UHGV-0137030

Genome information

Genome length 31,531 bps

CDS count 46

Completeness 92.59% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0137030
vOTU ID	vOTU-070150
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_349398
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.59% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.34
Jumbo phage	No

Genome content
Genome length	31,531 bps
GC content	59.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	90.93%
Average CDS length	626.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0137030_3	PHROG	phrog_134	NA	unknown function
UHGV-0137030_3	eggNOG-mapper	1151292.QEW_0674	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0137030_3	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0137030_3	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0137030_4	PHROG	phrog_1863	NA	unknown function
UHGV-0137030_4	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0137030_5	PHROG	phrog_1129	holin	lysis
UHGV-0137030_5	UniRef90	UniRef90_A0A8D9PDD4	Holin	NA
UHGV-0137030_5	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0137030_5	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0137030_5	Structural annotation	PF06946	NA	NA
UHGV-0137030_6	PHROG	phrog_435	endolysin	lysis
UHGV-0137030_6	UniRef90	UniRef90_A0A8D9PDS4	Cell wall hydrolase/autolysin	NA
UHGV-0137030_6	eggNOG-mapper	1226322.HMPREF1545_01953	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0137030_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0137030_6	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0137030_7	KOfam	K14059	int; integrase	NA
UHGV-0137030_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0137030_7	UniRef90	UniRef90_UPI0013EF4EFD	site-specific integrase	NA
UHGV-0137030_7	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0137030_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0137030_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0137030_7	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0137030_8	PHROG	phrog_7115	NA	unknown function
UHGV-0137030_8	UniRef90	UniRef90_A0A316RLB8	Cytoplasmic protein	NA
UHGV-0137030_8	eggNOG-mapper	536233.CLO_1726	Bacterial PH domain	NA
UHGV-0137030_8	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0137030_8	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0137030_9	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0137030_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0137030_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0137030_9	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0137030_11	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-0137030_11	PHROG	phrog_8049	NA	unknown function
UHGV-0137030_11	eggNOG-mapper	927704.SELR_26510	NA	NA
UHGV-0137030_12	UniRef90	UniRef90_A0A1Y4C9D7	HTH cro/C1-type domain-containing protein	NA
UHGV-0137030_12	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0137030_13	Structural annotation	PF13601, TIGR04176	NA	NA
UHGV-0137030_14	UniRef90	UniRef90_A0A3A8W4L6	XRE family transcriptional regulator	NA
UHGV-0137030_14	eggNOG-mapper	1226322.HMPREF1545_00085	sequence-specific DNA binding	NA
UHGV-0137030_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0137030_14	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0137030_15	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0137030_15	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0137030_15	UniRef90	UniRef90_UPI000F0D19B9	helix-turn-helix domain-containing protein	NA
UHGV-0137030_15	eggNOG-mapper	1384066.JAGT01000001_gene1702	Helix-turn-helix XRE-family like proteins	NA
UHGV-0137030_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0137030_15	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0137030_15	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0137030_16	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0137030_16	UniRef90	UniRef90_G9YL68	DNA-binding helix-turn-helix protein	NA
UHGV-0137030_16	eggNOG-mapper	742738.HMPREF9460_00847	Helix-turn-helix XRE-family like proteins	NA
UHGV-0137030_16	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0137030_16	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0137030_16	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0137030_18	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0137030_18	UniRef90	UniRef90_UPI001F3D92C2	helix-turn-helix domain-containing protein	NA
UHGV-0137030_18	eggNOG-mapper	742738.HMPREF9460_00851	Helix-turn-helix domain	NA
UHGV-0137030_18	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0137030_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0137030_18	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0137030_19	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0137030_19	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0137030_19	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0137030_19	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0137030_19	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0137030_19	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0137030_19	COG	COG0305	Replicative DNA helicase	NA
UHGV-0137030_19	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0137030_20	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0137030_20	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0137030_20	UniRef90	UniRef90_UPI000318E277	ParA family protein	NA
UHGV-0137030_20	eggNOG-mapper	1007096.BAGW01000033_gene1614	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0137030_20	Pfam	PF13614	AAA domain	AAA_31
UHGV-0137030_20	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0137030_20	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0137030_21	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0137030_21	PHROG	phrog_27290	NA	unknown function
