UHGV-0136098

Genome information

Genome length 41,269 bps

CDS count 67

Completeness 67.15% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136098
vOTU ID	vOTU-032214
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_368965
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	67.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	60.14
Jumbo phage	No

Genome content
Genome length	41,269 bps
GC content	53.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	91.38%
Average CDS length	566.46 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136098_1	PHROG	phrog_27197	NA	unknown function
UHGV-0136098_1	eggNOG-mapper	445970.ALIPUT_01221	DNA-templated transcription, initiation	NA
UHGV-0136098_1	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0136098_1	Structural annotation	NF007410	NA	NA
UHGV-0136098_3	Pfam	PF04448	NA	DUF551
UHGV-0136098_4	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0136098_5	Structural annotation	PF07453	NA	NA
UHGV-0136098_8	PHROG	phrog_14970	NA	unknown function
UHGV-0136098_8	eggNOG-mapper	397291.C804_03856	double-strand break repair protein	NA
UHGV-0136098_8	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0136098_8	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0136098_8	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0136098_9	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0136098_9	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0136098_9	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0136098_9	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0136098_10	PHROG	phrog_7566	NA	unknown function
UHGV-0136098_10	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0136098_10	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0136098_11	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0136098_11	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0136098_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0136098_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0136098_12	UniRef90	UniRef90_A0A810QFR8	Single-stranded DNA-binding protein	NA
UHGV-0136098_12	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0136098_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0136098_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0136098_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0136098_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0136098_12	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0136098_13	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0136098_13	UniRef90	UniRef90_UPI000F4ADF08	phage replication protein	NA
UHGV-0136098_13	eggNOG-mapper	1449126.JQKL01000046_gene2061	NA	NA
UHGV-0136098_13	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0136098_14	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0136098_14	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0136098_14	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0136098_14	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0136098_14	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0136098_14	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0136098_14	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0136098_16	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0136098_16	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0136098_16	UniRef90	UniRef90_A0A845MVG4	Helicase	NA
UHGV-0136098_16	eggNOG-mapper	592028.GCWU000321_01359	DEAD-like helicases superfamily	NA
UHGV-0136098_16	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0136098_16	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0136098_16	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0136098_16	Structural annotation	PF06862, MF_01821, NF003426, COG0553	NA	NA
UHGV-0136098_17	KOfam	K24451	zim; modification methylase	NA
UHGV-0136098_17	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0136098_17	UniRef90	UniRef90_A0A845MWG4	Methyltransferase	NA
UHGV-0136098_17	eggNOG-mapper	1120971.AUCA01000053_gene371	DNA methylase	NA
UHGV-0136098_17	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0136098_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0136098_17	COG	COG0863	DNA modification methylase	NA
UHGV-0136098_17	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0136098_18	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0136098_18	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0136098_18	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0136098_18	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0136098_18	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0136098_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0136098_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0136098_18	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0136098_19	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0136098_19	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0136098_19	UniRef90	UniRef90_UPI001EDCEC57	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0136098_19	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0136098_19	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0136098_19	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0136098_19	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0136098_19	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0136098_25	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0136098_25	Structural annotation	TIGR01636	NA	NA
UHGV-0136098_29	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0136098_29	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0136098_29	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0136098_29	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0136098_29	Structural annotation	PF16677	NA	NA
UHGV-0136098_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0136098_30	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0136098_30	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0136098_30	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0136098_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0136098_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0136098_30	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0136098_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0136098_30	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0136098_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0136098_31	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0136098_31	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0136098_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0136098_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0136098_32	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0136098_32	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0136098_32	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0136098_32	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0136098_32	COG	COG2369	NA	NA
