UHGV-0136472

Genome information

Genome length 58,665 bps

CDS count 82

Completeness 100.00% (complete)

geNomad score 0.9742

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136472
vOTU ID	vOTU-045991
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_366841
BioSample	SAMN03283285
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9742
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.35
Jumbo phage	No

Genome content
Genome length	58,665 bps
GC content	46.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	82
CDS density	92.77%
Average CDS length	667.46 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136472_1	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0136472_1	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0136472_1	UniRef90	UniRef90_UPI0004179D43	PBSX family phage terminase large subunit	NA
UHGV-0136472_1	eggNOG-mapper	1033733.CAEK01000007_gene1653	Terminase RNAseH like domain	NA
UHGV-0136472_1	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0136472_1	COG	COG1783	Phage terminase large subunit	NA
UHGV-0136472_1	Structural annotation	PF04466, MF_04145, NF002340, COG5410	NA	NA
UHGV-0136472_2	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0136472_2	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0136472_2	Structural annotation	PF16677	NA	NA
UHGV-0136472_3	PHROG	phrog_13890	NA	unknown function
UHGV-0136472_3	UniRef90	UniRef90_A0A6L6LMN7	Antitoxin	NA
UHGV-0136472_3	eggNOG-mapper	1501230.ET33_16755	NA	NA
UHGV-0136472_3	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0136472_6	Structural annotation	PF19129, NF007348, COG5569	NA	NA
UHGV-0136472_10	PHROG	phrog_25567	NA	unknown function
UHGV-0136472_10	eggNOG-mapper	888727.HMPREF9092_1413	Helix-turn-helix	NA
UHGV-0136472_10	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0136472_10	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0136472_11	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0136472_11	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0136472_12	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0136472_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136472_12	Structural annotation	PF01381, NF040507, COG3655	NA	NA
UHGV-0136472_17	UniRef90	UniRef90_A0A372V4S2	XRE family transcriptional regulator	NA
UHGV-0136472_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136472_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0136472_17	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0136472_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0136472_19	UniRef90	UniRef90_A0A7U9T6J8	HTH cro/C1-type domain-containing protein	NA
UHGV-0136472_19	eggNOG-mapper	97138.C820_00783	Helix-turn-helix domain	NA
UHGV-0136472_19	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0136472_19	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0136472_24	PHROG	phrog_674	NA	unknown function
UHGV-0136472_24	UniRef90	UniRef90_UPI001AC97819	NA	NA
UHGV-0136472_24	eggNOG-mapper	1227266.HMPREF1551_00563	NA	NA
UHGV-0136472_24	Pfam	PF07083	NA	DUF1351
UHGV-0136472_24	Structural annotation	PF07083	NA	NA
UHGV-0136472_25	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0136472_25	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0136472_25	UniRef90	UniRef90_A0A355KWE4	Recombinase	NA
UHGV-0136472_25	eggNOG-mapper	1408437.JNJN01000039_gene372	RecT family	NA
UHGV-0136472_25	Pfam	PF03837	RecT family	RecT
UHGV-0136472_25	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0136472_25	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0136472_25	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0136472_26	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0136472_26	UniRef90	UniRef90_A0A7X8XIL0	MBL fold metallo-hydrolase	NA
UHGV-0136472_26	eggNOG-mapper	638301.HMPREF0444_1544	Metallo-beta-lactamase superfamily	NA
UHGV-0136472_26	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0136472_26	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0136472_26	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0136472_28	Structural annotation	PF13744, TIGR03070, COG3655	NA	NA
UHGV-0136472_29	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0136472_29	eggNOG-mapper	1423724.BAMM01000020_gene1808	NA	NA
UHGV-0136472_29	COG	COG3756	NA	NA
UHGV-0136472_29	Structural annotation	PF19808	NA	NA
UHGV-0136472_30	PHROG	phrog_9804	NA	unknown function
UHGV-0136472_30	UniRef90	UniRef90_R6LQQ5	Inhibitor_G39P domain-containing protein	NA
UHGV-0136472_30	eggNOG-mapper	1499683.CCFF01000013_gene503	Loader and inhibitor of phage G40P	NA
UHGV-0136472_30	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0136472_30	Structural annotation	PF11417	NA	NA
UHGV-0136472_34	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0136472_34	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0136472_34	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0136472_34	Pfam	PF00692	dUTPase	dUTPase