UHGV-0137030_21	UniRef90	UniRef90_UPI0003130F10	ParB N-terminal domain-containing protein	NA
UHGV-0137030_21	eggNOG-mapper	1007096.BAGW01000033_gene1613	ParB-like nuclease domain	NA
UHGV-0137030_21	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0137030_21	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0137030_21	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0137030_24	PHROG	phrog_38832	NA	unknown function
UHGV-0137030_24	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0137030_29	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0137030_29	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0137030_29	Structural annotation	PF21578	NA	NA
UHGV-0137030_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0137030_30	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0137030_30	eggNOG-mapper	86416.Clopa_0335	HNH nucleases	NA
UHGV-0137030_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0137030_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0137030_31	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0137030_31	UniRef90	UniRef90_UPI00195E8788	P27 family phage terminase small subunit	NA
UHGV-0137030_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0137030_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0137030_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0137030_32	UniRef90	UniRef90_A0A6I7GGF0	Terminase	NA
UHGV-0137030_32	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0137030_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0137030_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0137030_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0137030_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0137030_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0137030_33	UniRef90	UniRef90_G9YSB8	Phage portal protein, HK97 family	NA
UHGV-0137030_33	eggNOG-mapper	349161.Dred_2606	Phage portal protein, HK97 family	NA
UHGV-0137030_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0137030_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0137030_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0137030_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0137030_34	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0137030_34	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0137030_34	UniRef90	UniRef90_A0A1Y4BT12	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0137030_34	eggNOG-mapper	349161.Dred_2605	Belongs to the peptidase S14 family	NA
UHGV-0137030_34	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0137030_34	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0137030_34	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0137030_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0137030_35	UniRef90	UniRef90_G9YSC0	Cadherin-like domain-containing protein	NA
UHGV-0137030_35	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0137030_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0137030_35	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0137030_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0137030_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0137030_35	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0137030_36	PHROG	phrog_749	NA	unknown function
UHGV-0137030_36	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0137030_37	PHROG	phrog_19734	NA	unknown function
UHGV-0137030_37	UniRef90	UniRef90_A0A6I7GNS7	Phage head closure protein	NA
UHGV-0137030_37	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0137030_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0137030_38	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-0137030_38	Structural annotation	PF05657	NA	NA
UHGV-0137030_39	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0137030_39	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0137030_39	Structural annotation	TIGR01725	NA	NA
UHGV-0137030_40	PHROG	phrog_88	major tail protein	tail
UHGV-0137030_40	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0137030_40	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0137030_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0137030_40	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0137030_43	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0137030_43	UniRef90	UniRef90_A0A7X8M4B4	Phage tail protein (Fragment)	NA
UHGV-0137030_43	eggNOG-mapper	1216932.CM240_0625	tape measure	NA
UHGV-0137030_43	COG	COG5283	Phage-related tail protein	NA
UHGV-0137030_43	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0137030_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0137030_44	UniRef90	UniRef90_A0A173Z1X4	Phage-related protein	NA
UHGV-0137030_44	eggNOG-mapper	585198.HMPREF0574_0620	phage tail	NA
UHGV-0137030_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0137030_44	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0137030_45	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0137030_45	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-0137030_45	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0137030_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0137030_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0137030_45	COG	COG4926	Phage-related protein	NA
UHGV-0137030_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0137030_46	KOfam	K08135	COL15A; collagen type XV alpha	NA
UHGV-0137030_46	PHROG	phrog_819	tail protein	tail
UHGV-0137030_46	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0137030_46	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen