UHGV-0136951

Genome information

Genome length 23,010 bps

CDS count 32

Completeness 52.51% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0136951
vOTU ID	vOTU-031558
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_370967
BioSample	SAMN03295830
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.51% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.13
Jumbo phage	No

Genome content
Genome length	23,010 bps
GC content	29.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	93.93%
Average CDS length	683.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0136951_2	PHROG	phrog_240	head protein	head and packaging
UHGV-0136951_2	eggNOG-mapper	1430331.EP10_10445	Belongs to the glycosyl hydrolase 8 (cellulase D) family	NA
UHGV-0136951_2	COG	COG3405	Endo-1,4-beta-D-glucanase Y	NA
UHGV-0136951_2	Structural annotation	PF12571	NA	NA
UHGV-0136951_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0136951_3	UniRef90	UniRef90_A0A1W1UYY4	Phage tail protein	NA
UHGV-0136951_3	eggNOG-mapper	1304880.JAGB01000002_gene2207	NA	NA
UHGV-0136951_3	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0136951_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0136951_3	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0136951_4	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0136951_4	UniRef90	UniRef90_A0A1W1UYV2	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0136951_4	eggNOG-mapper	1415774.U728_1244	tail tape measure protein	NA
UHGV-0136951_4	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0136951_4	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0136951_4	COG	COG5283	Phage-related tail protein	NA
UHGV-0136951_5	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0136951_5	Structural annotation	PF14205	NA	NA
UHGV-0136951_6	PHROG	phrog_706	NA	unknown function
UHGV-0136951_6	UniRef90	UniRef90_A0A1W1UZ04	Bacteriophage Gp15 protein	NA
UHGV-0136951_6	eggNOG-mapper	1321782.HMPREF1986_02275	Bacteriophage Gp15 protein	NA
UHGV-0136951_6	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0136951_7	eggNOG-mapper	536233.CLO_0892	NA	NA
UHGV-0136951_7	Pfam	PF20378	NA	DUF6673
UHGV-0136951_7	Structural annotation	PF10666	NA	NA
UHGV-0136951_8	PHROG	phrog_3099	NA	unknown function
UHGV-0136951_8	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0136951_8	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0136951_9	PHROG	phrog_3266	tail completion	connector
UHGV-0136951_9	UniRef90	UniRef90_A0A353JB81	Chloramphenicol resistance protein	NA
UHGV-0136951_9	eggNOG-mapper	525255.HMPREF0077_0380	NA	NA
UHGV-0136951_9	Structural annotation	PF12691	NA	NA
UHGV-0136951_10	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0136951_10	UniRef90	UniRef90_A0A1W1UZY2	Minor capsid protein	NA
UHGV-0136951_10	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-0136951_10	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0136951_10	Structural annotation	PF11114	NA	NA
UHGV-0136951_11	PHROG	phrog_3366	NA	unknown function
UHGV-0136951_11	eggNOG-mapper	642492.Clole_0823	NA	NA
UHGV-0136951_11	Pfam	PF20536	NA	DUF6751
UHGV-0136951_11	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0136951_12	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0136951_13	PHROG	phrog_247	major head protein	head and packaging
UHGV-0136951_13	UniRef90	UniRef90_A0A510K9Q4	Phage capsid protein	NA
UHGV-0136951_13	eggNOG-mapper	1121344.JHZO01000003_gene972	NA	NA
UHGV-0136951_13	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0136951_13	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0136951_14	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0136951_14	UniRef90	UniRef90_U7UI31	Phage minor structural protein GP20	NA
UHGV-0136951_14	eggNOG-mapper	1111134.HMPREF1253_1975	Phage minor structural protein GP20	NA
UHGV-0136951_14	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0136951_14	Structural annotation	PF06810	NA	NA
UHGV-0136951_16	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0136951_16	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0136951_16	UniRef90	UniRef90_A0A1W1V015	Phage minor capsid protein 2	NA
UHGV-0136951_16	eggNOG-mapper	525255.HMPREF0077_0390	Phage minor capsid protein 2	NA
UHGV-0136951_16	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0136951_16	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0136951_16	COG	COG2369	NA	NA
