UHGV-0136700

Genome information

Genome length 42,722 bps

CDS count 60

Completeness 98.92% (high-quality)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136700
vOTU ID	vOTU-014830
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_392975
BioSample	SAMN04436958
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.92% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.9
Jumbo phage	No

Genome content
Genome length	42,722 bps
GC content	38.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	90.83%
Average CDS length	648.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136700_3	KOfam	K11382	pgtP; MFS transporter, OPA family, phosphoglycerate transporter protein	NA
UHGV-0136700_3	PHROG	phrog_2034	NA	unknown function
UHGV-0136700_3	UniRef90	UniRef90_A0A6N3AG77	Phosphoglycerate transporter protein	NA
UHGV-0136700_3	eggNOG-mapper	479436.Vpar_0387	Transporter	NA
UHGV-0136700_3	Pfam	PF07690	Major Facilitator Superfamily	MFS_1
UHGV-0136700_3	COG	COG2271	Sugar phosphate permease	NA
UHGV-0136700_4	UniRef90	UniRef90_A0A2S7Z108	NA	NA
UHGV-0136700_4	eggNOG-mapper	479436.Vpar_0386	NA	NA
UHGV-0136700_7	PHROG	phrog_5867	endolysin	lysis
UHGV-0136700_7	UniRef90	UniRef90_D6KLI5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0136700_7	eggNOG-mapper	1128111.HMPREF0870_01749	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0136700_7	Structural annotation	MF_04111	NA	NA
UHGV-0136700_8	PHROG	phrog_27828	NA	unknown function
UHGV-0136700_8	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0136700_8	eggNOG-mapper	1128111.HMPREF0870_01750	NA	NA
UHGV-0136700_9	PHROG	phrog_23091	NA	unknown function
UHGV-0136700_11	Structural annotation	PF21611	NA	NA
UHGV-0136700_12	KOfam	K14059	int; integrase	NA
UHGV-0136700_12	PHROG	phrog_1	integrase	integration and excision
UHGV-0136700_12	UniRef90	UniRef90_D6KLI0	XerC/D integrase-recombinase protein (XerC/D)	NA
UHGV-0136700_12	eggNOG-mapper	546273.VEIDISOL_00732	Belongs to the 'phage' integrase family	NA
UHGV-0136700_12	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0136700_12	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0136700_12	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0136700_12	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0136700_13	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0136700_13	UniRef90	UniRef90_UPI001CD44E8B	phage tail protein	NA
UHGV-0136700_13	eggNOG-mapper	1273103.NM10_08074	Phage tail-collar fibre protein	NA
UHGV-0136700_13	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0136700_13	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0136700_13	Structural annotation	PF12571	NA	NA
UHGV-0136700_14	PHROG	phrog_14404	baseplate protein	tail
UHGV-0136700_14	UniRef90	UniRef90_A0A134C9I1	Phage tail protein I-like protein	NA
UHGV-0136700_14	eggNOG-mapper	1273103.NM10_08069	Phage tail protein (Tail_P2_I)	NA
UHGV-0136700_14	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0136700_14	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0136700_14	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0136700_14	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0136700_15	PHROG	phrog_6	baseplate protein	tail
UHGV-0136700_15	UniRef90	UniRef90_A0A811GJD5	Baseplate_J domain-containing protein	NA
UHGV-0136700_15	eggNOG-mapper	1064535.MELS_1111	Baseplate J-like protein	NA
UHGV-0136700_15	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0136700_15	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0136700_15	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0136700_16	KOfam	K06903	NA	NA
UHGV-0136700_16	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0136700_16	UniRef90	UniRef90_A0A134C9E2	Putative lysozyme	NA
UHGV-0136700_16	eggNOG-mapper	1064535.MELS_1110	GPW Gp25 family protein	NA
UHGV-0136700_16	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0136700_16	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0136700_16	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0136700_17	KOfam	K06906	NA	NA
