UHGV-0136304

Genome information

Genome length 30,113 bps

CDS count 52

Completeness 100.00% (complete)

geNomad score 0.9661

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136304
vOTU ID	vOTU-045989
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_388771
BioSample	SAMN04329773
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9661
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.09
Jumbo phage	No

Genome content
Genome length	30,113 bps
GC content	38.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.05%
Average CDS length	532.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136304_1	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0136304_1	UniRef90	UniRef90_A0A4R3J966	Phage minor structural protein	NA
UHGV-0136304_1	eggNOG-mapper	1235798.C817_04594	Prophage endopeptidase tail	NA
UHGV-0136304_1	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0136304_1	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0136304_1	COG	COG4926	Phage-related protein	NA
UHGV-0136304_2	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0136304_2	UniRef90	UniRef90_A0A412AXU0	Phage tail protein	NA
UHGV-0136304_2	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0136304_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0136304_2	COG	COG4722	Phage-related protein YomH	NA
UHGV-0136304_2	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0136304_3	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0136304_3	UniRef90	UniRef90_UPI000DFF7CD9	PblA	NA
UHGV-0136304_3	eggNOG-mapper	1321820.HMPREF1983_00924	Phage tail tape measure protein	NA
UHGV-0136304_3	COG	COG1511	NA	NA
UHGV-0136304_3	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0136304_4	PHROG	phrog_1633	NA	unknown function
UHGV-0136304_4	UniRef90	UniRef90_C5WGV4	NA	NA
UHGV-0136304_4	eggNOG-mapper	873448.STRPO_0293	NA	NA
UHGV-0136304_4	Pfam	PF17318	NA	DUF5361
UHGV-0136304_4	Structural annotation	PF17318	NA	NA
UHGV-0136304_5	PHROG	phrog_1526	NA	unknown function
UHGV-0136304_5	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-0136304_6	PHROG	phrog_117	major tail protein	tail
UHGV-0136304_6	UniRef90	UniRef90_A0A844E2C0	Phage tail protein	NA
UHGV-0136304_6	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-0136304_6	COG	COG5492	NA	NA
UHGV-0136304_6	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0136304_7	PHROG	phrog_123	tail terminator	connector
UHGV-0136304_7	eggNOG-mapper	1321820.HMPREF1983_00928	NA	NA
UHGV-0136304_7	Structural annotation	PF06141	NA	NA
UHGV-0136304_8	PHROG	phrog_387	neck protein	connector
UHGV-0136304_8	UniRef90	UniRef90_A0A4U9XLC1	NA	NA
UHGV-0136304_8	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-0136304_9	PHROG	phrog_501	head closure Hc1	connector
UHGV-0136304_9	UniRef90	UniRef90_R6CEU4	NA	NA
UHGV-0136304_9	eggNOG-mapper	157924.Q7Y4I1_9CAUD	NA	NA
UHGV-0136304_9	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0136304_10	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0136304_10	UniRef90	UniRef90_A0A4R6QC18	Gp19/Gp15/Gp42-like protein	NA
UHGV-0136304_10	eggNOG-mapper	1280698.AUJS01000007_gene1040	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0136304_10	Pfam	PF09355	NA	Phage_Gp19
UHGV-0136304_10	Structural annotation	PF09355	NA	NA
UHGV-0136304_12	PHROG	phrog_32396	NA	unknown function
UHGV-0136304_12	UniRef90	UniRef90_A0A1C5MLP2	Phage capsid family	NA
UHGV-0136304_12	eggNOG-mapper	665950.HMPREF1025_02530	Phage capsid family	NA
UHGV-0136304_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0136304_13	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0136304_13	UniRef90	UniRef90_UPI001961E2FD	NA	NA
UHGV-0136304_13	eggNOG-mapper	665950.HMPREF1025_02531	NA	NA
UHGV-0136304_14	PHROG	phrog_17688	NA	unknown function
UHGV-0136304_14	UniRef90	UniRef90_A0A1C5Y909	Phage terminase-like protein, large subunit	NA
UHGV-0136304_14	eggNOG-mapper	665950.HMPREF1025_02532	phage terminase, large subunit	NA
UHGV-0136304_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0136304_14	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0136304_15	PHROG	phrog_37230	NA	unknown function
UHGV-0136304_16	eggNOG-mapper	665956.HMPREF1032_03899	NA	NA
UHGV-0136304_17	PHROG	phrog_1865	NA	unknown function
UHGV-0136304_17	UniRef90	UniRef90_UPI001EFBD967	LSM domain protein	NA
UHGV-0136304_17	Structural annotation	PF07073, MF_00436, NF008636, COG4568	NA	NA
UHGV-0136304_18	PHROG	phrog_2494	minor head protein	head and packaging
UHGV-0136304_18	UniRef90	UniRef90_A0A1C5MKJ0	Ntox50 domain-containing protein	NA
UHGV-0136304_18	eggNOG-mapper	1280698.AUJS01000007_gene1034	cell adhesion	NA
UHGV-0136304_18	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0136304_18	COG	COG2369	NA	NA
UHGV-0136304_18	Structural annotation	PF15542	NA	NA