UHGV-0136098_32	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0136098_35	PHROG	phrog_1233	NA	unknown function
UHGV-0136098_35	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0136098_35	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0136098_36	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0136098_36	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0136098_36	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0136098_36	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0136098_36	Structural annotation	PF06810	NA	NA
UHGV-0136098_37	PHROG	phrog_212	major head protein	head and packaging
UHGV-0136098_37	UniRef90	UniRef90_A0A2V2FIN1	Phage capsid protein	NA
UHGV-0136098_37	eggNOG-mapper	1232449.BAHV02000010_gene2714	NA	NA
UHGV-0136098_37	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0136098_38	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0136098_38	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0136098_39	PHROG	phrog_3366	NA	unknown function
UHGV-0136098_39	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0136098_39	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0136098_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0136098_40	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0136098_40	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0136098_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0136098_40	Structural annotation	PF11114	NA	NA
UHGV-0136098_41	PHROG	phrog_3266	tail completion	connector
UHGV-0136098_41	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0136098_41	Structural annotation	PF12691	NA	NA
UHGV-0136098_42	PHROG	phrog_3099	NA	unknown function
UHGV-0136098_42	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0136098_42	Structural annotation	TIGR02126	NA	NA
UHGV-0136098_43	PHROG	phrog_11299	NA	unknown function
UHGV-0136098_43	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0136098_43	Structural annotation	PF10666	NA	NA
UHGV-0136098_44	PHROG	phrog_706	NA	unknown function
UHGV-0136098_44	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0136098_44	eggNOG-mapper	1235797.C816_04184	Bacteriophage Gp15 protein	NA
UHGV-0136098_44	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0136098_44	Structural annotation	PF06854	NA	NA
UHGV-0136098_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0136098_46	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0136098_46	eggNOG-mapper	693746.OBV_18190	domain protein	NA
UHGV-0136098_46	COG	COG1511	NA	NA
UHGV-0136098_46	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0136098_47	PHROG	phrog_1194	NA	unknown function
UHGV-0136098_47	UniRef90	UniRef90_A0A4U9RD70	Lj965 prophage protein	NA
UHGV-0136098_47	eggNOG-mapper	469596.HMPREF9488_01317	NA	NA
UHGV-0136098_47	Pfam	PF20458	NA	DUF6711
UHGV-0136098_47	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0136098_48	PHROG	phrog_6616	tail protein	tail
UHGV-0136098_48	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0136098_48	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0136098_49	PHROG	phrog_372	tail protein	tail
UHGV-0136098_49	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0136098_49	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0136098_49	Pfam	PF05895	NA	DUF859
UHGV-0136098_49	COG	COG4675	Phage tail collar domain	NA
UHGV-0136098_49	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0136098_52	PHROG	phrog_199	holin	lysis
UHGV-0136098_52	UniRef90	UniRef90_UPI001BEFC888	Phage holin family protein	NA
UHGV-0136098_52	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0136098_52	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0136098_52	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0136098_52	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0136098_52	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0136098_53	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0136098_53	PHROG	phrog_1493	endolysin	lysis
UHGV-0136098_53	UniRef90	UniRef90_A0A350TLR9	Peptidoglycan-binding domain-containing protein	NA
UHGV-0136098_53	eggNOG-mapper	1504823.CCMM01000008_gene1019	Ami_2	NA
UHGV-0136098_53	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0136098_53	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0136098_53	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0136098_53	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG3023	NA	NA
UHGV-0136098_54	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0136098_57	PHROG	phrog_22984	NA	unknown function
UHGV-0136098_58	PHROG	phrog_16490	NA	unknown function
UHGV-0136098_58	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0136098_59	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0136098_60	UniRef90	UniRef90_A0A843GWV6	Rubrerythrin domain-containing protein	NA
UHGV-0136098_61	KOfam	K14059	int; integrase	NA
UHGV-0136098_61	PHROG	phrog_1	integrase	integration and excision
UHGV-0136098_61	UniRef90	UniRef90_A0A1C5W824	Integrase	NA
UHGV-0136098_61	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0136098_61	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0136098_61	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0136098_61	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0136098_62	UniRef90	UniRef90_A0A8D9UHA6	Helix-turn-helix XRE-family like protein	NA
UHGV-0136098_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136098_62	Structural annotation	PF12844, MF_00535, TIGR03070, COG1396	NA	NA
UHGV-0136098_63	UniRef90	UniRef90_A0A3C1K3F5	HTH cro/C1-type domain-containing protein	NA
UHGV-0136098_63	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0136098_63	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0136098_64	UniRef90	UniRef90_A0A810QCI5	HTH cro/C1-type domain-containing protein	NA
UHGV-0136098_64	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0136098_64	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0136098_64	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0136098_65	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0136098_65	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0136098_67	PHROG	phrog_4433	NA	unknown function
UHGV-0136098_67	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0136098_67	COG	COG5164	Transcription elongation factor SPT5	NA