UHGV-0136248

Genome information

Genome length 38,588 bps

CDS count 44

Completeness 94.67% (high-quality)

geNomad score 0.9754

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136248
vOTU ID	vOTU-059528
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_383998
BioSample	SAMN04209230
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.67% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9754
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.86
Jumbo phage	No

Genome content
Genome length	38,588 bps
GC content	46.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	94.92%
Average CDS length	834.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136248_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0136248_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0136248_1	UniRef90	UniRef90_A0A1Q6R550	HTH cro/C1-type domain-containing protein	NA
UHGV-0136248_1	eggNOG-mapper	935948.KE386495_gene1358	Helix-turn-helix XRE-family like proteins	NA
UHGV-0136248_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136248_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0136248_1	Structural annotation	PF01381, MF_02017, NF041951, COG1476	NA	NA
UHGV-0136248_3	Structural annotation	PF16747	NA	NA
UHGV-0136248_4	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0136248_4	PHROG	phrog_95	integrase	integration and excision
UHGV-0136248_4	UniRef90	UniRef90_E8LBZ4	Resolvase, N-terminal domain protein	NA
UHGV-0136248_4	eggNOG-mapper	626939.HMPREF9443_00357	overlaps another CDS with the same product name	NA
UHGV-0136248_4	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0136248_4	Pfam	PF07508	Recombinase	Recombinase
UHGV-0136248_4	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0136248_4	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0136248_6	PHROG	phrog_26249	NA	unknown function
UHGV-0136248_6	UniRef90	UniRef90_UPI001D017339	chitosanase	NA
UHGV-0136248_6	eggNOG-mapper	936573.HMPREF1147_2076	protein secretion by the type VII secretion system	NA
UHGV-0136248_6	Pfam	PF21277	Type VI secretion system spike protein VgrG3-like, C-terminal	T6SS_VgrG3-like_C
UHGV-0136248_6	COG	COG4842	Secreted virulence factor YukE/EsxA, WXG100 family	NA
UHGV-0136248_6	Structural annotation	PF21277	NA	NA
UHGV-0136248_7	PHROG	phrog_918	NA	unknown function
UHGV-0136248_7	UniRef90	UniRef90_UPI000EC62F11	NA	NA
UHGV-0136248_7	eggNOG-mapper	411902.CLOBOL_05677	NA	NA
UHGV-0136248_7	Pfam	PF19791	NA	DUF6275
UHGV-0136248_7	Structural annotation	PF19791	NA	NA
UHGV-0136248_8	PHROG	phrog_872	NA	unknown function
UHGV-0136248_8	UniRef90	UniRef90_UPI0014125E01	NA	NA
UHGV-0136248_8	eggNOG-mapper	1519439.JPJG01000060_gene1880	NA	NA
UHGV-0136248_8	Pfam	PF11195	NA	DUF2829
UHGV-0136248_8	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0136248_8	Structural annotation	PF11195	NA	NA
UHGV-0136248_10	PHROG	phrog_4105	NA	unknown function
UHGV-0136248_10	eggNOG-mapper	537013.CLOSTMETH_01753	NA	NA
UHGV-0136248_11	PHROG	phrog_2837	tail protein	tail
UHGV-0136248_11	UniRef90	UniRef90_A0A1Q6R2G9	NA	NA
UHGV-0136248_11	eggNOG-mapper	1286631.X805_38770	NA	NA
UHGV-0136248_11	Pfam	PF14301	NA	DUF4376
UHGV-0136248_11	Structural annotation	PF14301, COG1382	NA	NA
UHGV-0136248_12	Structural annotation	PF08948	NA	NA
UHGV-0136248_13	PHROG	phrog_1640	tail protein	tail
UHGV-0136248_13	eggNOG-mapper	1307759.JOMJ01000003_gene33	F5/8 type C domain	NA
UHGV-0136248_13	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0136248_13	Structural annotation	PF03906	NA	NA
UHGV-0136248_14	PHROG	phrog_9880	NA	unknown function
UHGV-0136248_14	eggNOG-mapper	568816.Acin_1824	NA	NA
UHGV-0136248_14	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-0136248_15	UniRef90	UniRef90_A0A1B3X2T2	NlpC/P60 domain-containing protein	NA
UHGV-0136248_15	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0136248_16	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0136248_16	Structural annotation	TIGR02971	NA	NA
UHGV-0136248_17	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0136248_17	UniRef90	UniRef90_A0A3A5L1J5	NA	NA