UHGV-0136304_19	PHROG	phrog_104	portal protein	head and packaging
UHGV-0136304_19	UniRef90	UniRef90_A0A1C5MKT6	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0136304_19	eggNOG-mapper	665950.HMPREF1025_02537	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0136304_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0136304_19	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0136304_20	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0136304_20	UniRef90	UniRef90_R6S8U5	HNH endonuclease	NA
UHGV-0136304_20	eggNOG-mapper	1280698.AUJS01000007_gene1032	HNH endonuclease domain protein	NA
UHGV-0136304_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0136304_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0136304_20	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0136304_21	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-0136304_21	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0136304_21	UniRef90	UniRef90_UPI001650D579	type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0136304_21	eggNOG-mapper	796945.HMPREF1145_1160	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0136304_21	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0136304_21	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0136304_21	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-0136304_21	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-0136304_22	PHROG	phrog_4085	NA	unknown function
UHGV-0136304_22	UniRef90	UniRef90_UPI00165129A5	NA	NA
UHGV-0136304_22	eggNOG-mapper	904296.HMPREF9124_0081	NA	NA
UHGV-0136304_22	Pfam	PF19807	NA	DUF6290
UHGV-0136304_22	Structural annotation	PF19807, NF041418, COG4710	NA	NA
UHGV-0136304_23	PHROG	phrog_11237	NA	unknown function
UHGV-0136304_23	eggNOG-mapper	875454.BAEW01000017_gene1604	NA	NA
UHGV-0136304_23	Structural annotation	TIGR01636	NA	NA
UHGV-0136304_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0136304_24	eggNOG-mapper	641107.CDLVIII_1314	NA	NA
UHGV-0136304_24	Structural annotation	PF21578	NA	NA
UHGV-0136304_25	UniRef90	UniRef90_A0A4Q4JFT2	PC4 domain-containing protein	NA
UHGV-0136304_25	eggNOG-mapper	1395513.P343_07265	Transcriptional Coactivator p15 (PC4)	NA
UHGV-0136304_25	COG	COG4443	NA	NA
UHGV-0136304_25	Structural annotation	COG4443	NA	NA
UHGV-0136304_26	KOfam	K06416	spoVS; stage V sporulation protein S	NA
UHGV-0136304_26	PHROG	phrog_35646	sporulation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0136304_26	UniRef90	UniRef90_A0A7C5LQB8	Stage V sporulation protein S	NA
UHGV-0136304_26	eggNOG-mapper	1385513.N780_11330	Stage V sporulation protein S	NA
UHGV-0136304_26	Pfam	PF04232	Stage V sporulation protein S (SpoVS)	SpoVS
UHGV-0136304_26	COG	COG2359	Stage V sporulation protein SpoVS, predicted DNA-binding, AlbA superfamily	NA
UHGV-0136304_26	Structural annotation	PF04232, MF_01122, NF003088, COG2359	NA	NA
UHGV-0136304_28	PHROG	phrog_14105	NA	unknown function
UHGV-0136304_28	UniRef90	UniRef90_UPI000C077CF9	PPE family protein	NA
UHGV-0136304_28	eggNOG-mapper	485918.Cpin_3860	Pentapeptide repeats (8 copies)	NA
UHGV-0136304_28	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0136304_28	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0136304_29	PHROG	phrog_25385	NA	unknown function
UHGV-0136304_29	eggNOG-mapper	748224.HMPREF9436_03077	NA	NA
UHGV-0136304_30	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0136304_30	UniRef90	UniRef90_A0A1C6JAV8	Transcriptional activator, adenine-specific DNA methyltransferase	NA
UHGV-0136304_30	eggNOG-mapper	1121423.JONT01000060_gene932	Belongs to the MT-A70-like family	NA
UHGV-0136304_30	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0136304_30	Pfam	PF05063	MT-A70	MT-A70
UHGV-0136304_30	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0136304_31	Structural annotation	PF09889, MF_00649	NA	NA
UHGV-0136304_32	PHROG	phrog_24368	NA	unknown function
UHGV-0136304_33	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0136304_33	PHROG	phrog_32437	NA	unknown function
UHGV-0136304_33	UniRef90	UniRef90_R6ETT3	Transglycosylase SLT domain protein	NA
UHGV-0136304_33	eggNOG-mapper	742741.HMPREF9475_00405	Transglycosylase SLT domain	NA
UHGV-0136304_33	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0136304_33	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0136304_33	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0136304_36	PHROG	phrog_7566	NA	unknown function
UHGV-0136304_36	eggNOG-mapper	1410650.JHWL01000003_gene2846	NA	NA
UHGV-0136304_38	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0136304_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0136304_38	UniRef90	UniRef90_A0A1G4WDY9	Helix-turn-helix	NA