UHGV-0136472_34	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0136472_34	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0136472_38	PHROG	phrog_9300	NA	unknown function
UHGV-0136472_39	Structural annotation	PF06289, COG1582	NA	NA
UHGV-0136472_48	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0136472_48	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0136472_48	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0136472_48	eggNOG-mapper	556263.FSEG_00477	NA	NA
UHGV-0136472_48	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0136472_49	PHROG	phrog_474	phosphofructokinase	other
UHGV-0136472_49	UniRef90	UniRef90_UPI00195F5FF7	NA	NA
UHGV-0136472_49	eggNOG-mapper	1095750.HMPREF9970_1026	NA	NA
UHGV-0136472_49	Pfam	PF19905	NA	DUF6378
UHGV-0136472_49	Structural annotation	PF19905	NA	NA
UHGV-0136472_52	PHROG	phrog_200	lipoprotein	other
UHGV-0136472_52	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0136472_53	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0136472_53	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0136472_53	UniRef90	UniRef90_A0A7C6GL00	Single-stranded DNA-binding protein	NA
UHGV-0136472_53	eggNOG-mapper	1232443.BAIA02000073_gene513	Single-strand binding protein family	NA
UHGV-0136472_53	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0136472_53	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0136472_53	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0136472_53	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0136472_53	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0136472_54	PHROG	phrog_28936	NA	unknown function
UHGV-0136472_54	eggNOG-mapper	573061.Clocel_3563	NA	NA
UHGV-0136472_54	Structural annotation	PF11645, MF_01490, NF040854	NA	NA
UHGV-0136472_57	PHROG	phrog_22978	NA	unknown function
UHGV-0136472_57	eggNOG-mapper	1321782.HMPREF1986_00356	NA	NA
UHGV-0136472_57	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0136472_57	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0136472_57	Pfam	PF18760	ADP-Ribosyltransferase in polyvalent proteins	ART-PolyVal
UHGV-0136472_58	KOfam	K14059	int; integrase	NA
UHGV-0136472_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0136472_58	UniRef90	UniRef90_A0A353J242	Site-specific integrase	NA
UHGV-0136472_58	eggNOG-mapper	887325.HMPREF0381_0346	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0136472_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0136472_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0136472_58	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0136472_59	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0136472_61	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0136472_64	eggNOG-mapper	1121334.KB911071_gene1966	NA	NA
UHGV-0136472_66	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0136472_66	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0136472_66	UniRef90	UniRef90_A0A1E1VI95	Muramidase	NA
UHGV-0136472_66	eggNOG-mapper	1158601.I585_02846	Peptidase family M23	NA
UHGV-0136472_66	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0136472_66	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0136472_66	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0136472_66	Structural annotation	PF01551, PF09992, NF040883, COG0739, COG3698	NA	NA
UHGV-0136472_67	PHROG	phrog_4105	NA	unknown function
UHGV-0136472_67	eggNOG-mapper	397288.C806_00056	NA	NA
UHGV-0136472_68	PHROG	phrog_30034	NA	unknown function
UHGV-0136472_68	UniRef90	UniRef90_A0A3D1XGA4	Chitin-binding type-3 domain-containing protein	NA
UHGV-0136472_68	eggNOG-mapper	1235796.C815_00903	NA	NA
UHGV-0136472_68	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0136472_70	PHROG	phrog_19111	NA	unknown function
UHGV-0136472_70	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0136472_71	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0136472_71	Structural annotation	PF10651	NA	NA
UHGV-0136472_74	eggNOG-mapper	1449126.JQKL01000002_gene1688	NA	NA
UHGV-0136472_74	Structural annotation	PF11134, MF_00923, NF010237, NF038128, COG5276	NA	NA
UHGV-0136472_75	Structural annotation	PF20387	NA	NA
UHGV-0136472_77	PHROG	phrog_14242	major head protein	head and packaging
UHGV-0136472_77	UniRef90	UniRef90_A0A355JD53	Phage major capsid protein	NA
UHGV-0136472_77	eggNOG-mapper	588581.Cpap_1528	NA	NA
UHGV-0136472_77	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-0136472_77	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-0136472_79	PHROG	phrog_156	portal protein	head and packaging
UHGV-0136472_79	eggNOG-mapper	588581.Cpap_1526	NA	NA
UHGV-0136472_79	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0136472_82	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0136472_82	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0136472_82	UniRef90	UniRef90_A0A3S1ABC6	PBSX family phage terminase large subunit	NA
UHGV-0136472_82	eggNOG-mapper	696281.Desru_1088	Phage terminase large subunit	NA
UHGV-0136472_82	COG	COG1783	Phage terminase large subunit	NA
UHGV-0136472_82	Structural annotation	PF17288, MF_04145, TIGR01547, COG1783	NA	NA