UHGV-0136354

Genome information

Genome length 27,802 bps

CDS count 45

Completeness 69.16% (medium-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136354
vOTU ID	vOTU-016982
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_376148
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.06
Jumbo phage	No

Genome content
Genome length	27,802 bps
GC content	30.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.03%
Average CDS length	569.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136354_3	eggNOG-mapper	1391647.AVSV01000003_gene1787	NA	NA
UHGV-0136354_4	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0136354_4	UniRef90	UniRef90_UPI001DC4B2C4	ERF family protein	NA
UHGV-0136354_4	eggNOG-mapper	931276.Cspa_c26630	ERF superfamily	NA
UHGV-0136354_4	Pfam	PF04404	ERF superfamily	ERF
UHGV-0136354_4	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0136354_5	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0136354_5	UniRef90	UniRef90_A0A7U9DAY1	DnaA_N domain-containing protein	NA
UHGV-0136354_5	eggNOG-mapper	1415775.U729_2588	DnaD domain protein	NA
UHGV-0136354_5	Pfam	PF11638	DnaA N-terminal domain	DnaA_N
UHGV-0136354_5	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0136354_5	Structural annotation	PF09681, PF17214, MF_01819, TIGR01714, COG5529	NA	NA
UHGV-0136354_6	PHROG	phrog_3497	NA	unknown function
UHGV-0136354_6	UniRef90	UniRef90_A0A3P6K8I0	NA	NA
UHGV-0136354_6	eggNOG-mapper	1196322.A370_02067	NA	NA
UHGV-0136354_6	Structural annotation	COG5126	NA	NA
UHGV-0136354_7	PHROG	phrog_25509	NA	unknown function
UHGV-0136354_7	eggNOG-mapper	1280689.AUJC01000003_gene942	NA	NA
UHGV-0136354_8	PHROG	phrog_33582	NA	unknown function
UHGV-0136354_8	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0136354_9	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0136354_9	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0136354_9	UniRef90	UniRef90_A0A7U9D4V1	PAPS_reduct domain-containing protein	NA
UHGV-0136354_9	eggNOG-mapper	1196322.A370_02048	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0136354_9	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0136354_9	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0136354_10	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0136354_10	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0136354_10	UniRef90	UniRef90_A0A7U9H121	PAPS_reduct domain-containing protein	NA
UHGV-0136354_10	eggNOG-mapper	1196322.A370_02048	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0136354_10	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0136354_10	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0136354_10	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0136354_11	PHROG	phrog_154	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0136354_11	eggNOG-mapper	1196322.A370_02042	NA	NA
UHGV-0136354_12	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0136354_12	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0136354_12	UniRef90	UniRef90_A0A6N3BHM1	Endodeoxyribonuclease RusA	NA
UHGV-0136354_12	eggNOG-mapper	1033737.CAEV01000076_gene539	Endodeoxyribonuclease RusA	NA
UHGV-0136354_12	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0136354_12	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0136354_12	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0136354_13	PHROG	phrog_30861	NA	unknown function
UHGV-0136354_13	UniRef90	UniRef90_UPI0013EE96C6	zinc ribbon domain-containing protein	NA
UHGV-0136354_14	PHROG	phrog_874	NA	unknown function
UHGV-0136354_14	UniRef90	UniRef90_A0A3P6JHM7	Upf86.8	NA
UHGV-0136354_14	eggNOG-mapper	1415774.U728_762	NA	NA
UHGV-0136354_14	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0136354_15	PHROG	phrog_1672	NA	unknown function
UHGV-0136354_15	UniRef90	UniRef90_A0A3P6KCP8	NA	NA
UHGV-0136354_15	eggNOG-mapper	632245.CLP_2710	NA	NA
UHGV-0136354_16	PHROG	phrog_3930	NA	unknown function
UHGV-0136354_17	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0136354_17	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0136354_17	UniRef90	UniRef90_M1ZYY6	Methyltransferase	NA
UHGV-0136354_17	eggNOG-mapper	1345695.CLSA_c30050	DNA methylase	NA
UHGV-0136354_17	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0136354_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0136354_17	COG	COG0863	DNA modification methylase	NA
UHGV-0136354_17	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0136354_18	PHROG	phrog_19515	NA	unknown function
UHGV-0136354_18	eggNOG-mapper	318464.IO99_13805	NA	NA
UHGV-0136354_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0136354_20	UniRef90	UniRef90_A0A7U9D6F2	Sigma70_r4 domain-containing protein	NA
UHGV-0136354_20	eggNOG-mapper	641107.CDLVIII_1330	NA	NA
UHGV-0136354_20	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0136354_20	Structural annotation	PF04545, MF_00683, NF008895	NA	NA
UHGV-0136354_21	eggNOG-mapper	1196322.A370_01153	NA	NA
UHGV-0136354_22	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0136354_22	PHROG	phrog_216	integrase	integration and excision
UHGV-0136354_22	UniRef90	UniRef90_A0A7U9D8J5	Tyr recombinase domain-containing protein	NA
UHGV-0136354_22	eggNOG-mapper	1415774.U728_1259	integrase family	NA
UHGV-0136354_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0136354_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0136354_22	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0136354_23	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0136354_23	UniRef90	UniRef90_A0A7U9CB46	DNA-binding protein	NA
UHGV-0136354_23	eggNOG-mapper	1540257.JQMW01000013_gene750	NA	NA