UHGV-0136248_17	eggNOG-mapper	585503.HMPREF7545_1741	NA	NA
UHGV-0136248_17	Structural annotation	PF11039, MF_02210, NF011709, COG1247	NA	NA
UHGV-0136248_18	PHROG	phrog_376	tail protein	tail
UHGV-0136248_18	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0136248_18	eggNOG-mapper	585503.HMPREF7545_1740	NA	NA
UHGV-0136248_18	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0136248_19	PHROG	phrog_394	tail protein	tail
UHGV-0136248_19	UniRef90	UniRef90_A0A8B2QU77	Tail tube protein	NA
UHGV-0136248_19	eggNOG-mapper	585503.HMPREF7545_1739	NA	NA
UHGV-0136248_19	Structural annotation	PF17212	NA	NA
UHGV-0136248_20	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0136248_20	Structural annotation	PF12949	NA	NA
UHGV-0136248_21	PHROG	phrog_427	NA	unknown function
UHGV-0136248_21	eggNOG-mapper	585503.HMPREF7545_1737	NA	NA
UHGV-0136248_21	Structural annotation	PF21190, NF033675	NA	NA
UHGV-0136248_22	PHROG	phrog_212	major head protein	head and packaging
UHGV-0136248_22	UniRef90	UniRef90_A0A0U1KVA9	NA	NA
UHGV-0136248_22	eggNOG-mapper	585503.HMPREF7545_1736	NA	NA
UHGV-0136248_22	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0136248_22	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0136248_23	PHROG	phrog_458	protease	other
UHGV-0136248_23	UniRef90	UniRef90_A0A6J5NV41	Putative protease	NA
UHGV-0136248_23	eggNOG-mapper	585503.HMPREF7545_1735	NA	NA
UHGV-0136248_25	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0136248_25	UniRef90	UniRef90_A0A8B2QMC7	Head-to-tail connecting protein	NA
UHGV-0136248_25	eggNOG-mapper	585503.HMPREF7545_1733	Bacteriophage head to tail connecting protein	NA
UHGV-0136248_25	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0136248_25	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0136248_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0136248_27	PHROG	phrog_5902	NA	unknown function
UHGV-0136248_27	UniRef90	UniRef90_UPI0018C4A0E6	terminase	NA
UHGV-0136248_27	eggNOG-mapper	1200557.JHWV01000001_gene277	Terminase RNaseH-like domain	NA
UHGV-0136248_27	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0136248_27	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0136248_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0136248_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0136248_28	UniRef90	UniRef90_A0A8B2QP55	Phage terminase small subunit	NA
UHGV-0136248_28	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0136248_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0136248_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0136248_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0136248_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0136248_30	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0136248_30	Structural annotation	PF21578	NA	NA
UHGV-0136248_32	PHROG	phrog_1672	NA	unknown function
UHGV-0136248_32	eggNOG-mapper	1443122.Z958_05925	NA	NA
UHGV-0136248_34	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0136248_34	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0136248_34	UniRef90	UniRef90_A0A1Y4WCX6	ParB domain-containing protein	NA
UHGV-0136248_34	eggNOG-mapper	1408437.JNJN01000030_gene1074	Belongs to the ParB family	NA
UHGV-0136248_34	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0136248_34	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0136248_34	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0136248_34	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0136248_37	Pfam	PF12957	NA	DUF3846
UHGV-0136248_37	Structural annotation	PF12957	NA	NA
UHGV-0136248_42	Structural annotation	PF13033	NA	NA
UHGV-0136248_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0136248_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0136248_44	UniRef90	UniRef90_R6X1Y8	Helix-turn-helix domain protein	NA
UHGV-0136248_44	eggNOG-mapper	411470.RUMGNA_02181	DNA-binding helix-turn-helix protein	NA
UHGV-0136248_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136248_44	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0136248_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA