UHGV-0136252

Genome information

Genome length 47,161 bps

CDS count 79

Completeness 99.90% (high-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136252
vOTU ID	vOTU-064589
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_383994
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.37
Jumbo phage	No

Genome content
Genome length	47,161 bps
GC content	52.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	79
CDS density	91.01%
Average CDS length	548.24 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136252_3	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0136252_3	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0136252_3	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-0136252_3	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0136252_3	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0136252_3	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0136252_3	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0136252_3	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0136252_3	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0136252_4	PHROG	phrog_3136	NA	unknown function
UHGV-0136252_4	UniRef90	UniRef90_UPI001C00EDA4	ASCH domain-containing protein	NA
UHGV-0136252_4	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0136252_4	Pfam	PF04266	ASCH domain	ASCH
UHGV-0136252_4	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0136252_4	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0136252_5	PHROG	phrog_38832	NA	unknown function
UHGV-0136252_5	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0136252_5	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0136252_6	PHROG	phrog_31029	NA	unknown function
UHGV-0136252_9	UniRef90	UniRef90_UPI001C10265C	NA	NA
UHGV-0136252_9	Pfam	PF04448	NA	DUF551
UHGV-0136252_9	Structural annotation	NF041588	NA	NA
UHGV-0136252_11	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0136252_11	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0136252_11	UniRef90	UniRef90_A0A2U1CFM2	Methyltransferase	NA
UHGV-0136252_11	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0136252_11	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0136252_11	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0136252_11	COG	COG0863	DNA modification methylase	NA
UHGV-0136252_11	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0136252_12	PHROG	phrog_31336	NA	unknown function
UHGV-0136252_12	UniRef90	UniRef90_A0A5C7LKL9	NA	NA
UHGV-0136252_12	eggNOG-mapper	1357732.A0A059PYA6_9CAUD	NA	NA
UHGV-0136252_12	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0136252_12	Structural annotation	PF18909	NA	NA
UHGV-0136252_13	UniRef90	UniRef90_UPI001A9B9FB4	FAD-dependent thymidylate synthase	NA
UHGV-0136252_13	eggNOG-mapper	1410632.JHWW01000006_gene695	NA	NA
UHGV-0136252_13	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0136252_13	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0136252_14	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0136252_14	UniRef90	UniRef90_C9KJA8	dUTP diphosphatase	NA
UHGV-0136252_14	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0136252_14	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0136252_15	Structural annotation	PF10013	NA	NA
UHGV-0136252_16	UniRef90	UniRef90_K1SN71	HTH_30 domain-containing protein	NA
UHGV-0136252_16	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-0136252_17	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0136252_18	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0136252_18	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0136252_18	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0136252_20	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0136252_20	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0136252_20	UniRef90	UniRef90_A0A3D3Y6X7	FtsK domain-containing protein	NA
UHGV-0136252_20	eggNOG-mapper	1121445.ATUZ01000013_gene1292	PFAM cell divisionFtsK SpoIIIE	NA
UHGV-0136252_20	PADLOC	SspH_00004	SspH	SSP
UHGV-0136252_20	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0136252_20	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0136252_20	Structural annotation	PF01580, MF_00350, TIGR03925, COG4128	NA	NA
UHGV-0136252_22	eggNOG-mapper	1232436.CAPF01000086_gene855	NA	NA
UHGV-0136252_24	Structural annotation	PF10723	NA	NA
UHGV-0136252_25	UniRef90	UniRef90_A0A318EMC2	DNA-packaging protein gp3	NA
UHGV-0136252_25	eggNOG-mapper	877421.AUJT01000054_gene66	NA	NA
UHGV-0136252_25	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0136252_26	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0136252_26	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0136252_26	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0136252_26	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0136252_26	COG	COG5410	NA	NA
UHGV-0136252_26	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0136252_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0136252_28	UniRef90	UniRef90_A0A3D3Y472	Phage portal protein	NA
UHGV-0136252_28	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0136252_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0136252_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0136252_29	PHROG	phrog_6577	NA	unknown function
UHGV-0136252_29	UniRef90	UniRef90_A0A3D3Y4T2	Phage_Mu_F domain-containing protein	NA
UHGV-0136252_29	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0136252_29	COG	COG2369	NA	NA
UHGV-0136252_29	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0136252_32	PHROG	phrog_544	major head protein	head and packaging
UHGV-0136252_32	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0136252_32	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0136252_33	UniRef90	UniRef90_A0A1V5X694	Phage gp6-like head-tail connector protein	NA
UHGV-0136252_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0136252_33	Structural annotation	TIGR01560	NA	NA
UHGV-0136252_34	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0136252_35	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0136252_36	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0136252_37	eggNOG-mapper	1298920.KI911353_gene2652	NA	NA
UHGV-0136252_37	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0136252_38	UniRef90	UniRef90_UPI001D0975F6	NA	NA
UHGV-0136252_39	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0136252_40	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0136252_40	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-0136252_40	eggNOG-mapper	1123263.AUKY01000015_gene1620	Phage tail tape measure protein TP901	NA
UHGV-0136252_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0136252_41	PHROG	phrog_1194	NA	unknown function
