UHGV-0136898

Genome information

Genome length 41,016 bps

CDS count 71

Completeness 99.90% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136898
vOTU ID	vOTU-012453
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_366187
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.9
Jumbo phage	No

Genome content
Genome length	41,016 bps
GC content	41.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	71
CDS density	93.38%
Average CDS length	543.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136898_2	PHROG	phrog_28328	NA	unknown function
UHGV-0136898_2	eggNOG-mapper	428125.CLOLEP_01381	NA	NA
UHGV-0136898_3	UniRef90	UniRef90_UPI0004E194C7	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0136898_3	eggNOG-mapper	1235790.C805_00057	NA	NA
UHGV-0136898_3	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0136898_4	PHROG	phrog_37604	NA	unknown function
UHGV-0136898_4	eggNOG-mapper	457412.RSAG_01109	NA	NA
UHGV-0136898_5	PHROG	phrog_3754	NA	unknown function
UHGV-0136898_5	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0136898_6	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0136898_6	UniRef90	UniRef90_A0A355KVT5	Phage capsid protein (Fragment)	NA
UHGV-0136898_6	eggNOG-mapper	397290.C810_05201	Phage minor capsid protein 2	NA
UHGV-0136898_6	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0136898_6	COG	COG2369	NA	NA
UHGV-0136898_6	Structural annotation	PF06152	NA	NA
UHGV-0136898_7	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0136898_7	eggNOG-mapper	1235790.C805_00048	NA	NA
UHGV-0136898_7	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0136898_7	Structural annotation	PF11114	NA	NA
UHGV-0136898_8	PHROG	phrog_533	portal protein	head and packaging
UHGV-0136898_8	UniRef90	UniRef90_A0A1C5MB20	Phage portal protein, putative, A118 family	NA
UHGV-0136898_8	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0136898_8	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0136898_9	PHROG	phrog_1233	NA	unknown function
UHGV-0136898_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0136898_10	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0136898_10	UniRef90	UniRef90_R0BLA8	PBSX family phage terminase, large subunit	NA
UHGV-0136898_10	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0136898_10	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0136898_10	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0136898_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0136898_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0136898_10	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0136898_11	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0136898_11	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0136898_11	UniRef90	UniRef90_A0A1I0K7H5	Phage terminase small subunit	NA
UHGV-0136898_11	eggNOG-mapper	1280692.AUJL01000027_gene2167	Terminase small subunit	NA
UHGV-0136898_11	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0136898_11	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0136898_11	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0136898_12	PHROG	phrog_33130	NA	unknown function
UHGV-0136898_12	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0136898_12	Structural annotation	PF10922	NA	NA
UHGV-0136898_14	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0136898_14	PHROG	phrog_1	integrase	integration and excision
UHGV-0136898_14	UniRef90	UniRef90_A0A6L5YGD3	Tyrosine-type recombinase/integrase	NA
UHGV-0136898_14	eggNOG-mapper	1304866.K413DRAFT_1209	Belongs to the 'phage' integrase family	NA
UHGV-0136898_14	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0136898_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0136898_14	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0136898_14	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0136898_15	KOfam	K03040	rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]	NA
UHGV-0136898_15	UniRef90	UniRef90_R7QYD6	DNA-directed RNA polymerase subunit alpha	NA
UHGV-0136898_15	eggNOG-mapper	1511.CLOST_2170	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-0136898_15	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0136898_15	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-0136898_17	UniRef90	UniRef90_A0A352SFV2	NA	NA
UHGV-0136898_17	Pfam	PF04448	NA	DUF551
UHGV-0136898_24	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0136898_24	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0136898_24	UniRef90	UniRef90_A0A6L5YG72	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0136898_24	eggNOG-mapper	742740.HMPREF9474_04317	C-5 cytosine-specific DNA methylase	NA
UHGV-0136898_24	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0136898_24	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0136898_24	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0136898_24	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0136898_26	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0136898_26	UniRef90	UniRef90_A0A316M8X6	PAPS_reduct domain-containing protein	NA
UHGV-0136898_26	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0136898_26	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0136898_26	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0136898_26	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0136898_28	PHROG	phrog_1578	NA	unknown function
UHGV-0136898_29	PHROG	phrog_874	NA	unknown function
UHGV-0136898_29	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0136898_29	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0136898_29	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0136898_30	PHROG	phrog_20593	NA	unknown function
UHGV-0136898_31	eggNOG-mapper	97139.C824_00134	NA	NA
UHGV-0136898_32	PHROG	phrog_8684	NA	unknown function
UHGV-0136898_32	UniRef90	UniRef90_UPI00164AC5B9	YopX family protein	NA
UHGV-0136898_32	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0136898_32	Pfam	PF09643	YopX protein	YopX
UHGV-0136898_32	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0136898_37	PHROG	phrog_19106	NA	unknown function
UHGV-0136898_37	UniRef90	UniRef90_A0A6L5YG76	GIY-YIG nuclease family protein	NA
UHGV-0136898_37	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0136898_37	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0136898_37	Structural annotation	TIGR01453	NA	NA
UHGV-0136898_38	PHROG	phrog_15768	NA	unknown function
