UHGV-0136132

Genome information

Genome length 39,676 bps

CDS count 71

Completeness 59.81% (medium-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136132
vOTU ID	vOTU-017216
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_389783
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	59.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	79.16
Jumbo phage	No

Genome content
Genome length	39,676 bps
GC content	29.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	90.07%
Average CDS length	504.68 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136132_4	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0136132_4	PHROG	phrog_1493	endolysin	lysis
UHGV-0136132_4	UniRef90	UniRef90_K1TXM5	N-acetylmuramoyl-L-alanine amidase (Fragment)	NA
UHGV-0136132_4	eggNOG-mapper	1280698.AUJS01000007_gene1059	Ami_2	NA
UHGV-0136132_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0136132_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0136132_4	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0136132_4	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0136132_5	PHROG	phrog_1129	holin	lysis
UHGV-0136132_5	UniRef90	UniRef90_A0A1Q6M1T2	Holin	NA
UHGV-0136132_5	eggNOG-mapper	1391647.AVSV01000036_gene884	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0136132_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0136132_5	Structural annotation	PF06946	NA	NA
UHGV-0136132_6	PHROG	phrog_937	hemolysin	other
UHGV-0136132_6	eggNOG-mapper	1235793.C809_03303	NA	NA
UHGV-0136132_9	COG	COG4675	Phage tail collar domain	NA
UHGV-0136132_10	UniRef90	UniRef90_A0A1Q6M1V5	Fibronectin type-III domain-containing protein	NA
UHGV-0136132_10	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA
UHGV-0136132_11	PHROG	phrog_1220	head protein	head and packaging
UHGV-0136132_11	UniRef90	UniRef90_A0A0E0TFT0	Phage-related putative tail protein	NA
UHGV-0136132_11	eggNOG-mapper	1121324.CLIT_8c00660	NA	NA
UHGV-0136132_12	PHROG	phrog_538	minor tail protein	tail
UHGV-0136132_12	UniRef90	UniRef90_UPI0006847BDA	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0136132_12	eggNOG-mapper	1234664.AMRO01000024_gene1822	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0136132_12	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0136132_12	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0136132_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0136132_13	UniRef90	UniRef90_UPI001784C83A	phage tail family protein	NA
UHGV-0136132_13	eggNOG-mapper	1337877.R9W0N0_9CAUD	Phage tail protein	NA
UHGV-0136132_13	Structural annotation	PF05709, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0136132_15	PHROG	phrog_7078	NA	unknown function
UHGV-0136132_15	UniRef90	UniRef90_A0A7G3E3I8	Phage tail tape measure protein	NA
UHGV-0136132_15	eggNOG-mapper	743719.PaelaDRAFT_5670	phage tail tape measure protein	NA
UHGV-0136132_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0136132_16	Structural annotation	PF02136, TIGR02246, COG4319	NA	NA
UHGV-0136132_18	PHROG	phrog_88	major tail protein	tail
UHGV-0136132_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0136132_18	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0136132_19	PHROG	phrog_78	tail terminator	connector
UHGV-0136132_19	UniRef90	UniRef90_A0A7W2AJJ9	NA	NA
UHGV-0136132_19	eggNOG-mapper	1329516.JPST01000016_gene402	NA	NA
UHGV-0136132_19	Structural annotation	PF05657	NA	NA
UHGV-0136132_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0136132_20	UniRef90	UniRef90_A0A4R7KUL9	HK97 gp10 family phage protein	NA
UHGV-0136132_20	eggNOG-mapper	1280692.AUJL01000025_gene2076	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0136132_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0136132_20	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0136132_20	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0136132_22	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0136132_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0136132_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0136132_24	PHROG	phrog_283	major head protein	head and packaging
UHGV-0136132_24	UniRef90	UniRef90_UPI000DE2D5A5	P22 coat protein	NA
UHGV-0136132_24	eggNOG-mapper	1499683.CCFF01000014_gene3908	P22 coat protein - gene protein 5	NA
UHGV-0136132_24	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0136132_24	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0136132_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0136132_25	UniRef90	UniRef90_A0A0L0W6M6	Phage minor structural protein GP20	NA
UHGV-0136132_25	eggNOG-mapper	1209989.TepiRe1_1150	Phage minor structural protein GP20	NA
UHGV-0136132_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0136132_25	Structural annotation	PF06810	NA	NA
UHGV-0136132_26	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-0136132_26	eggNOG-mapper	1123489.AUAN01000010_gene361	NA	NA
UHGV-0136132_26	Structural annotation	PF20111	NA	NA
UHGV-0136132_27	eggNOG-mapper	445974.CLORAM_02934	Phage Mu protein F like protein	NA
UHGV-0136132_27	COG	COG2369	NA	NA
UHGV-0136132_28	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0136132_28	UniRef90	UniRef90_A0A371P081	Phage head morphogenesis protein	NA
UHGV-0136132_28	eggNOG-mapper	1294142.CINTURNW_1685	Phage Mu protein F like protein	NA
UHGV-0136132_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0136132_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0136132_28	COG	COG2369	NA	NA
UHGV-0136132_28	Structural annotation	TIGR01641	NA	NA
UHGV-0136132_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0136132_29	UniRef90	UniRef90_A0A5C0SEG2	Phage portal protein	NA
UHGV-0136132_29	eggNOG-mapper	97138.C820_00238	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0136132_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0136132_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0136132_30	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0136132_30	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0136132_30	UniRef90	UniRef90_A0A0D1XVP2	Phage terminase large subunit	NA
UHGV-0136132_30	eggNOG-mapper	649747.HMPREF0083_05319	Terminase RNAseH like domain	NA
UHGV-0136132_30	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0136132_30	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0136132_30	COG	COG1783	Phage terminase large subunit	NA
UHGV-0136132_30	Structural annotation	PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0136132_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0136132_31	PHROG	phrog_8711	terminase large subunit	head and packaging
UHGV-0136132_31	UniRef90	UniRef90_A0A7G9B1K2	Terminase_3 domain-containing protein	NA
UHGV-0136132_31	eggNOG-mapper	696281.Desru_1088	Phage terminase large subunit	NA
UHGV-0136132_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0136132_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0136132_31	Structural annotation	PF04466	NA	NA
UHGV-0136132_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0136132_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0136132_32	UniRef90	UniRef90_R7ITW3	Phage terminase small subunit	NA
UHGV-0136132_32	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0136132_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0136132_32	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0136132_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0136132_33	PHROG	phrog_1233	NA	unknown function
UHGV-0136132_33	UniRef90	UniRef90_R7IWF8	Peptidase_M78 domain-containing protein	NA
UHGV-0136132_33	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0136132_33	Structural annotation	PF13058	NA	NA
UHGV-0136132_35	PHROG	phrog_918	NA	unknown function
UHGV-0136132_35	UniRef90	UniRef90_UPI000F4ECE86	NA	NA
UHGV-0136132_35	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0136132_35	Pfam	PF19791	NA	DUF6275
UHGV-0136132_35	Structural annotation	PF19791	NA	NA
UHGV-0136132_37	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0136132_45	PHROG	phrog_23490	NA	unknown function
UHGV-0136132_48	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0136132_48	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0136132_48	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0136132_48	eggNOG-mapper	428125.CLOLEP_01819	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0136132_48	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0136132_48	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0136132_48	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0136132_49	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0136132_49	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0136132_49	UniRef90	UniRef90_A0A1Q6TZF2	Methyltransferase	NA
UHGV-0136132_49	eggNOG-mapper	469596.HMPREF9488_00879	DNA methylase	NA
UHGV-0136132_49	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0136132_49	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0136132_49	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0136132_49	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0136132_51	PHROG	phrog_1123	NA	unknown function
UHGV-0136132_51	UniRef90	UniRef90_A0A7U3NJT7	Putative transcriptional regulator	NA
UHGV-0136132_51	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-0136132_51	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-0136132_53	UniRef90	UniRef90_G3MAW6	Gp586	NA
UHGV-0136132_54	PHROG	phrog_13246	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0136132_54	UniRef90	UniRef90_UPI001DCA8760	NA	NA
UHGV-0136132_54	eggNOG-mapper	720554.Clocl_0687	HNH endonuclease	NA
UHGV-0136132_54	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0136132_54	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0136132_55	PHROG	phrog_7566	NA	unknown function
UHGV-0136132_55	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0136132_56	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0136132_56	eggNOG-mapper	718252.FP2_01040	NA	NA
UHGV-0136132_56	Pfam	PF05772	NinB protein	NinB
UHGV-0136132_56	Structural annotation	NF007281	NA	NA
UHGV-0136132_57	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0136132_57	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0136132_57	UniRef90	UniRef90_R6YHT0	Single-stranded DNA-binding protein	NA
UHGV-0136132_57	eggNOG-mapper	203119.Cthe_2186	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0136132_57	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0136132_57	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0136132_57	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0136132_57	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0136132_57	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0136132_58	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0136132_58	UniRef90	UniRef90_A0A3D1PJF8	Single-stranded DNA-binding protein	NA
UHGV-0136132_58	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0136132_58	Pfam	PF04404	ERF superfamily	ERF
UHGV-0136132_58	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0136132_58	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0136132_59	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0136132_59	UniRef90	UniRef90_UPI000368F966	siphovirus Gp157 family protein	NA
UHGV-0136132_59	eggNOG-mapper	1296659.S5M9S4_9CAUD	Siphovirus Gp157	NA
UHGV-0136132_59	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0136132_59	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0136132_66	UniRef90	UniRef90_UPI0012B5CFF9	NA	NA
UHGV-0136132_66	eggNOG-mapper	646413.C5IUM3_9CAUD	NA	NA
UHGV-0136132_66	Pfam	PF05339	NA	DUF739
UHGV-0136132_66	Structural annotation	PF05339, MF_00535, NF002773, COG3655	NA	NA
UHGV-0136132_67	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0136132_67	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0136132_67	UniRef90	UniRef90_R7F6V6	LexA repressor	NA
UHGV-0136132_67	eggNOG-mapper	1203606.HMPREF1526_00998	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0136132_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136132_67	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0136132_67	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0136132_67	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0136132_69	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0136132_69	PHROG	phrog_95	integrase	integration and excision
UHGV-0136132_69	UniRef90	UniRef90_UPI00038C706F	recombinase family protein	NA
UHGV-0136132_69	eggNOG-mapper	1151292.QEW_0309	Resolvase, N terminal domain	NA
UHGV-0136132_69	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0136132_69	Pfam	PF07508	Recombinase	Recombinase
UHGV-0136132_69	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0136132_69	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0136132_69	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0136132_70	eggNOG-mapper	545697.HMPREF0216_02902	NA	NA