UHGV-0136700_17	PHROG	phrog_76	tail protein	tail
UHGV-0136700_17	UniRef90	UniRef90_UPI000F8D1A61	phage tail protein	NA
UHGV-0136700_17	eggNOG-mapper	1262914.BN533_01714	Phage P2 GpU	NA
UHGV-0136700_17	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0136700_17	COG	COG3499	NA	NA
UHGV-0136700_17	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0136700_18	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0136700_18	UniRef90	UniRef90_D6KLH4	Prophage MuMc02, baseplate assembly protein V	NA
UHGV-0136700_18	eggNOG-mapper	1064535.MELS_1108	Phage baseplate assembly protein V	NA
UHGV-0136700_18	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0136700_18	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0136700_18	Structural annotation	PF05606, MF_00216, TIGR01644, COG4540	NA	NA
UHGV-0136700_19	KOfam	K06905	NA	NA
UHGV-0136700_19	PHROG	phrog_52	tail protein	tail
UHGV-0136700_19	UniRef90	UniRef90_A0A134C1C3	Phage late control D protein	NA
UHGV-0136700_19	eggNOG-mapper	1273103.NM10_08044	COG3500 Phage protein D	NA
UHGV-0136700_19	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-0136700_19	COG	COG3500	NA	NA
UHGV-0136700_19	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0136700_20	PHROG	phrog_46	tail protein	tail
UHGV-0136700_20	UniRef90	UniRef90_A0A134C180	Phage Tail Protein X	NA
UHGV-0136700_20	eggNOG-mapper	1064535.MELS_1106	Phage Tail Protein X	NA
UHGV-0136700_20	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0136700_20	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0136700_20	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0136700_21	PHROG	phrog_18863	NA	unknown function
UHGV-0136700_21	eggNOG-mapper	861450.HMPREF0080_02057	tape measure	NA
UHGV-0136700_21	COG	COG4805	NA	NA
UHGV-0136700_22	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0136700_22	UniRef90	UniRef90_J4TSA4	Mu-like prophage FluMu protein gp41	NA
UHGV-0136700_22	eggNOG-mapper	936573.HMPREF1147_1728	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0136700_22	Structural annotation	PF10109	NA	NA
UHGV-0136700_23	KOfam	K06908	NA	NA
UHGV-0136700_23	PHROG	phrog_55	head closure	connector
UHGV-0136700_23	UniRef90	UniRef90_A0A134CAG3	Phage tail tube protein FII	NA
UHGV-0136700_23	eggNOG-mapper	1064535.MELS_1103	tail tube protein	NA
UHGV-0136700_23	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0136700_23	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0136700_23	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0136700_24	KOfam	K06907	NA	NA
UHGV-0136700_24	PHROG	phrog_23	tail sheath	tail
UHGV-0136700_24	UniRef90	UniRef90_A0A811GKC4	Prophage major tail sheath protein	NA
UHGV-0136700_24	eggNOG-mapper	1064535.MELS_1102	COG3497 Phage tail sheath protein FI	NA
UHGV-0136700_24	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0136700_24	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0136700_26	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0136700_26	eggNOG-mapper	1064535.MELS_1100	NA	NA
UHGV-0136700_26	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0136700_27	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0136700_27	UniRef90	UniRef90_UPI001C063072	phage tail protein	NA
UHGV-0136700_27	eggNOG-mapper	1273103.NM10_02237	Prophage minor tail protein Z (GPZ)	NA
UHGV-0136700_27	Structural annotation	PF06763	NA	NA
UHGV-0136700_28	PHROG	phrog_2551	minor tail protein	tail
UHGV-0136700_28	UniRef90	UniRef90_A0A127SL33	ATP-binding sugar transporter from pro-phage	NA
UHGV-0136700_28	eggNOG-mapper	478749.BRYFOR_07540	ATP-binding sugar transporter from pro-phage	NA
UHGV-0136700_28	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0136700_30	PHROG	phrog_29	major head protein	head and packaging
UHGV-0136700_30	UniRef90	UniRef90_UPI00073E3456	major capsid protein	NA
UHGV-0136700_30	eggNOG-mapper	1064535.MELS_1096	Phage major capsid protein E	NA
UHGV-0136700_30	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0136700_30	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0136700_31	PHROG	phrog_49	head decoration	head and packaging
UHGV-0136700_31	UniRef90	UniRef90_UPI000F8CEB9D	head decoration protein	NA
UHGV-0136700_31	eggNOG-mapper	936573.HMPREF1147_1719	Bacteriophage lambda head decoration protein D	NA
UHGV-0136700_31	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-0136700_31	Structural annotation	PF02924, COG5471	NA	NA
UHGV-0136700_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0136700_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0136700_32	UniRef90	UniRef90_A0A811GJI8	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0136700_32	eggNOG-mapper	1064535.MELS_1094	Clp protease	NA
UHGV-0136700_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0136700_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0136700_32	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0136700_33	PHROG	phrog_21	portal protein	head and packaging
UHGV-0136700_33	UniRef90	UniRef90_A0A134CAF6	Phage portal protein, lambda family (Fragment)	NA
UHGV-0136700_33	eggNOG-mapper	1064535.MELS_1093	Phage portal protein	NA
UHGV-0136700_33	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0136700_33	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0136700_33	COG	COG5511	Phage capsid protein	NA
UHGV-0136700_33	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0136700_34	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0136700_34	UniRef90	UniRef90_UPI0019D0AF1B	NA	NA
UHGV-0136700_34	eggNOG-mapper	1064535.MELS_1092	NA	NA
UHGV-0136700_34	Pfam	PF19645	NA	DUF6148
UHGV-0136700_34	Structural annotation	PF19645	NA	NA
UHGV-0136700_35	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0136700_35	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0136700_35	UniRef90	UniRef90_A0A134CAE4	Phage terminase large subunit (Fragment)	NA
UHGV-0136700_35	eggNOG-mapper	1064535.MELS_1091	Phage terminase large subunit (GpA)	NA
UHGV-0136700_35	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0136700_35	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0136700_35	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0136700_35	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0136700_35	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0136700_36	UniRef90	UniRef90_B0UW39	Methylase_S domain-containing protein	NA
UHGV-0136700_36	eggNOG-mapper	706434.HMPREF9429_00532	NA	NA
UHGV-0136700_36	Structural annotation	PF01420	NA	NA
UHGV-0136700_37	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0136700_37	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0136700_37	UniRef90	UniRef90_A0A811GNZ1	Putative type I restriction enzymeP M protein	NA
UHGV-0136700_37	eggNOG-mapper	706434.HMPREF9429_00533	Type I restriction-modification system, M subunit	NA
UHGV-0136700_37	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0136700_37	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0136700_37	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0136700_37	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0136700_38	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0136700_38	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0136700_38	eggNOG-mapper	1273103.NM10_02282	NA	NA
UHGV-0136700_38	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0136700_38	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0136700_40	PHROG	phrog_1558	NA	unknown function
UHGV-0136700_40	UniRef90	UniRef90_UPI0006B5171F	helix-turn-helix domain-containing protein	NA
UHGV-0136700_40	eggNOG-mapper	1401067.HMPREF0872_03430	NA	NA
UHGV-0136700_40	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-0136700_41	PHROG	phrog_1672	NA	unknown function
UHGV-0136700_43	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0136700_43	UniRef90	UniRef90_D6KLF0	Prophage Lp2 protein 24	NA
UHGV-0136700_43	eggNOG-mapper	60520.HR47_13580	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0136700_43	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0136700_43	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0136700_44	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0136700_44	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0136700_44	UniRef90	UniRef90_UPI001A5B77C0	ATP-binding protein	NA
UHGV-0136700_44	eggNOG-mapper	1401067.HMPREF0872_03455	DNA-dependent DNA replication	NA
UHGV-0136700_44	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0136700_44	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0136700_44	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0136700_45	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0136700_45	UniRef90	UniRef90_S4TZS9	DnaD domain protein-like protein	NA
UHGV-0136700_45	eggNOG-mapper	1401067.HMPREF0872_00400	NA	NA
UHGV-0136700_45	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0136700_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0136700_45	Structural annotation	PF14297, TIGR01446, TIGR01714	NA	NA
UHGV-0136700_46	PHROG	phrog_29533	NA	unknown function
UHGV-0136700_47	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0136700_47	UniRef90	UniRef90_F5KZL7	Lactamase_B domain-containing protein	NA
UHGV-0136700_47	eggNOG-mapper	1401067.HMPREF0872_03470	COG1235 Metal-dependent hydrolases of the beta-lactamase superfamily I	NA
UHGV-0136700_47	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0136700_47	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0136700_47	Structural annotation	PF12706, MF_01818, NF041851, COG5212	NA	NA
UHGV-0136700_48	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0136700_48	UniRef90	UniRef90_S4U0C4	RecT protein-like protein	NA
UHGV-0136700_48	eggNOG-mapper	563192.HMPREF0179_00147	NA	NA
UHGV-0136700_48	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0136700_49	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0136700_49	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0136700_49	UniRef90	UniRef90_F5KZL5	BRO family, N-terminal domain protein	NA
UHGV-0136700_49	eggNOG-mapper	1401067.HMPREF0872_03480	BRO family, N-terminal domain	NA
UHGV-0136700_49	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0136700_49	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0136700_49	COG	COG3617	Prophage antirepressor	NA
UHGV-0136700_49	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0136700_50	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0136700_50	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0136700_50	UniRef90	UniRef90_A0A660M765	AAA_23 domain-containing protein	NA
UHGV-0136700_50	eggNOG-mapper	1401067.HMPREF0872_03485	nuclear chromosome segregation	NA
UHGV-0136700_50	Pfam	PF13476	AAA domain	AAA_23
UHGV-0136700_50	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0136700_50	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0136700_51	PHROG	phrog_16315	NA	unknown function
UHGV-0136700_51	UniRef90	UniRef90_UPI00040F6C65	PcfJ domain-containing protein	NA
UHGV-0136700_51	eggNOG-mapper	1401067.HMPREF0872_00420	PcfJ-like protein	NA
UHGV-0136700_51	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0136700_51	Structural annotation	PF14284	NA	NA
UHGV-0136700_52	PHROG	phrog_29844	NA	unknown function
UHGV-0136700_53	PHROG	phrog_35266	NA	unknown function
UHGV-0136700_53	UniRef90	UniRef90_D6KLE0	Putative choline binding protein A	NA
UHGV-0136700_54	UniRef90	UniRef90_D6KLD9	Surface antigen (D15)	NA
UHGV-0136700_56	Structural annotation	PF19901	NA	NA
UHGV-0136700_57	PHROG	phrog_3306	NA	unknown function
UHGV-0136700_57	UniRef90	UniRef90_UPI001D0212B2	NA	NA
UHGV-0136700_57	eggNOG-mapper	1232428.CAVO010000037_gene1306	NA	NA
UHGV-0136700_57	AcrCatalog	cluster_5078	NA	NA
UHGV-0136700_57	Pfam	PF19670	NA	DUF6173
UHGV-0136700_60	PHROG	phrog_1090	NA	unknown function
UHGV-0136700_60	UniRef90	UniRef90_A0A4U9YD42	CRISPR associated protein Cas2	NA
UHGV-0136700_60	eggNOG-mapper	1234679.BN424_3301	NA	NA
UHGV-0136700_60	Structural annotation	PF09827, MF_01471, TIGR01573, COG1343	NA	NA