UHGV-0136926

Genome information

Genome length 36,383 bps

CDS count 53

Completeness 93.96% (high-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136926
vOTU ID	vOTU-061386
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_376022
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.96% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	19
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.38
Jumbo phage	No

Genome content
Genome length	36,383 bps
GC content	59.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.22%
Average CDS length	644.32 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136926_1	KOfam	K14059	int; integrase	NA
UHGV-0136926_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0136926_1	UniRef90	UniRef90_UPI001C3991BB	Site-specific integrase	NA
UHGV-0136926_1	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0136926_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0136926_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0136926_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0136926_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0136926_2	PHROG	phrog_33872	NA	unknown function
UHGV-0136926_2	eggNOG-mapper	693746.OBV_19740	NA	NA
UHGV-0136926_3	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0136926_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0136926_3	UniRef90	UniRef90_UPI000D1E8240	helix-turn-helix domain-containing protein	NA
UHGV-0136926_3	eggNOG-mapper	1123302.KB904185_gene810	Helix-turn-helix domain	NA
UHGV-0136926_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0136926_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136926_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0136926_3	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0136926_5	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0136926_5	UniRef90	UniRef90_A0A1Y4L914	NA	NA
UHGV-0136926_5	eggNOG-mapper	1462526.BN990_01190	NA	NA
UHGV-0136926_5	Pfam	PF13643	NA	DUF4145
UHGV-0136926_5	Structural annotation	COG2250	NA	NA
UHGV-0136926_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0136926_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0136926_6	UniRef90	UniRef90_UPI000D1E4A22	helix-turn-helix domain-containing protein	NA
UHGV-0136926_6	eggNOG-mapper	1203602.HMPREF1527_01032	sequence-specific DNA binding	NA
UHGV-0136926_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0136926_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0136926_7	UniRef90	UniRef90_UPI000D1F26C7	helix-turn-helix domain-containing protein	NA
UHGV-0136926_7	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0136926_7	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0136926_7	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0136926_8	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0136926_8	UniRef90	UniRef90_UPI000D1DBD14	helix-turn-helix transcriptional regulator	NA
UHGV-0136926_8	eggNOG-mapper	1203606.HMPREF1526_00992	Helix-turn-helix XRE-family like proteins	NA
UHGV-0136926_8	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0136926_8	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0136926_8	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0136926_10	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0136926_10	UniRef90	UniRef90_H6LCD1	Bacteriophage-like protein	NA
UHGV-0136926_10	eggNOG-mapper	931626.Awo_c35220	DnaD domain protein	NA
UHGV-0136926_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0136926_10	Structural annotation	PF13463, TIGR01889, COG1846	NA	NA
UHGV-0136926_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0136926_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0136926_11	UniRef90	UniRef90_A0A1C6BCB2	DNA helicase	NA
UHGV-0136926_11	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0136926_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0136926_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0136926_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0136926_11	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0136926_12	KOfam	K03704	cspA; cold shock protein	NA
UHGV-0136926_12	PHROG	phrog_729	cold shock protein	other
UHGV-0136926_12	UniRef90	UniRef90_UPI000B3587A6	cold-shock protein	NA
UHGV-0136926_12	eggNOG-mapper	428125.CLOLEP_02766	Cold shock	NA
UHGV-0136926_12	Pfam	PF00313	'Cold-shock' DNA-binding domain	CSD
UHGV-0136926_12	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0136926_12	Structural annotation	PF00313, NF007062, COG1278	NA	NA
UHGV-0136926_13	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0136926_13	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0136926_13	UniRef90	UniRef90_A0A1C6BCT0	Sporulation initiation inhibitor protein soj	NA
UHGV-0136926_13	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0136926_13	Pfam	PF13614	AAA domain	AAA_31
UHGV-0136926_13	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0136926_13	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0136926_14	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0136926_14	PHROG	phrog_27290	NA	unknown function
UHGV-0136926_14	UniRef90	UniRef90_A0A1C6BCQ5	ParB/RepB/Spo0J family partition protein	NA