UHGV-0136304_38	eggNOG-mapper	1226325.HMPREF1548_01076	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0136304_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136304_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0136304_39	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0136304_39	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0136304_39	UniRef90	UniRef90_UPI001CF91FD5	helix-turn-helix domain-containing protein	NA
UHGV-0136304_39	eggNOG-mapper	1120998.AUFC01000013_gene2938	PFAM helix-turn-helix domain protein	NA
UHGV-0136304_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136304_39	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0136304_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0136304_39	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0136304_40	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0136304_40	PHROG	phrog_8036	NA	unknown function
UHGV-0136304_40	UniRef90	UniRef90_R6DUB6	DNA-damage-inducible protein D family protein	NA
UHGV-0136304_40	eggNOG-mapper	1514668.JOOA01000001_gene65	BRO family, N-terminal domain	NA
UHGV-0136304_40	AcrCatalog	cluster_17589	NA	NA
UHGV-0136304_40	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0136304_40	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0136304_40	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0136304_40	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0136304_40	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0136304_41	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0136304_41	PHROG	phrog_95	integrase	integration and excision
UHGV-0136304_41	UniRef90	UniRef90_UPI0004162303	recombinase family protein	NA
UHGV-0136304_41	eggNOG-mapper	1120998.AUFC01000013_gene2937	NA	NA
UHGV-0136304_41	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0136304_41	Pfam	PF07508	Recombinase	Recombinase
UHGV-0136304_41	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0136304_41	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0136304_41	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0136304_42	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0136304_42	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0136304_42	UniRef90	UniRef90_A0A6N7IXX2	HigA family addiction module antidote protein	NA
UHGV-0136304_42	eggNOG-mapper	1280696.ATVY01000008_gene1953	Helix-turn-helix XRE-family like proteins	NA
UHGV-0136304_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136304_42	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0136304_42	NCBIFam	TIGR02607.1	HigA family addiction module antitoxin	NA
UHGV-0136304_42	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0136304_42	Structural annotation	PF12844, MF_00535, TIGR02607, COG3093, COG2856	NA	NA
UHGV-0136304_43	PHROG	phrog_3066	toxin of TA system	moron, auxiliary metabolic gene and host takeover
UHGV-0136304_43	UniRef90	UniRef90_A0A1V5HLW4	Plasmid maintenance system killer protein	NA
UHGV-0136304_43	eggNOG-mapper	1280696.ATVY01000008_gene1954	NA	NA
UHGV-0136304_43	Pfam	PF05015	RelE-like toxin of type II toxin-antitoxin system HigB	HigB-like_toxin
UHGV-0136304_43	Structural annotation	PF05015, TIGR00053, COG4115	NA	NA
UHGV-0136304_45	UniRef90	UniRef90_A0A6I3PLH9	Helix-turn-helix domain-containing protein	NA
UHGV-0136304_45	eggNOG-mapper	1064535.MELS_1530	sequence-specific DNA binding	NA
UHGV-0136304_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136304_45	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0136304_45	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-0136304_46	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0136304_46	PHROG	phrog_4018	amidase	lysis
UHGV-0136304_46	UniRef90	UniRef90_UPI001373CFBA	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0136304_46	eggNOG-mapper	888727.HMPREF9092_0301	repeat protein	NA
UHGV-0136304_46	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0136304_46	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0136304_46	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0136304_46	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0136304_47	UniRef90	UniRef90_UPI0009E3338B	ribbon-helix-helix domain-containing protein	NA
UHGV-0136304_47	eggNOG-mapper	1235802.C823_04889	NA	NA
UHGV-0136304_48	UniRef90	UniRef90_A0A4Q5C4H0	Protein phosphatase	NA
UHGV-0136304_48	eggNOG-mapper	411902.CLOBOL_03859	NA	NA
UHGV-0136304_48	AcrCatalog	cluster_13845	NA	NA
UHGV-0136304_50	PHROG	phrog_9233	holin	lysis
UHGV-0136304_50	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-0136304_50	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0136304_50	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0136304_50	Structural annotation	PF16938	NA	NA
UHGV-0136304_51	PHROG	phrog_19280	NA	unknown function
UHGV-0136304_51	eggNOG-mapper	537007.BLAHAN_05252	NA	NA