UHGV-0136354_23	Structural annotation	PF13022, COG3677	NA	NA
UHGV-0136354_24	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0136354_24	UniRef90	UniRef90_A0A7U9D7K4	Terminase_6C domain-containing protein	NA
UHGV-0136354_24	eggNOG-mapper	1499683.CCFF01000017_gene2143	TIGRFAM Phage	NA
UHGV-0136354_24	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0136354_24	COG	COG5362	Phage terminase large subunit	NA
UHGV-0136354_24	Structural annotation	PF17289, PF03354, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0136354_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0136354_25	UniRef90	UniRef90_UPI0018AAC53F	phage portal protein	NA
UHGV-0136354_25	eggNOG-mapper	1415774.U728_1093	portal protein, SPP1 Gp6-like	NA
UHGV-0136354_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0136354_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0136354_26	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0136354_26	UniRef90	UniRef90_A0A7U9H1P8	SPP1 gp7 family phage head morphogenesis protein	NA
UHGV-0136354_26	eggNOG-mapper	1345695.CLSA_c29950	Phage Mu protein F like protein	NA
UHGV-0136354_26	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0136354_26	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0136354_26	COG	COG2369	NA	NA
UHGV-0136354_30	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0136354_30	UniRef90	UniRef90_A0A6B4MF17	NA	NA
UHGV-0136354_30	eggNOG-mapper	1415774.U728_1666	NA	NA
UHGV-0136354_30	Pfam	PF14265	NA	DUF4355
UHGV-0136354_30	Structural annotation	PF14265	NA	NA
UHGV-0136354_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-0136354_31	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0136354_31	eggNOG-mapper	641112.ACOK01000073_gene2894	NA	NA
UHGV-0136354_31	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0136354_32	eggNOG-mapper	1415774.U728_1664	NA	NA
UHGV-0136354_33	eggNOG-mapper	931276.Cspa_c26940	NA	NA
UHGV-0136354_33	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0136354_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0136354_34	UniRef90	UniRef90_A0A6B4XUZ8	HK97 gp10 family phage protein	NA
UHGV-0136354_34	eggNOG-mapper	1345695.CLSA_c29890	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0136354_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0136354_34	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0136354_35	PHROG	phrog_525	NA	unknown function
UHGV-0136354_35	eggNOG-mapper	1415774.U728_1661	NA	NA
UHGV-0136354_35	Pfam	PF20765	NA	DUF6838
UHGV-0136354_35	Structural annotation	PF20765, NF040576, COG5003	NA	NA
UHGV-0136354_36	PHROG	phrog_1480	tail sheath	tail
UHGV-0136354_36	UniRef90	UniRef90_A0A0M0AD29	Phage tail sheath protein	NA
UHGV-0136354_36	eggNOG-mapper	632245.CLP_1279	Phage tail sheath C-terminal domain	NA
UHGV-0136354_36	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0136354_36	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0136354_36	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0136354_37	PHROG	phrog_365	tail protein	tail
UHGV-0136354_37	UniRef90	UniRef90_UPI0013F6F38F	phage tail tube protein	NA
UHGV-0136354_37	eggNOG-mapper	632245.CLP_1280	Phage tail tube protein	NA
UHGV-0136354_37	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0136354_38	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0136354_38	UniRef90	UniRef90_A0A1W7LL49	Putative Phage XkdN-like protein	NA
UHGV-0136354_38	eggNOG-mapper	632245.CLP_1281	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0136354_38	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0136354_39	PHROG	phrog_973	tail length tape measure protein	tail
UHGV-0136354_39	eggNOG-mapper	632245.CLP_1282	tape measure	NA
UHGV-0136354_39	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0136354_40	PHROG	phrog_7348	endolysin	lysis
UHGV-0136354_40	UniRef90	UniRef90_A0A7U9H1P3	LysM domain-containing protein	NA
UHGV-0136354_40	eggNOG-mapper	632245.CLP_1283	LysM domain	NA
UHGV-0136354_40	Pfam	PF01476	LysM domain	LysM
UHGV-0136354_40	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0136354_40	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0136354_41	PHROG	phrog_400	tail protein	tail
UHGV-0136354_41	UniRef90	UniRef90_A0A7U9D625	NlpC/P60 domain-containing protein	NA
UHGV-0136354_41	eggNOG-mapper	632245.CLP_1284	NlpC/P60 family	NA
UHGV-0136354_41	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0136354_41	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0136354_42	PHROG	phrog_579	NA	unknown function
UHGV-0136354_42	UniRef90	UniRef90_A0A6B4YR72	NA	NA
UHGV-0136354_42	eggNOG-mapper	632245.CLP_1285	NA	NA
UHGV-0136354_42	Pfam	PF10844	NA	DUF2577
UHGV-0136354_43	PHROG	phrog_120	baseplate protein	tail
UHGV-0136354_43	UniRef90	UniRef90_UPI0003037EF0	NA	NA
UHGV-0136354_43	eggNOG-mapper	632245.CLP_1286	NA	NA
UHGV-0136354_43	Pfam	PF10934	NA	DUF2634
UHGV-0136354_43	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0136354_43	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0136354_44	PHROG	phrog_6	baseplate protein	tail
UHGV-0136354_44	UniRef90	UniRef90_A0A7U9H1Y8	Baseplate_J domain-containing protein	NA
UHGV-0136354_44	eggNOG-mapper	632245.CLP_1287	Baseplate J-like protein	NA
UHGV-0136354_44	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0136354_44	COG	COG3299	NA	NA
UHGV-0136354_44	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0136354_45	PHROG	phrog_13589	NA	unknown function
UHGV-0136354_45	UniRef90	UniRef90_A0A2N0K390	Phosphoglucomutase	NA
UHGV-0136354_45	eggNOG-mapper	632245.CLP_1288	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0136354_45	COG	COG5301	Phage-related tail fiber protein	NA