGV-0136041_3	UniRef90	UniRef90_A0A1M6TSV0	Peptidase_M78 domain-containing protein	NA
UHGV-0136041_3	eggNOG-mapper	742723.HMPREF9477_00938	Zn peptidase	NA
UHGV-0136041_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0136041_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0136041_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0136041_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0136041_4	UniRef90	UniRef90_A0A1Y4F0F1	Transcriptional regulator	NA
UHGV-0136041_4	eggNOG-mapper	1235798.C817_04757	NA	NA
UHGV-0136041_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0136041_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136041_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0136041_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0136041_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0136041_5	UniRef90	UniRef90_R5R078	HTH cro/C1-type domain-containing protein	NA
UHGV-0136041_5	eggNOG-mapper	553973.CLOHYLEM_07297	Transcriptional	NA
UHGV-0136041_5	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0136041_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136041_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0136041_5	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0136041_6	UniRef90	UniRef90_R5R755	HTH cro/C1-type domain-containing protein	NA
UHGV-0136041_6	eggNOG-mapper	1132442.KB889752_gene869	Helix-turn-helix XRE-family like proteins	NA
UHGV-0136041_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136041_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0136041_7	PHROG	phrog_32192	NA	unknown function
UHGV-0136041_8	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0136041_8	Pfam	PF11195	NA	DUF2829
UHGV-0136041_12	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0136041_12	PHROG	phrog_24603	NA	unknown function
UHGV-0136041_12	UniRef90	UniRef90_A0A4V2UQ37	Sporulation initiation factor Spo0A-like protein	NA
UHGV-0136041_12	eggNOG-mapper	411470.RUMGNA_01611	Sporulation initiation factor Spo0A C terminal	NA
UHGV-0136041_12	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0136041_12	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0136041_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0136041_13	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0136041_13	eggNOG-mapper	1232453.BAIF02000027_gene4199	NA	NA
UHGV-0136041_13	Pfam	PF00075	RNase H	RNase_H
UHGV-0136041_15	PHROG	phrog_17690	NA	unknown function
UHGV-0136041_15	eggNOG-mapper	1235798.C817_03495	NA	NA
UHGV-0136041_16	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0136041_16	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0136041_16	UniRef90	UniRef90_A0A4R3JSC6	Chromosome partitioning protein	NA
UHGV-0136041_16	eggNOG-mapper	411902.CLOBOL_03890	AAA domain	NA
UHGV-0136041_16	Pfam	PF13614	AAA domain	AAA_31
UHGV-0136041_16	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0136041_16	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0136041_17	PHROG	phrog_15077	NA	unknown function
UHGV-0136041_17	eggNOG-mapper	1232452.BAIB02000007_gene1643	NA	NA
UHGV-0136041_22	eggNOG-mapper	1235792.C808_05356	NA	NA
UHGV-0136041_23	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0136041_23	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0136041_23	UniRef90	UniRef90_A0A8B3BSU1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0136041_23	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0136041_23	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0136041_23	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0136041_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0136041_23	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0136041_25	PHROG	phrog_8684	NA	unknown function
UHGV-0136041_25	UniRef90	UniRef90_S2Z040	YopX domain-containing protein	NA
UHGV-0136041_25	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0136041_25	Pfam	PF09643	YopX protein	YopX
UHGV-0136041_25	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0136041_25	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0136041_27	PHROG	phrog_15198	NA	unknown function
UHGV-0136041_27	UniRef90	UniRef90_A0A3A6C6F1	NA	NA
UHGV-0136041_27	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0136041_27	Pfam	PF04448	NA	DUF551
UHGV-0136041_29	PHROG	phrog_6568	NA	unknown function
UHGV-0136041_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0136041_30	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0136041_30	eggNOG-mapper	610130.Closa_1384	NA	NA
UHGV-0136041_30	Structural annotation	MF_00307	NA	NA
UHGV-0136041_31	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0136041_31	UniRef90	UniRef90_A0A829NTQ4	HNH domain-containing protein	NA
UHGV-0136041_31	eggNOG-mapper	411459.RUMOBE_00940	HNH endonuclease	NA
UHGV-0136041_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0136041_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0136041_31	Structural annotation	PF05766	NA	NA
UHGV-0136041_32	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0136041_32	UniRef90	UniRef90_UPI000E4F2EB1	phage terminase small subunit P27 family	NA
UHGV-0136041_32	eggNOG-mapper	1235792.C808_03067	Phage terminase, small subunit	NA
UHGV-0136041_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0136041_32	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0136041_32	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0136041_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0136041_33	PHROG	phrog_10517	terminase large subunit	head and packaging
UHGV-0136041_33	UniRef90	UniRef90_UPI001CF962BC	terminase large subunit	NA
UHGV-0136041_33	eggNOG-mapper	1235792.C808_03066	Phage Terminase	NA
UHGV-0136041_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0136041_34	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0136041_34	UniRef90	UniRef90_F7JW13	Phage terminase	NA
UHGV-0136041_34	eggNOG-mapper	97139.C824_05973	Terminase	NA
UHGV-0136041_34	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0136041_34	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0136041_34	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0136041_34	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0136041_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0136041_35	UniRef90	UniRef90_F7JWF4	HK97 family phage portal protein	NA
UHGV-0136041_35	eggNOG-mapper	1235792.C808_03065	Phage portal protein	NA