UHGV-0136898_38	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-0136898_38	Structural annotation	PF01978, MF_01819, TIGR01610, COG3355	NA	NA
UHGV-0136898_39	Structural annotation	PF21715, TIGR04176, COG1654	NA	NA
UHGV-0136898_40	PHROG	phrog_398	NA	unknown function
UHGV-0136898_40	UniRef90	UniRef90_UPI00068C968F	putative HNHc nuclease	NA
UHGV-0136898_40	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0136898_40	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0136898_40	Structural annotation	PF16784	NA	NA
UHGV-0136898_41	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0136898_41	UniRef90	UniRef90_A0A3R6H986	NA	NA
UHGV-0136898_41	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0136898_41	Pfam	PF06378	NA	DUF1071
UHGV-0136898_41	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0136898_42	eggNOG-mapper	33035.JPJF01000135_gene5083	NA	NA
UHGV-0136898_44	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0136898_44	PHROG	phrog_4433	NA	unknown function
UHGV-0136898_44	eggNOG-mapper	665950.HMPREF1025_01373	regulation of DNA-templated transcription, elongation	NA
UHGV-0136898_44	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0136898_44	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0136898_47	UniRef90	UniRef90_K4ZGH7	HTH cro/C1-type domain-containing protein	NA
UHGV-0136898_47	eggNOG-mapper	411460.RUMTOR_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0136898_48	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0136898_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0136898_48	UniRef90	UniRef90_A0A317UDF6	HTH cro/C1-type domain-containing protein	NA
UHGV-0136898_48	eggNOG-mapper	1536772.R70723_06535	addiction module antidote protein HigA	NA
UHGV-0136898_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136898_48	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0136898_48	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0136898_49	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0136898_49	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0136898_49	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0136898_49	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0136898_49	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0136898_50	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0136898_50	PHROG	phrog_95	integrase	integration and excision
UHGV-0136898_50	UniRef90	UniRef90_A0A1Q6KI87	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0136898_50	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-0136898_50	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0136898_50	Pfam	PF07508	Recombinase	Recombinase
UHGV-0136898_50	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0136898_50	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0136898_50	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0136898_51	KOfam	K07273	acm; lysozyme	NA
UHGV-0136898_51	PHROG	phrog_291	endolysin	lysis
UHGV-0136898_51	UniRef90	UniRef90_A0A7U9QWG5	Autolytic lysozyme	NA
UHGV-0136898_51	eggNOG-mapper	97139.C824_02634	Glycosyl hydrolases family 25	NA
UHGV-0136898_51	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0136898_51	COG	COG1388	LysM repeat	NA
UHGV-0136898_51	Structural annotation	PF01183, PF01471, COG3757	NA	NA
UHGV-0136898_53	PHROG	phrog_17196	kinase	other
UHGV-0136898_53	UniRef90	UniRef90_A0A3R6GQJ1	Peptidase S74 domain-containing protein	NA
UHGV-0136898_53	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0136898_55	PHROG	phrog_18190	NA	unknown function
UHGV-0136898_55	UniRef90	UniRef90_UPI001D0767E1	gp58-like family protein	NA
UHGV-0136898_55	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0136898_55	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0136898_56	PHROG	phrog_1194	NA	unknown function
UHGV-0136898_56	Pfam	PF20458	NA	DUF6711
UHGV-0136898_56	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0136898_57	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0136898_57	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0136898_57	COG	COG5412	Phage-related protein	NA
UHGV-0136898_58	PHROG	phrog_706	NA	unknown function
UHGV-0136898_58	UniRef90	UniRef90_UPI001C0F2CC6	Gp15 family bacteriophage protein	NA
UHGV-0136898_58	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0136898_58	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0136898_58	Structural annotation	PF06854	NA	NA
UHGV-0136898_59	PHROG	phrog_11299	NA	unknown function
UHGV-0136898_59	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0136898_59	Structural annotation	PF10666	NA	NA
UHGV-0136898_60	PHROG	phrog_3099	NA	unknown function
UHGV-0136898_60	eggNOG-mapper	1304866.K413DRAFT_3043	NA	NA
UHGV-0136898_60	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0136898_61	PHROG	phrog_3266	tail completion	connector
UHGV-0136898_61	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0136898_61	Structural annotation	PF12691	NA	NA
UHGV-0136898_62	PHROG	phrog_3366	NA	unknown function
UHGV-0136898_62	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0136898_62	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0136898_63	PHROG	phrog_18218	NA	unknown function
UHGV-0136898_63	UniRef90	UniRef90_A0A3D0FFR6	Ribonuclease	NA
UHGV-0136898_63	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0136898_63	Structural annotation	PF06946	NA	NA
UHGV-0136898_64	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0136898_64	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-0136898_65	PHROG	phrog_544	major head protein	head and packaging
UHGV-0136898_65	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0136898_65	eggNOG-mapper	476272.RUMHYD_02854	NA	NA
UHGV-0136898_65	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0136898_66	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0136898_66	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0136898_66	eggNOG-mapper	411460.RUMTOR_02088	COG NOG36366 non supervised orthologous group	NA
UHGV-0136898_66	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0136898_66	Structural annotation	PF06810	NA	NA
UHGV-0136898_67	PHROG	phrog_28802	NA	unknown function
UHGV-0136898_67	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0136898_69	PHROG	phrog_16490	NA	unknown function
UHGV-0136898_69	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0136898_70	PHROG	phrog_22984	NA	unknown function
UHGV-0136898_71	PHROG	phrog_21718	NA	unknown function
UHGV-0136898_71	eggNOG-mapper	397290.C810_05210	NA	NA