UHGV-0136951_16	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0136951_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0136951_18	UniRef90	UniRef90_A0A1W1UZ76	Phage portal protein, putative, A118 family	NA
UHGV-0136951_18	eggNOG-mapper	525255.HMPREF0077_0391	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0136951_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0136951_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0136951_19	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0136951_19	UniRef90	UniRef90_A0A1W1UZ20	Phage terminase, large subunit, PBSX family	NA
UHGV-0136951_19	eggNOG-mapper	525255.HMPREF0077_0392	Terminase-like family	NA
UHGV-0136951_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0136951_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0136951_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0136951_19	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0136951_20	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0136951_20	UniRef90	UniRef90_UPI001053EF06	phage terminase small subunit	NA
UHGV-0136951_20	eggNOG-mapper	293826.Amet_2580	DNA packaging	NA
UHGV-0136951_20	NCBIFam	NF041373.1	HGGxSTG domain-containing protein	NA
UHGV-0136951_20	COG	COG5484	NA	NA
UHGV-0136951_22	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0136951_22	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0136951_22	UniRef90	UniRef90_A0A1W1V085	dUTP pyrophosphatase	NA
UHGV-0136951_22	eggNOG-mapper	511680.BUTYVIB_00661	NA	NA
UHGV-0136951_22	Pfam	PF00692	dUTPase	dUTPase
UHGV-0136951_22	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0136951_22	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0136951_25	Structural annotation	PF18350, MF_01354, TIGR00739, COG2139	NA	NA
UHGV-0136951_26	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0136951_26	PHROG	phrog_5131	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0136951_26	UniRef90	UniRef90_UPI0011DD6C6F	thymidylate synthase	NA
UHGV-0136951_26	eggNOG-mapper	1408254.T458_24480	Thymidylate synthase	NA
UHGV-0136951_26	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0136951_26	COG	COG0207	Thymidylate synthase	NA
UHGV-0136951_26	Structural annotation	PF00303, MF_01686, TIGR03283, COG0207	NA	NA
UHGV-0136951_27	KOfam	K00568	ubiG; 2-polyprenyl-6-hydroxyphenyl methylase / 3-demethylubiquinone-9 3-methyltransferase [EC:2.1.1.222 2.1.1.64]	NA
UHGV-0136951_27	PHROG	phrog_4752	tRNA methyltransferase	other
UHGV-0136951_27	UniRef90	UniRef90_UPI0011DC7D29	class I SAM-dependent methyltransferase	NA
UHGV-0136951_27	eggNOG-mapper	1121342.AUCO01000021_gene1111	cyclopropane-fatty-acyl-phospholipid synthase	NA
UHGV-0136951_27	Pfam	PF13489	Methyltransferase domain	Methyltransf_23
UHGV-0136951_27	COG	COG2230	Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases	NA
UHGV-0136951_27	Structural annotation	PF03291, MF_02057, NF008264, COG2227	NA	NA
UHGV-0136951_28	COG	COG0125	Thymidylate kinase	NA
UHGV-0136951_28	Structural annotation	PF01712, MF_00109, NF010553, COG1428	NA	NA
UHGV-0136951_29	PHROG	phrog_1485	NA	unknown function
UHGV-0136951_29	UniRef90	UniRef90_UPI001C9E2793	nucleotide modification associated domain-containing protein	NA
UHGV-0136951_29	eggNOG-mapper	445335.CBN_1364	NA	NA
UHGV-0136951_29	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0136951_30	PHROG	phrog_16126	NA	unknown function
UHGV-0136951_31	UniRef90	UniRef90_A0A1W1UZL6	Transcriptional regulator	NA
UHGV-0136951_31	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0136951_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0136951_32	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0136951_32	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0136951_32	UniRef90	UniRef90_A0A1W1V0C0	Putative DNA primase/helicase	NA
UHGV-0136951_32	eggNOG-mapper	203119.Cthe_1734	Phage plasmid primase, P4 family	NA
UHGV-0136951_32	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0136951_32	Pfam	PF19263	NA	DUF5906
UHGV-0136951_32	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0136951_32	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0136951_32	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0136951_32	Structural annotation	PF05272, PF02257, PF08706, NF011296, COG3378	NA	NA