UHGV-0136602

Genome information

Genome length 37,922 bps

CDS count 56

Completeness 90.30% (high-quality)

geNomad score 0.9829

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136602
vOTU ID	vOTU-067280
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_384060
BioSample	SAMN04209230
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.30% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9829
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.85
Jumbo phage	No

Genome content
Genome length	37,922 bps
GC content	55.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	96.40%
Average CDS length	656.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136602_1	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0136602_1	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0136602_1	UniRef90	UniRef90_A0A810PZK9	ParB domain-containing protein	NA
UHGV-0136602_1	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0136602_1	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0136602_1	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0136602_1	COG	COG0863	DNA modification methylase	NA
UHGV-0136602_1	Structural annotation	PF02195, MF_02015, TIGR00180, COG5119	NA	NA
UHGV-0136602_2	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0136602_2	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0136602_2	UniRef90	UniRef90_A0A810Q3Z7	N6_N4_Mtase domain-containing protein	NA
UHGV-0136602_2	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0136602_2	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0136602_2	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0136602_2	COG	COG0863	DNA modification methylase	NA
UHGV-0136602_2	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0136602_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0136602_4	PHROG	phrog_10250	NA	unknown function
UHGV-0136602_4	UniRef90	UniRef90_A0A1I3QR69	Phage terminase, large subunit, PBSX family	NA
UHGV-0136602_4	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0136602_4	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0136602_4	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0136602_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0136602_4	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0136602_5	PHROG	phrog_533	portal protein	head and packaging
UHGV-0136602_5	UniRef90	UniRef90_UPI00189D71DB	phage capsid protein	NA
UHGV-0136602_5	eggNOG-mapper	1232443.BAIA02000078_gene36	NA	NA
UHGV-0136602_5	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0136602_6	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0136602_6	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0136602_6	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0136602_6	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0136602_6	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0136602_6	COG	COG2369	NA	NA
UHGV-0136602_6	Structural annotation	PF06152	NA	NA
UHGV-0136602_7	PHROG	phrog_3675	NA	unknown function
UHGV-0136602_7	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0136602_7	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0136602_7	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0136602_7	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0136602_9	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0136602_9	UniRef90	UniRef90_UPI00189CE417	phage scaffolding protein	NA
UHGV-0136602_9	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0136602_9	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0136602_9	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0136602_10	PHROG	phrog_909	major head protein	head and packaging
UHGV-0136602_10	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0136602_10	eggNOG-mapper	1497679.EP56_02915	NA	NA
UHGV-0136602_10	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0136602_10	Structural annotation	PF02924	NA	NA
UHGV-0136602_11	PHROG	phrog_29	major head protein	head and packaging
UHGV-0136602_11	UniRef90	UniRef90_UPI0004AE1FFD	major capsid protein	NA
UHGV-0136602_11	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0136602_11	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0136602_11	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0136602_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0136602_12	eggNOG-mapper	663278.Ethha_0095	NA	NA
UHGV-0136602_13	PHROG	phrog_3366	NA	unknown function
UHGV-0136602_13	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0136602_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0136602_14	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0136602_14	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0136602_14	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0136602_14	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0136602_15	PHROG	phrog_3266	tail completion	connector
UHGV-0136602_15	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0136602_15	Structural annotation	PF12691	NA	NA
UHGV-0136602_16	PHROG	phrog_3099	NA	unknown function
UHGV-0136602_16	eggNOG-mapper	1235797.C816_04186	NA	NA
UHGV-0136602_16	Structural annotation	TIGR02126	NA	NA
UHGV-0136602_17	PHROG	phrog_11299	NA	unknown function
UHGV-0136602_17	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0136602_17	Structural annotation	PF10666	NA	NA
UHGV-0136602_18	PHROG	phrog_706	NA	unknown function
UHGV-0136602_18	UniRef90	UniRef90_UPI000682A80B	Gp15 family bacteriophage protein	NA
UHGV-0136602_18	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0136602_18	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0136602_18	Structural annotation	PF06854	NA	NA
UHGV-0136602_19	PHROG	phrog_806	NA	unknown function
UHGV-0136602_19	UniRef90	UniRef90_UPI00137B5163	NA	NA
UHGV-0136602_19	eggNOG-mapper	397290.C810_05150	NA	NA
UHGV-0136602_19	Pfam	PF11611	NA	DUF4352
UHGV-0136602_19	Structural annotation	PF11611, PF06832, MF_00791, NF003967, COG2967	NA	NA
UHGV-0136602_20	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0136602_20	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0136602_20	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0136602_20	COG	COG1511	NA	NA
UHGV-0136602_20	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0136602_21	PHROG	phrog_1194	NA	unknown function
UHGV-0136602_21	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0136602_21	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0136602_22	PHROG	phrog_13879	NA	unknown function
UHGV-0136602_22	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0136602_22	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0136602_23	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0136602_25	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0136602_25	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0136602_26	PHROG	phrog_37900	NA	unknown function
UHGV-0136602_26	UniRef90	UniRef90_UPI001C3EA4DF	NA	NA
UHGV-0136602_26	eggNOG-mapper	552398.HMPREF0866_03098	NA	NA
UHGV-0136602_26	Pfam	PF19789	NA	DUF6273
UHGV-0136602_26	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0136602_26	Structural annotation	PF19789	NA	NA
UHGV-0136602_27	PHROG	phrog_29409	NA	unknown function
UHGV-0136602_29	UniRef90	UniRef90_A0A521IRB0	Chitin-binding type-3 domain-containing protein	NA
UHGV-0136602_29	Structural annotation	PF14600	NA	NA
UHGV-0136602_30	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0136602_30	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0136602_30	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0136602_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0136602_30	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0136602_30	COG	COG2369	NA	NA
UHGV-0136602_30	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0136602_31	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0136602_31	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0136602_31	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0136602_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0136602_31	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0136602_31	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0136602_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0136602_32	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0136602_32	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0136602_32	Structural annotation	PF06810	NA	NA
UHGV-0136602_33	PHROG	phrog_544	major head protein	head and packaging
UHGV-0136602_33	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0136602_33	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0136602_33	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0136602_33	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0136602_35	PHROG	phrog_17977	NA	unknown function
UHGV-0136602_35	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0136602_35	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0136602_36	Structural annotation	PF11367	NA	NA
UHGV-0136602_37	PHROG	phrog_885	major tail protein	tail
UHGV-0136602_37	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0136602_37	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0136602_37	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0136602_38	PHROG	phrog_18646	NA	unknown function
UHGV-0136602_38	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-0136602_40	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0136602_40	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0136602_40	COG	COG5412	Phage-related protein	NA
UHGV-0136602_40	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0136602_41	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0136602_42	PHROG	phrog_13879	NA	unknown function
UHGV-0136602_42	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0136602_42	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0136602_43	PHROG	phrog_18725	NA	unknown function
UHGV-0136602_43	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0136602_44	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0136602_44	Structural annotation	PF20055, MF_03008, NF010730, COG3940	NA	NA
UHGV-0136602_45	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0136602_45	Structural annotation	PF07484	NA	NA
UHGV-0136602_48	PHROG	phrog_6918	holin	lysis
UHGV-0136602_48	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0136602_48	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0136602_48	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0136602_48	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0136602_49	PHROG	phrog_14030	NA	unknown function
UHGV-0136602_49	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-0136602_49	eggNOG-mapper	1121866.AUGK01000003_gene1444	amidase activity	NA
UHGV-0136602_49	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0136602_50	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0136602_51	PHROG	phrog_3754	NA	unknown function
UHGV-0136602_51	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0136602_52	PHROG	phrog_21718	NA	unknown function
UHGV-0136602_52	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0136602_53	PHROG	phrog_22984	NA	unknown function
UHGV-0136602_54	PHROG	phrog_16490	NA	unknown function
UHGV-0136602_54	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0136602_55	PHROG	phrog_20016	NA	unknown function
UHGV-0136602_55	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0136602_55	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0136602_55	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0136602_56	eggNOG-mapper	1235790.C805_00063	NA	NA