UHGV-0136077

Genome information

Genome length 37,635 bps

CDS count 55

Completeness 99.90% (high-quality)

geNomad score 0.9698

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136077
vOTU ID	vOTU-066307
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_382632
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9698
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.9
Jumbo phage	No

Genome content
Genome length	37,635 bps
GC content	42.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.41%
Average CDS length	630.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136077_1	KOfam	K14059	int; integrase	NA
UHGV-0136077_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0136077_1	UniRef90	UniRef90_A0A3D5T9L7	Site-specific integrase	NA
UHGV-0136077_1	eggNOG-mapper	585501.HMPREF6123_0870	Phage integrase family	NA
UHGV-0136077_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0136077_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0136077_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0136077_2	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0136077_2	UniRef90	UniRef90_A0A174JNM3	Abortive infection bacteriophage resistance protein	NA
UHGV-0136077_2	eggNOG-mapper	411490.ANACAC_00817	Abi-like protein	NA
UHGV-0136077_2	PADLOC	AbiD	AbiD	Abi
UHGV-0136077_2	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0136077_2	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0136077_2	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0136077_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0136077_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0136077_3	UniRef90	UniRef90_A0A1Y4R6E2	Repressor LexA	NA
UHGV-0136077_3	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0136077_3	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0136077_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0136077_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0136077_3	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0136077_4	UniRef90	UniRef90_A0A6B0E1H1	NA	NA
UHGV-0136077_4	eggNOG-mapper	1215915.BN193_09250	NA	NA
UHGV-0136077_4	Pfam	PF05339	NA	DUF739
UHGV-0136077_4	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0136077_7	PHROG	phrog_585	NA	unknown function
UHGV-0136077_7	UniRef90	UniRef90_UPI00077FE6A9	NA	NA
UHGV-0136077_7	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0136077_7	Pfam	PF10711	NA	DUF2513
UHGV-0136077_7	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0136077_8	UniRef90	UniRef90_R6WAU3	HTH cro/C1-type domain-containing protein	NA
UHGV-0136077_8	eggNOG-mapper	1341695.BBOMB_1069	Helix-turn-helix XRE-family like proteins	NA
UHGV-0136077_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136077_8	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0136077_10	UniRef90	UniRef90_A0A3D5TAJ2	HTH cro/C1-type domain-containing protein	NA
UHGV-0136077_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136077_10	Structural annotation	PF21291, MF_00535, NF041951, COG1513	NA	NA
UHGV-0136077_11	UniRef90	UniRef90_A0A7X8YSW0	3D domain-containing protein	NA
UHGV-0136077_11	COG	COG3583	NA	NA
UHGV-0136077_11	Structural annotation	MF_02071, TIGR00413, COG3584	NA	NA
UHGV-0136077_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0136077_13	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0136077_13	eggNOG-mapper	903814.ELI_3133	NA	NA
UHGV-0136077_13	Structural annotation	PF21578	NA	NA
UHGV-0136077_14	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0136077_14	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0136077_14	UniRef90	UniRef90_A0A3D5T970	RNase H type-1 domain-containing protein	NA
UHGV-0136077_14	eggNOG-mapper	1122134.KB893650_gene1011	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0136077_14	Pfam	PF00075	RNase H	RNase_H
UHGV-0136077_14	COG	COG0328	Ribonuclease HI	NA
UHGV-0136077_14	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0136077_15	eggNOG-mapper	411902.CLOBOL_05699	NA	NA
UHGV-0136077_16	PHROG	phrog_4433	NA	unknown function
UHGV-0136077_16	eggNOG-mapper	411902.CLOBOL_05698	regulation of DNA-templated transcription, elongation	NA
UHGV-0136077_16	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0136077_16	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0136077_17	PHROG	phrog_8470	NA	unknown function
UHGV-0136077_17	UniRef90	UniRef90_A0A1I3G898	PcfJ-like protein	NA
UHGV-0136077_17	eggNOG-mapper	742733.HMPREF9469_00219	PcfJ-like protein	NA
UHGV-0136077_17	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0136077_17	Structural annotation	PF14284	NA	NA
UHGV-0136077_19	PHROG	phrog_15077	NA	unknown function
UHGV-0136077_19	UniRef90	UniRef90_A0A3E3IZW1	NA	NA
UHGV-0136077_19	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0136077_19	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0136077_20	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0136077_20	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0136077_20	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0136077_21	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0136077_21	PHROG	phrog_5696	NA	unknown function
UHGV-0136077_21	UniRef90	UniRef90_A0A3D5TAK3	Restriction endonuclease subunit M	NA
UHGV-0136077_21	eggNOG-mapper	395019.Bmul_5588	N-6 DNA Methylase	NA
UHGV-0136077_21	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0136077_21	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0136077_21	Structural annotation	COG0286	NA	NA
UHGV-0136077_22	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0136077_22	PHROG	phrog_1	integrase	integration and excision
UHGV-0136077_22	UniRef90	UniRef90_A0A3D5T917	Integrase	NA
UHGV-0136077_22	eggNOG-mapper	565653.EGBG_01953	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0136077_22	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0136077_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0136077_22	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0136077_22	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0136077_23	PHROG	phrog_874	NA	unknown function
UHGV-0136077_23	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0136077_23	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0136077_23	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0136077_24	PHROG	phrog_9958	NA	unknown function
UHGV-0136077_24	UniRef90	UniRef90_A0A3D5T9N7	NA	NA
UHGV-0136077_24	Pfam	PF19789	NA	DUF6273
UHGV-0136077_24	Structural annotation	PF19789	NA	NA
UHGV-0136077_26	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0136077_26	UniRef90	UniRef90_R6E548	Prophage pi1 protein 29	NA
UHGV-0136077_26	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0136077_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0136077_30	Pfam	PF07374	NA	DUF1492