UHGV-0136926_14	eggNOG-mapper	1415774.U728_489	Belongs to the ParB family	NA
UHGV-0136926_14	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0136926_14	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0136926_14	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0136926_16	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0136926_16	UniRef90	UniRef90_A0A372V4B7	DNA cytosine methyltransferase	NA
UHGV-0136926_16	eggNOG-mapper	485918.Cpin_3834	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0136926_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0136926_16	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0136926_17	PHROG	phrog_8538	NA	unknown function
UHGV-0136926_17	eggNOG-mapper	1121121.KB894312_gene3170	NA	NA
UHGV-0136926_19	Structural annotation	PF06657	NA	NA
UHGV-0136926_20	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0136926_20	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0136926_20	Structural annotation	PF01446	NA	NA
UHGV-0136926_21	Structural annotation	PF14205	NA	NA
UHGV-0136926_22	Structural annotation	PF15188	NA	NA
UHGV-0136926_23	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0136926_23	UniRef90	UniRef90_A0A1C6BEA1	HNH endonuclease	NA
UHGV-0136926_23	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0136926_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0136926_23	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0136926_23	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0136926_24	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0136926_24	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0136926_24	UniRef90	UniRef90_UPI001C39D614	Site-specific DNA-methyltransferase	NA
UHGV-0136926_24	eggNOG-mapper	693746.OBV_19980	DNA methylase	NA
UHGV-0136926_24	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0136926_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0136926_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0136926_24	COG	COG0863	DNA modification methylase	NA
UHGV-0136926_24	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF008572, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0136926_25	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0136926_25	UniRef90	UniRef90_A0A1C6BE25	Phage terminase, small subunit	NA
UHGV-0136926_25	eggNOG-mapper	742738.HMPREF9460_00871	phage terminase, small subunit	NA
UHGV-0136926_25	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0136926_25	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0136926_25	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0136926_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0136926_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0136926_27	UniRef90	UniRef90_A0A1C6BE92	Phage terminase-like protein, large subunit	NA
UHGV-0136926_27	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0136926_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0136926_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0136926_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0136926_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0136926_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0136926_29	UniRef90	UniRef90_UPI00164A731A	phage portal protein	NA
UHGV-0136926_29	eggNOG-mapper	742738.HMPREF9460_00874	Phage portal protein	NA
UHGV-0136926_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0136926_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0136926_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0136926_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0136926_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0136926_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0136926_30	UniRef90	UniRef90_UPI00164BB38D	Clp protease ClpP	NA
UHGV-0136926_30	eggNOG-mapper	649639.Bcell_2731	Serine dehydrogenase proteinase	NA
UHGV-0136926_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0136926_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0136926_30	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0136926_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0136926_31	UniRef90	UniRef90_UPI00164C4915	phage major capsid protein	NA
UHGV-0136926_31	eggNOG-mapper	742738.HMPREF9460_00876	Phage capsid family	NA
UHGV-0136926_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0136926_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0136926_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0136926_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0136926_32	eggNOG-mapper	742738.HMPREF9460_00877	NA	NA
UHGV-0136926_32	Structural annotation	PF03898, NF033675	NA	NA
UHGV-0136926_33	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0136926_33	UniRef90	UniRef90_UPI000F63D879	head-tail connector protein	NA
UHGV-0136926_33	eggNOG-mapper	195103.CPF_1583	Phage gp6-like head-tail connector protein	NA
UHGV-0136926_33	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0136926_33	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0136926_34	PHROG	phrog_25	head closure Hc1	connector
UHGV-0136926_34	UniRef90	UniRef90_A0A1C6BEL8	Bacteriophage head-tail adaptor	NA
