UHGV-0136095

Genome information

Genome length 40,152 bps

CDS count 71

Completeness 69.68% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136095
vOTU ID	vOTU-024667
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_368973
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.86
Jumbo phage	No

Genome content
Genome length	40,152 bps
GC content	47.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	88.58%
Average CDS length	503.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136095_3	PHROG	phrog_29	major head protein	head and packaging
UHGV-0136095_3	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0136095_3	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0136095_3	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0136095_3	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0136095_4	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0136095_4	Structural annotation	TIGR01560	NA	NA
UHGV-0136095_5	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0136095_7	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0136095_8	PHROG	phrog_158	major tail protein	tail
UHGV-0136095_8	UniRef90	UniRef90_UPI001D087591	phage tail protein	NA
UHGV-0136095_8	eggNOG-mapper	1449343.JQLQ01000002_gene1514	Phage tail tube protein, TTP	NA
UHGV-0136095_8	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0136095_9	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0136095_9	Pfam	PF16478	NA	DUF5055
UHGV-0136095_9	Structural annotation	PF16478	NA	NA
UHGV-0136095_10	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0136095_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0136095_11	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0136095_11	Pfam	PF05746	DALR anticodon binding domain	DALR_1
UHGV-0136095_11	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0136095_12	PHROG	phrog_1194	NA	unknown function
UHGV-0136095_12	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0136095_12	Pfam	PF20458	NA	DUF6711
UHGV-0136095_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0136095_13	PHROG	phrog_13879	NA	unknown function
UHGV-0136095_13	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0136095_13	Pfam	PF19789	NA	DUF6273
UHGV-0136095_13	Structural annotation	PF14594, PF19789, PF03256, PF09134, NF033848, COG3500, COG5156	NA	NA
UHGV-0136095_14	PHROG	phrog_18725	NA	unknown function
UHGV-0136095_14	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0136095_15	PHROG	phrog_9534	head protein	head and packaging
UHGV-0136095_15	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0136095_17	PHROG	phrog_1382	NA	unknown function
UHGV-0136095_17	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0136095_18	KOfam	K07273	acm; lysozyme	NA
UHGV-0136095_18	PHROG	phrog_291	endolysin	lysis
UHGV-0136095_18	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0136095_18	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0136095_18	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0136095_18	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0136095_18	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0136095_20	PHROG	phrog_15303	NA	unknown function
UHGV-0136095_20	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0136095_25	PHROG	phrog_16490	NA	unknown function
UHGV-0136095_25	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0136095_26	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0136095_27	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0136095_29	eggNOG-mapper	1415774.U728_1699	NA	NA
UHGV-0136095_30	PHROG	phrog_7070	NA	unknown function
UHGV-0136095_30	eggNOG-mapper	1195072.M4HPW0_9CAUD	NA	NA
UHGV-0136095_31	Structural annotation	NF010188	NA	NA
UHGV-0136095_32	KOfam	K13525	VCP, CDC48; transitional endoplasmic reticulum ATPase	NA
UHGV-0136095_32	PHROG	phrog_3757	NA	unknown function
UHGV-0136095_32	UniRef90	UniRef90_A0A4Z0Y6M2	ATP-dependent zinc metalloprotease FtsH 3	NA
UHGV-0136095_32	eggNOG-mapper	768710.DesyoDRAFT_1087	ATPase family associated with various cellular activities (AAA)	NA
UHGV-0136095_32	PADLOC	IetA_00002	NA	ietAS
UHGV-0136095_32	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0136095_32	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0136095_32	Structural annotation	PF00004, MF_00553, TIGR01242, COG1222	NA	NA
UHGV-0136095_33	Structural annotation	PF07878	NA	NA
UHGV-0136095_35	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0136095_35	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0136095_35	UniRef90	UniRef90_A0A349QN03	Chromosome partitioning protein ParA	NA
UHGV-0136095_35	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0136095_35	Pfam	PF13614	AAA domain	AAA_31
UHGV-0136095_35	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0136095_35	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0136095_36	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0136095_36	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0136095_36	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0136095_36	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0136095_36	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0136095_36	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0136095_36	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0136095_38	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0136095_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136095_38	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0136095_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0136095_40	UniRef90	UniRef90_A0A373XY93	XRE family transcriptional regulator	NA
UHGV-0136095_40	eggNOG-mapper	665956.HMPREF1032_02614	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0136095_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0136095_40	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0136095_41	UniRef90	UniRef90_A0A7X1LWA7	XRE family transcriptional regulator	NA
UHGV-0136095_41	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0136095_41	Structural annotation	TIGR03070	NA	NA
UHGV-0136095_43	Structural annotation	PF10922	NA	NA
UHGV-0136095_45	Structural annotation	TIGR03826	NA	NA
UHGV-0136095_47	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0136095_47	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0136095_48	Structural annotation	PF14143	NA	NA
UHGV-0136095_50	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0136095_50	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0136095_50	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0136095_50	Pfam	PF04404	ERF superfamily	ERF
UHGV-0136095_50	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0136095_51	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0136095_51	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0136095_51	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0136095_51	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0136095_51	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0136095_51	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0136095_51	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0136095_51	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0136095_51	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0136095_52	PHROG	phrog_4572	NA	unknown function
UHGV-0136095_52	eggNOG-mapper	397288.C806_00091	NA	NA
UHGV-0136095_53	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0136095_53	UniRef90	UniRef90_UPI0013F6DA29	DNA cytosine methyltransferase	NA
UHGV-0136095_53	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0136095_53	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0136095_53	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0136095_54	PHROG	phrog_35094	NA	unknown function
UHGV-0136095_54	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-0136095_56	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0136095_56	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0136095_56	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0136095_56	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0136095_61	Structural annotation	PF16677	NA	NA
UHGV-0136095_62	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0136095_62	PHROG	phrog_200	lipoprotein	other
UHGV-0136095_62	UniRef90	UniRef90_D4KCF4	Membrane protease subunits, stomatin/prohibitin homologs	NA
UHGV-0136095_62	eggNOG-mapper	657322.FPR_23460	prohibitin homologues	NA
UHGV-0136095_62	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0136095_62	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0136095_62	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0136095_64	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0136095_64	eggNOG-mapper	596329.HMPREF0631_0252	restriction endonuclease	NA
UHGV-0136095_64	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0136095_64	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0136095_65	PHROG	phrog_3136	NA	unknown function
UHGV-0136095_65	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0136095_65	eggNOG-mapper	394503.Ccel_3165	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0136095_65	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0136095_65	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0136095_67	Structural annotation	PF01775, MF_00273, NF001981	NA	NA