UHGV-0136077_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0136077_30	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0136077_32	UniRef90	UniRef90_UPI001C1098AE	chemotaxis protein	NA
UHGV-0136077_32	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0136077_32	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0136077_33	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0136077_33	UniRef90	UniRef90_R6M5E4	Prophage LambdaBa04 GP54	NA
UHGV-0136077_33	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0136077_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0136077_34	PHROG	phrog_1066	NA	unknown function
UHGV-0136077_34	eggNOG-mapper	1235793.C809_01916	NA	NA
UHGV-0136077_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0136077_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0136077_35	UniRef90	UniRef90_A0A174XWB0	Phage terminase, large subunit	NA
UHGV-0136077_35	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0136077_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0136077_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0136077_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0136077_35	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0136077_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0136077_36	UniRef90	UniRef90_R6DSU5	Prophage LambdaBa04 portal protein	NA
UHGV-0136077_36	eggNOG-mapper	1111134.HMPREF1253_0385	Phage portal protein	NA
UHGV-0136077_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0136077_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0136077_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0136077_37	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0136077_37	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0136077_37	UniRef90	UniRef90_R6DK29	Gp4	NA
UHGV-0136077_37	eggNOG-mapper	396359.Q0SPK3_9CAUD	Clp protease	NA
UHGV-0136077_37	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0136077_37	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0136077_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0136077_38	UniRef90	UniRef90_R6DUL6	Putative prophage LambdaBa04 major capsid protein	NA
UHGV-0136077_38	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0136077_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0136077_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0136077_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0136077_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0136077_39	PHROG	phrog_5223	neck protein	connector
UHGV-0136077_39	UniRef90	UniRef90_B6W9Y5	Putative phage DNA packaging protein	NA
UHGV-0136077_39	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-0136077_39	Structural annotation	TIGR01560	NA	NA
UHGV-0136077_40	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0136077_40	UniRef90	UniRef90_A0A1T5AM50	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0136077_40	eggNOG-mapper	1160721.RBI_I01580	head-tail adaptor	NA
UHGV-0136077_40	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0136077_40	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0136077_40	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0136077_40	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0136077_41	UniRef90	UniRef90_A0A0J8Z1A5	Phage protein, HK97 gp10 family	NA
UHGV-0136077_41	eggNOG-mapper	457396.CSBG_01052	NA	NA
UHGV-0136077_41	Structural annotation	TIGR01725	NA	NA
UHGV-0136077_42	PHROG	phrog_957	head protein	head and packaging
UHGV-0136077_42	Structural annotation	PF11367, COG4722	NA	NA
UHGV-0136077_43	PHROG	phrog_885	major tail protein	tail
UHGV-0136077_43	UniRef90	UniRef90_UPI001C11708A	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0136077_43	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-0136077_43	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0136077_43	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0136077_44	PHROG	phrog_1021	NA	unknown function
UHGV-0136077_46	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0136077_46	UniRef90	UniRef90_A0A373N0I0	Phage tail tape measure protein	NA
UHGV-0136077_46	eggNOG-mapper	1122146.AUHP01000010_gene1066	Phage tail tape measure protein	NA
UHGV-0136077_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0136077_46	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0136077_46	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0136077_46	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0136077_47	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0136077_47	Pfam	PF20458	NA	DUF6711
UHGV-0136077_47	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0136077_48	PHROG	phrog_18190	NA	unknown function
UHGV-0136077_48	UniRef90	UniRef90_A0A6L5Y189	Peptidase S74 domain-containing protein	NA
UHGV-0136077_48	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0136077_48	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0136077_52	PHROG	phrog_199	holin	lysis
UHGV-0136077_52	UniRef90	UniRef90_A0A3D5T9K4	Holin	NA
UHGV-0136077_52	eggNOG-mapper	483218.BACPEC_01140	Bacteriophage holin family	NA
UHGV-0136077_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0136077_52	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0136077_52	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0136077_52	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0136077_53	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0136077_53	PHROG	phrog_7	endolysin	lysis
UHGV-0136077_53	UniRef90	UniRef90_A0A3D5TB01	Lysozyme	NA
UHGV-0136077_53	eggNOG-mapper	1235797.C816_03700	Phage lysozyme	NA
UHGV-0136077_53	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0136077_53	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0136077_53	HAMAP	MF_04110	Endolysin	NA
UHGV-0136077_53	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-0136077_54	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0136077_54	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0136077_54	UniRef90	UniRef90_A0A3D5T8Y4	Toxin-antitoxin system, toxin component, HicA family protein	NA
UHGV-0136077_54	eggNOG-mapper	592026.GCWU0000282_000315	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0136077_54	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0136077_54	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0136077_55	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0136077_55	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0136077_55	UniRef90	UniRef90_A0A3D5T8Y5	HicB family protein	NA
UHGV-0136077_55	eggNOG-mapper	883109.HMPREF0380_00919	NA	NA
UHGV-0136077_55	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0136077_55	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0136077_55	Structural annotation	PF15919, COG1598	NA	NA