UHGV-0136926_34	eggNOG-mapper	97138.C820_00612	Phage head-tail adaptor	NA
UHGV-0136926_34	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0136926_34	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0136926_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0136926_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0136926_35	UniRef90	UniRef90_UPI00189BF3BE	HK97 gp10 family phage protein	NA
UHGV-0136926_35	eggNOG-mapper	394503.Ccel_2953	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0136926_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0136926_35	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0136926_36	PHROG	phrog_525	NA	unknown function
UHGV-0136926_36	Pfam	PF20765	NA	DUF6838
UHGV-0136926_36	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0136926_37	PHROG	phrog_1480	tail sheath	tail
UHGV-0136926_37	UniRef90	UniRef90_A0A1C6BF65	Phage tail sheath protein	NA
UHGV-0136926_37	eggNOG-mapper	1203606.HMPREF1526_01344	Phage tail sheath C-terminal domain	NA
UHGV-0136926_37	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0136926_37	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0136926_38	PHROG	phrog_365	tail protein	tail
UHGV-0136926_38	UniRef90	UniRef90_A0A1C6BEZ4	Phage-like element PBSX protein xkdM	NA
UHGV-0136926_38	eggNOG-mapper	318464.IO99_13720	Phage tail tube protein	NA
UHGV-0136926_38	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0136926_38	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0136926_39	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0136926_39	eggNOG-mapper	632245.CLP_2608	NA	NA
UHGV-0136926_39	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0136926_40	PHROG	phrog_23464	NA	unknown function
UHGV-0136926_40	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0136926_40	COG	COG5283	Phage-related tail protein	NA
UHGV-0136926_40	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0136926_42	PHROG	phrog_23201	NA	unknown function
UHGV-0136926_42	UniRef90	UniRef90_UPI000F05162E	phage portal protein	NA
UHGV-0136926_42	eggNOG-mapper	1120998.AUFC01000013_gene2949	LysM domain	NA
UHGV-0136926_42	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0136926_42	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0136926_43	PHROG	phrog_400	tail protein	tail
UHGV-0136926_43	UniRef90	UniRef90_A0A1C6BFH5	Peptidase C51 domain-containing protein	NA
UHGV-0136926_43	eggNOG-mapper	1203606.HMPREF1526_01350	Late control gene D protein	NA
UHGV-0136926_43	Pfam	PF05257	CHAP domain	CHAP
UHGV-0136926_43	COG	COG3500	NA	NA
UHGV-0136926_44	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0136926_45	UniRef90	UniRef90_A0A3E2XWS6	NA	NA
UHGV-0136926_45	eggNOG-mapper	1203606.HMPREF1526_01352	NA	NA
UHGV-0136926_45	Pfam	PF10934	NA	DUF2634
UHGV-0136926_45	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0136926_45	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0136926_46	PHROG	phrog_6	baseplate protein	tail
UHGV-0136926_46	UniRef90	UniRef90_UPI000F04B59B	baseplate J/gp47 family protein	NA
UHGV-0136926_46	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-0136926_46	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0136926_46	COG	COG3299	NA	NA
UHGV-0136926_46	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0136926_47	PHROG	phrog_521	tail protein	tail
UHGV-0136926_47	UniRef90	UniRef90_UPI0019D0D2FC	NA	NA
UHGV-0136926_47	eggNOG-mapper	1122919.KB905608_gene4453	NA	NA
UHGV-0136926_47	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0136926_47	COG	COG3778	NA	NA
UHGV-0136926_48	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0136926_48	eggNOG-mapper	439497.RR11_1937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0136926_48	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0136926_48	Structural annotation	PF12571, COG1262	NA	NA
UHGV-0136926_49	PHROG	phrog_22773	NA	unknown function
UHGV-0136926_49	UniRef90	UniRef90_A0A8J6JIT9	Toxin-antitoxin system toxin subunit	NA
UHGV-0136926_49	eggNOG-mapper	742738.HMPREF9460_02535	NA	NA
UHGV-0136926_50	UniRef90	UniRef90_A0A8J6JAX9	XkdX family protein	NA
UHGV-0136926_50	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0136926_50	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0136926_51	KOfam	K13277	epr; minor extracellular protease Epr [EC:3.4.21.-]	NA
UHGV-0136926_51	UniRef90	UniRef90_UPI00164A3975	S8 family serine peptidase	NA
UHGV-0136926_51	Pfam	PF00082	Subtilase family	Peptidase_S8
UHGV-0136926_51	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0136926_51	COG	COG1874	Beta-galactosidase GanA	NA
UHGV-0136926_51	Structural annotation	PF00395, TIGR03921, COG1404	NA	NA
UHGV-0136926_52	PHROG	phrog_4105	NA	unknown function
UHGV-0136926_52	eggNOG-mapper	718252.FP2_06480	NA	NA
UHGV-0136926_53	PHROG	phrog_263	holin	lysis
UHGV-0136926_53	UniRef90	UniRef90_UPI00164C919B	phage holin	NA
UHGV-0136926_53	eggNOG-mapper	1121344.JHZO01000003_gene952	SPP1 phage holin	NA
UHGV-0136926_53	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0136926_53	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0136926_53	Structural annotation	PF04688	NA	NA