UHGV-0136041_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0136041_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0136041_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0136041_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0136041_36	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0136041_36	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0136041_36	UniRef90	UniRef90_F7JW12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0136041_36	eggNOG-mapper	411459.RUMOBE_00936	Belongs to the peptidase S14 family	NA
UHGV-0136041_36	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0136041_36	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0136041_36	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0136041_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-0136041_37	UniRef90	UniRef90_A0A829NVJ5	HK97 family phage major capsid protein	NA
UHGV-0136041_37	eggNOG-mapper	97139.C824_05970	Phage major capsid protein, HK97 family	NA
UHGV-0136041_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0136041_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0136041_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0136041_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0136041_39	PHROG	phrog_5223	neck protein	connector
UHGV-0136041_39	eggNOG-mapper	1235792.C808_03062	NA	NA
UHGV-0136041_39	Structural annotation	TIGR01560	NA	NA
UHGV-0136041_40	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0136041_40	eggNOG-mapper	97139.C824_05968	NA	NA
UHGV-0136041_40	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0136041_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0136041_41	UniRef90	UniRef90_A0A829NR05	HK97 gp10 family phage protein	NA
UHGV-0136041_41	eggNOG-mapper	97139.C824_05967	Phage protein, HK97 gp10 family	NA
UHGV-0136041_41	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0136041_41	Structural annotation	TIGR01725	NA	NA
UHGV-0136041_42	UniRef90	UniRef90_UPI000E471C89	phage tail protein	NA
UHGV-0136041_42	eggNOG-mapper	97139.C824_05966	NA	NA
UHGV-0136041_42	Structural annotation	PF05657	NA	NA
UHGV-0136041_43	PHROG	phrog_88	major tail protein	tail
UHGV-0136041_43	UniRef90	UniRef90_A0A7G9GHG5	Major tail protein	NA
UHGV-0136041_43	eggNOG-mapper	1123075.AUDP01000020_gene1518	phage major tail protein, phi13 family	NA
UHGV-0136041_43	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0136041_43	COG	COG5492	NA	NA
UHGV-0136041_43	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0136041_44	eggNOG-mapper	1123075.AUDP01000020_gene1519	NA	NA
UHGV-0136041_44	Structural annotation	PF11836	NA	NA
UHGV-0136041_45	eggNOG-mapper	411459.RUMOBE_00928	NA	NA
UHGV-0136041_47	eggNOG-mapper	476272.RUMHYD_01904	NA	NA
UHGV-0136041_48	UniRef90	UniRef90_R9JJZ1	RHH_1 domain-containing protein	NA
UHGV-0136041_48	eggNOG-mapper	397287.C807_01320	NA	NA
UHGV-0136041_48	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0136041_49	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0136041_49	PHROG	phrog_5218	NA	unknown function
UHGV-0136041_49	UniRef90	UniRef90_A0A829NMZ9	PhageMin_Tail domain-containing protein	NA
UHGV-0136041_49	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-0136041_49	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0136041_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0136041_49	Structural annotation	PF10145, PF05384, NF033930, COG5280	NA	NA
UHGV-0136041_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0136041_50	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-0136041_50	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0136041_50	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0136041_50	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0136041_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-0136041_50	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0136041_51	PHROG	phrog_13289	tail protein	tail
UHGV-0136041_51	UniRef90	UniRef90_A0A1Y4GWP8	Prophage_tail domain-containing protein	NA
UHGV-0136041_51	eggNOG-mapper	1232452.BAIB02000007_gene1613	NlpC/P60 family	NA
UHGV-0136041_51	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0136041_51	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0136041_51	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0136041_51	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0136041_51	Structural annotation	PF14594, TIGR01665, COG4926, COG3942	NA	NA
UHGV-0136041_52	UniRef90	UniRef90_UPI000D7A7A43	collagen-like protein	NA
UHGV-0136041_52	eggNOG-mapper	537007.BLAHAN_05252	NA	NA
UHGV-0136041_52	Structural annotation	PF10651, COG5456	NA	NA
UHGV-0136041_53	PHROG	phrog_16164	NA	unknown function
UHGV-0136041_53	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0136041_53	Structural annotation	PF10651, TIGR02657	NA	NA
UHGV-0136041_54	eggNOG-mapper	742733.HMPREF9469_00973	NA	NA
UHGV-0136041_54	Structural annotation	PF09136	NA	NA
UHGV-0136041_55	UniRef90	UniRef90_A0A1I0BM57	Subtilase family protein	NA
UHGV-0136041_55	Pfam	PF00082	Subtilase family	Peptidase_S8
UHGV-0136041_56	PHROG	phrog_24103	NA	unknown function
UHGV-0136041_56	eggNOG-mapper	1118055.CAGU01000013_gene761	NA	NA
UHGV-0136041_58	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0136041_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0136041_58	UniRef90	UniRef90_A0A7U9SXN6	Tyrosine recombinase XerD	NA
UHGV-0136041_58	eggNOG-mapper	553973.CLOHYLEM_04448	Belongs to the 'phage' integrase family	NA
UHGV-0136041_58	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0136041_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0136041_58	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0136041_58	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0136041_61	PHROG	phrog_199	holin	lysis
UHGV-0136041_61	UniRef90	UniRef90_S2YKE1	Toxin secretion/phage lysis holin	NA
UHGV-0136041_61	eggNOG-mapper	1232453.BAIF02000059_gene1615	Bacteriophage holin family	NA
UHGV-0136041_61	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0136041_61	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0136041_61	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0136041_61	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0136041_62	UniRef90	UniRef90_A0A6L9H4R6	N-acetylmuramoyl-L-alanine amidase (Fragment)	NA
UHGV-0136041_62	eggNOG-mapper	97139.C824_00247	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0136041_62	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA