UHGV-0137035

Genome information

Genome length 16,517 bps

CDS count 21

Completeness 78.35% (medium-quality)

geNomad score 0.9700

Prediction confidence Confident

Genome information
Genome ID	UHGV-0137035
vOTU ID	vOTU-025053
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_379298
BioSample	SAMN03922517
Country	Germany
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9700
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.74
Jumbo phage	No

Genome content
Genome length	16,517 bps
GC content	38.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	93.75%
Average CDS length	739.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0137035_4	KOfam	K05636	LAMB1; laminin, beta 1	NA
UHGV-0137035_4	PHROG	phrog_13481	tail fiber protein	tail
UHGV-0137035_4	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0137035_5	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0137035_6	PHROG	phrog_2038	upper collar connector	connector
UHGV-0137035_6	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0137035_6	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0137035_6	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0137035_7	PHROG	phrog_2248	tail protein	tail
UHGV-0137035_7	UniRef90	UniRef90_A0A2V2GER8	Caud_tail_N domain-containing protein	NA
UHGV-0137035_7	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0137035_7	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0137035_7	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0137035_7	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0137035_8	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0137035_8	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0137035_8	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0137035_8	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0137035_10	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0137035_10	PHROG	phrog_894	endolysin	lysis
UHGV-0137035_10	UniRef90	UniRef90_A0A173V2T3	Peptidase M15	NA
UHGV-0137035_10	eggNOG-mapper	293826.Amet_2139	Peptidase M15A	NA
UHGV-0137035_10	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0137035_10	COG	COG3108	NA	NA
UHGV-0137035_10	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0137035_11	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0137035_11	PHROG	phrog_894	endolysin	lysis
UHGV-0137035_11	UniRef90	UniRef90_A0A1W1ZQE5	S-layer homology domain-containing protein	NA
UHGV-0137035_11	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0137035_11	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0137035_11	COG	COG3108	NA	NA
UHGV-0137035_11	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0137035_13	PHROG	phrog_2150	terminase	head and packaging
UHGV-0137035_13	UniRef90	UniRef90_A0A843HWD4	Phage DNA encapsidation protein	NA
UHGV-0137035_13	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0137035_13	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0137035_13	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0137035_14	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0137035_14	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0137035_14	UniRef90	UniRef90_A0A355RJ67	DNA-directed DNA polymerase	NA
UHGV-0137035_14	eggNOG-mapper	10756.DPOL_BPPH2	DNA polymerase type B, organellar and viral	NA
UHGV-0137035_14	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0137035_14	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0137035_15	Structural annotation	PF05435	NA	NA
UHGV-0137035_16	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0137035_16	UniRef90	UniRef90_A0A345BNN7	Single-stranded DNA-binding protein	NA
UHGV-0137035_16	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0137035_16	Structural annotation	PF17427	NA	NA
UHGV-0137035_19	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0137035_19	UniRef90	UniRef90_A0A417J5P5	NA	NA
UHGV-0137035_19	eggNOG-mapper	97138.C820_00250	NA	NA
UHGV-0137035_19	Pfam	PF14359	NA	DUF4406
UHGV-0137035_19	Structural annotation	PF14359, COG3613	NA	NA