UHGV-0136252_41	eggNOG-mapper	1121333.JMLH01000047_gene1008	NA	NA
UHGV-0136252_41	Pfam	PF20458	NA	DUF6711
UHGV-0136252_41	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0136252_42	PHROG	phrog_32308	NA	unknown function
UHGV-0136252_42	eggNOG-mapper	1122918.KB907248_gene4487	NA	NA
UHGV-0136252_42	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0136252_46	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0136252_46	PHROG	phrog_819	tail protein	tail
UHGV-0136252_46	UniRef90	UniRef90_UPI00068BE71D	collagen-like protein	NA
UHGV-0136252_46	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0136252_46	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0136252_46	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0136252_46	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0136252_47	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0136252_47	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0136252_47	UniRef90	UniRef90_A0A1I1Z9R5	Calcineurin-like phosphoesterase	NA
UHGV-0136252_47	eggNOG-mapper	485916.Dtox_1961	PFAM Bacterial Ig-like domain (group 2)	NA
UHGV-0136252_47	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0136252_47	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0136252_47	Structural annotation	PF02368, PF09423, MF_00575, NF003743, NF005261, COG5492	NA	NA
UHGV-0136252_48	PHROG	phrog_937	hemolysin	other
UHGV-0136252_48	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0136252_50	PHROG	phrog_13256	NA	unknown function
UHGV-0136252_50	eggNOG-mapper	428125.CLOLEP_01907	NA	NA
UHGV-0136252_51	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0136252_51	PHROG	phrog_1794	amidase	lysis
UHGV-0136252_51	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0136252_51	eggNOG-mapper	411470.RUMGNA_02087	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0136252_51	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0136252_51	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0136252_51	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0136252_52	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-0136252_52	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0136252_52	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0136252_52	Structural annotation	PF04545, MF_00245, TIGR02985, COG2739	NA	NA
UHGV-0136252_54	Structural annotation	PF18812, COG2929	NA	NA
UHGV-0136252_55	PHROG	phrog_36767	NA	unknown function
UHGV-0136252_55	UniRef90	UniRef90_UPI00067E7E25	NA	NA
UHGV-0136252_58	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0136252_58	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0136252_59	KOfam	K14059	int; integrase	NA
UHGV-0136252_59	PHROG	phrog_1	integrase	integration and excision
UHGV-0136252_59	UniRef90	UniRef90_A0A810Q0Y2	Tyr recombinase domain-containing protein	NA
UHGV-0136252_59	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0136252_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0136252_59	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0136252_59	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0136252_60	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0136252_61	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0136252_61	PHROG	phrog_19856	NA	unknown function
UHGV-0136252_61	UniRef90	UniRef90_S0JAU4	Mrr_cat domain-containing protein	NA
UHGV-0136252_61	eggNOG-mapper	689781.AUJX01000015_gene1540	restriction endonuclease	NA
UHGV-0136252_61	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0136252_61	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0136252_61	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0136252_61	Structural annotation	PF04471, PF09397, NF003162, COG1787	NA	NA
UHGV-0136252_62	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0136252_62	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0136252_63	PHROG	phrog_4433	NA	unknown function
UHGV-0136252_63	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0136252_63	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0136252_66	PHROG	phrog_14970	NA	unknown function
UHGV-0136252_66	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0136252_66	eggNOG-mapper	397291.C804_03856	double-strand break repair protein	NA
UHGV-0136252_66	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0136252_66	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0136252_67	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0136252_67	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0136252_67	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0136252_67	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0136252_68	UniRef90	UniRef90_A0A3D1LDS4	HNH domain-containing protein	NA
UHGV-0136252_68	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0136252_68	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0136252_69	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0136252_69	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0136252_69	UniRef90	UniRef90_R6LLA3	Single-stranded DNA-binding protein	NA
UHGV-0136252_69	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0136252_69	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0136252_69	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0136252_69	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0136252_69	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0136252_69	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0136252_70	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0136252_70	UniRef90	UniRef90_R6LWZ9	DnaD and phage-associated domain	NA
UHGV-0136252_70	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0136252_70	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0136252_72	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0136252_72	Structural annotation	PF09035, NF040990	NA	NA
UHGV-0136252_75	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0136252_75	UniRef90	UniRef90_A0A841L4D7	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	NA
UHGV-0136252_75	eggNOG-mapper	742738.HMPREF9460_03770	radical SAM domain protein	NA
UHGV-0136252_75	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0136252_75	Structural annotation	PF04055, MF_01864, TIGR04072, COG0621	NA	NA
UHGV-0136252_76	Pfam	PF04448	NA	DUF551
UHGV-0136252_76	Structural annotation	NF041588	NA	NA
UHGV-0136252_77	PHROG	phrog_3136	NA	unknown function
UHGV-0136252_77	UniRef90	UniRef90_A0A329TS47	ASCH domain-containing protein	NA
UHGV-0136252_77	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0136252_77	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0136252_79	PHROG	phrog_38832	NA	unknown function
UHGV-0136252_79	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA