UHGV-0136124

Genome information

Genome length 42,099 bps

CDS count 73

Completeness 99.90% (high-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136124
vOTU ID	vOTU-014829
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_342637
BioSample	SAMN02333929
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.55
Jumbo phage	No

Genome content
Genome length	42,099 bps
GC content	51.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	91.01%
Average CDS length	528.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136124_2	PHROG	phrog_30034	NA	unknown function
UHGV-0136124_2	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0136124_2	eggNOG-mapper	1996.JOFO01000021_gene2549	chitin catabolic process	NA
UHGV-0136124_2	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0136124_2	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0136124_3	PHROG	phrog_18725	NA	unknown function
UHGV-0136124_3	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0136124_4	eggNOG-mapper	742738.HMPREF9460_01382	NA	NA
UHGV-0136124_4	Structural annotation	PF13620, NF040788, COG2512	NA	NA
UHGV-0136124_6	UniRef90	UniRef90_R6I1X1	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	NA
UHGV-0136124_6	eggNOG-mapper	552398.HMPREF0866_01159	NA	NA
UHGV-0136124_7	PHROG	phrog_1863	NA	unknown function
UHGV-0136124_7	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0136124_9	PHROG	phrog_443	holin	lysis
UHGV-0136124_9	UniRef90	UniRef90_UPI0009B98E42	holin	NA
UHGV-0136124_9	eggNOG-mapper	476272.RUMHYD_01759	Putative lactococcus lactis phage r1t holin	NA
UHGV-0136124_9	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0136124_9	Structural annotation	PF16945	NA	NA
UHGV-0136124_10	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-0136124_11	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0136124_11	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0136124_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136124_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0136124_11	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0136124_12	AcrCatalog	cluster_11486	NA	NA
UHGV-0136124_13	PHROG	phrog_21825	endolysin	lysis
UHGV-0136124_13	UniRef90	UniRef90_G4KPH5	Putative lysozyme	NA
UHGV-0136124_13	eggNOG-mapper	693746.OBV_22650	CHAP domain	NA
UHGV-0136124_13	Pfam	PF05257	CHAP domain	CHAP
UHGV-0136124_13	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0136124_13	Structural annotation	PF00877, TIGR02594, COG0791	NA	NA
UHGV-0136124_14	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0136124_14	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0136124_17	PHROG	phrog_16490	NA	unknown function
UHGV-0136124_17	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0136124_18	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0136124_19	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0136124_20	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0136124_21	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0136124_21	PHROG	phrog_95	integrase	integration and excision
UHGV-0136124_21	UniRef90	UniRef90_A0A810Q5V8	Integrase	NA
UHGV-0136124_21	eggNOG-mapper	525254.HMPREF0072_1329	Resolvase, N terminal domain	NA
UHGV-0136124_21	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0136124_21	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0136124_21	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0136124_21	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0136124_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136124_22	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0136124_22	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0136124_23	eggNOG-mapper	218140.BPSY_1280	NA	NA
UHGV-0136124_23	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0136124_24	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0136124_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0136124_24	UniRef90	UniRef90_A0A212J3J9	HTH cro/C1-type domain-containing protein	NA
UHGV-0136124_24	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0136124_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0136124_24	Structural annotation	PF01381, MF_00535, NF007257, COG3655	NA	NA
UHGV-0136124_25	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0136124_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0136124_25	UniRef90	UniRef90_UPI0009FAA490	helix-turn-helix domain-containing protein	NA
UHGV-0136124_25	eggNOG-mapper	1123302.KB904156_gene1485	Helix-turn-helix XRE-family like proteins	NA
UHGV-0136124_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136124_25	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0136124_25	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0136124_28	PHROG	phrog_22529	NA	unknown function
UHGV-0136124_28	UniRef90	UniRef90_A0A7T7IG06	3D domain-containing protein	NA
UHGV-0136124_28	eggNOG-mapper	1007096.BAGW01000031_gene115	3D domain	NA
UHGV-0136124_28	Pfam	PF06725	3D domain	3D
UHGV-0136124_28	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0136124_30	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0136124_30	UniRef90	UniRef90_A0A8J6JIF1	AAA family ATPase	NA
UHGV-0136124_30	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0136124_30	Pfam	PF13479	AAA domain	AAA_24
UHGV-0136124_30	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0136124_31	PHROG	phrog_18107	NA	unknown function
UHGV-0136124_31	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0136124_31	Structural annotation	PF05037	NA	NA
UHGV-0136124_32	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0136124_32	UniRef90	UniRef90_A0A1C5W9A3	ERCC4 domain-containing protein	NA
UHGV-0136124_32	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0136124_32	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0136124_32	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0136124_32	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0136124_33	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0136124_33	PHROG	phrog_11992	NA	unknown function
UHGV-0136124_33	UniRef90	UniRef90_A0A810QG37	ZnF_CHCC domain-containing protein	NA
UHGV-0136124_33	eggNOG-mapper	742738.HMPREF9460_02494	CHC2 zinc finger	NA
UHGV-0136124_33	PADLOC	drt-cluster192	DRT	DRT
UHGV-0136124_33	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0136124_33	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0136124_33	Structural annotation	PF01807	NA	NA
UHGV-0136124_34	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0136124_34	UniRef90	UniRef90_UPI000C07D7A2	NA	NA
UHGV-0136124_34	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0136124_34	Pfam	PF06048	NA	DUF927
UHGV-0136124_34	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0136124_34	COG	COG5519	NA	NA
UHGV-0136124_34	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0136124_37	PHROG	phrog_25732	NA	unknown function
UHGV-0136124_37	Structural annotation	PF06257, NF011232	NA	NA
UHGV-0136124_39	UniRef90	UniRef90_A0A1C6CZV1	Transcriptional regulator, y4mF family	NA
UHGV-0136124_39	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0136124_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0136124_43	PHROG	phrog_22543	NA	unknown function
UHGV-0136124_43	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0136124_45	PHROG	phrog_18716	NA	unknown function
UHGV-0136124_45	UniRef90	UniRef90_UPI00164E701E	NA	NA
UHGV-0136124_45	eggNOG-mapper	575540.Isop_2447	NA	NA
UHGV-0136124_45	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0136124_45	Structural annotation	PF18909	NA	NA
UHGV-0136124_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0136124_46	UniRef90	UniRef90_U2SK55	DNA-binding helix-turn-helix protein	NA
UHGV-0136124_46	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0136124_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136124_46	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0136124_47	UniRef90	UniRef90_A0A1Y3R5J8	RHH_1 domain-containing protein	NA
UHGV-0136124_47	eggNOG-mapper	1160721.RBI_I00206	NA	NA
UHGV-0136124_47	Structural annotation	PF10723	NA	NA
UHGV-0136124_50	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0136124_50	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0136124_50	UniRef90	UniRef90_UPI001782D995	DNA modification methylase	NA
UHGV-0136124_50	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0136124_50	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0136124_50	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0136124_50	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0136124_50	COG	COG0863	DNA modification methylase	NA
UHGV-0136124_50	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0136124_51	eggNOG-mapper	1121428.DESHY_10054___1	NA	NA
UHGV-0136124_53	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0136124_53	PHROG	phrog_10250	NA	unknown function
UHGV-0136124_53	UniRef90	UniRef90_A0A3D3Y0N9	PBSX family phage terminase large subunit	NA
UHGV-0136124_53	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0136124_53	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0136124_53	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0136124_53	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0136124_53	COG	COG1783	Phage terminase large subunit	NA
UHGV-0136124_53	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0136124_54	PHROG	phrog_64	portal protein	head and packaging
UHGV-0136124_54	UniRef90	UniRef90_A0A285PU84	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0136124_54	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0136124_54	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0136124_54	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0136124_55	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0136124_55	UniRef90	UniRef90_A0A3D3Y165	Phage_Mu_F domain-containing protein	NA
UHGV-0136124_55	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0136124_55	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0136124_55	COG	COG2369	NA	NA
UHGV-0136124_55	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0136124_56	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0136124_56	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0136124_56	eggNOG-mapper	254253.R9QNC6_9CAUD	exonuclease activity	NA
UHGV-0136124_56	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0136124_56	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0136124_57	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0136124_57	UniRef90	UniRef90_Q4ZBR0	ORF019	NA
UHGV-0136124_57	eggNOG-mapper	673376.F2VHW3_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0136124_58	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0136124_58	Structural annotation	PF06810	NA	NA
UHGV-0136124_59	PHROG	phrog_544	major head protein	head and packaging
UHGV-0136124_59	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0136124_59	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0136124_59	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0136124_61	PHROG	phrog_17977	NA	unknown function
UHGV-0136124_61	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0136124_61	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0136124_62	PHROG	phrog_17405	head protein	head and packaging
UHGV-0136124_62	UniRef90	UniRef90_A0A415JI88	NA	NA
UHGV-0136124_62	Structural annotation	PF11367	NA	NA
UHGV-0136124_63	PHROG	phrog_885	major tail protein	tail
UHGV-0136124_63	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0136124_63	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0136124_63	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0136124_64	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0136124_66	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0136124_66	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0136124_66	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0136124_66	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0136124_66	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0136124_67	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0136124_67	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0136124_68	PHROG	phrog_13879	NA	unknown function
UHGV-0136124_68	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0136124_68	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0136124_69	PHROG	phrog_19695	NA	unknown function
UHGV-0136124_69	COG	COG0406	Broad specificity phosphatase PhoE	NA
UHGV-0136124_69	Structural annotation	PF10651	NA	NA
UHGV-0136124_70	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0136124_72	PHROG	phrog_937	hemolysin	other
UHGV-0136124_72	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0136124_73	eggNOG-mapper	693746.OBV_19010	NA	NA