UHGV-0137104

Genome information

Genome length 28,554 bps

CDS count 45

Completeness 53.21% (medium-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0137104
vOTU ID	vOTU-042442
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_392131
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.85
Jumbo phage	No

Genome content
Genome length	28,554 bps
GC content	38.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	96.64%
Average CDS length	615.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0137104_1	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0137104_1	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0137104_1	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0137104_1	Structural annotation	PF05772	NA	NA
UHGV-0137104_2	PHROG	phrog_7566	NA	unknown function
UHGV-0137104_2	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0137104_2	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-0137104_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0137104_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0137104_4	UniRef90	UniRef90_R6M3F2	Single-stranded DNA-binding protein	NA
UHGV-0137104_4	eggNOG-mapper	588581.Cpap_1479	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0137104_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0137104_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0137104_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0137104_4	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0137104_4	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0137104_5	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0137104_5	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0137104_5	UniRef90	UniRef90_UPI00137AD09D	NA	NA
UHGV-0137104_5	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-0137104_5	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0137104_5	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0137104_5	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0137104_5	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0137104_5	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0137104_6	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0137104_6	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0137104_6	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0137104_7	PHROG	phrog_4400	NA	unknown function
UHGV-0137104_7	eggNOG-mapper	357809.Cphy_2990	NA	NA
UHGV-0137104_7	dbAPIS	APIS008	Alphafold2 predicted that Gad2 is an enzyme with a nucleotidyltransferase protein domain, suggesting that it inhibits Gabija via a mechanism of action different than Gad1.	NA
UHGV-0137104_7	Structural annotation	PF01743, MF_00957, NF008634, COG0617	NA	NA
UHGV-0137104_8	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0137104_8	PHROG	phrog_37855	NA	unknown function
UHGV-0137104_8	UniRef90	UniRef90_R6PWI3	Spo0A_C domain-containing protein	NA
UHGV-0137104_8	eggNOG-mapper	1232447.BAHW02000023_gene1502	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0137104_8	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0137104_8	COG	COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	NA
UHGV-0137104_8	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0137104_11	UniRef90	UniRef90_A0A1Y4GWM6	J domain-containing protein	NA
UHGV-0137104_11	eggNOG-mapper	665956.HMPREF1032_03092	Heat shock protein DnaJ domain protein	NA
UHGV-0137104_11	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0137104_11	Structural annotation	PF00226	NA	NA
UHGV-0137104_12	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0137104_12	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0137104_12	UniRef90	UniRef90_A0A1C5STJ7	MazG domain-containing protein	NA
UHGV-0137104_12	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0137104_12	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0137104_12	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0137104_12	Structural annotation	NF007260	NA	NA
UHGV-0137104_13	PHROG	phrog_419	NA	unknown function
UHGV-0137104_13	UniRef90	UniRef90_A0A060QMU0	NA	NA
UHGV-0137104_13	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-0137104_13	Structural annotation	PF14083	NA	NA
UHGV-0137104_14	PHROG	phrog_6802	NA	unknown function
UHGV-0137104_14	eggNOG-mapper	1256908.HMPREF0373_03028	NA	NA
UHGV-0137104_15	PHROG	phrog_8684	NA	unknown function
UHGV-0137104_15	UniRef90	UniRef90_A0A1C5RI52	YopX protein	NA
UHGV-0137104_15	eggNOG-mapper	1234679.BN424_2637	YopX protein	NA
UHGV-0137104_15	Pfam	PF09643	YopX protein	YopX
UHGV-0137104_15	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0137104_15	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0137104_20	Structural annotation	PF02796, COG2771	NA	NA
UHGV-0137104_23	eggNOG-mapper	1095750.HMPREF9970_2261	NA	NA
UHGV-0137104_23	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0137104_23	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0137104_26	eggNOG-mapper	1449126.JQKL01000046_gene2071	NA	NA
UHGV-0137104_26	Structural annotation	PF06056, COG2963	NA	NA
UHGV-0137104_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0137104_27	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0137104_27	UniRef90	UniRef90_A0A355JD48	Terminase_3 domain-containing protein	NA
UHGV-0137104_27	eggNOG-mapper	693746.OBV_01690	phage Terminase large subunit	NA
UHGV-0137104_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0137104_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0137104_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0137104_28	UniRef90	UniRef90_A0A7X6VKT0	C2H2-type domain-containing protein	NA
UHGV-0137104_28	Structural annotation	PF21169	NA	NA
UHGV-0137104_30	PHROG	phrog_156	portal protein	head and packaging
UHGV-0137104_30	eggNOG-mapper	588581.Cpap_1526	NA	NA
UHGV-0137104_30	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0137104_32	PHROG	phrog_14242	major head protein	head and packaging
UHGV-0137104_32	UniRef90	UniRef90_A0A355JD53	Phage major capsid protein	NA
UHGV-0137104_32	eggNOG-mapper	588581.Cpap_1528	NA	NA
UHGV-0137104_32	NCBIFam	NF033394.1	phage major capsid protein	NA
UHGV-0137104_32	Structural annotation	PF17236, MF_04133, NF033394, COG4653	NA	NA
UHGV-0137104_34	Structural annotation	PF20387	NA	NA
UHGV-0137104_35	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0137104_35	eggNOG-mapper	1449126.JQKL01000002_gene1688	NA	NA
UHGV-0137104_38	Structural annotation	PF09144, NF038393	NA	NA
UHGV-0137104_40	PHROG	phrog_21765	NA	unknown function
UHGV-0137104_40	UniRef90	UniRef90_A0A1C6CU08	Pectate_lyase_3 domain-containing protein	NA
UHGV-0137104_40	eggNOG-mapper	1121286.AUMT01000001_gene63	NA	NA
UHGV-0137104_40	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-0137104_42	PHROG	phrog_2310	NA	unknown function
UHGV-0137104_42	eggNOG-mapper	931626.Awo_c34950	NA	NA
UHGV-0137104_44	PHROG	phrog_819	tail protein	tail
UHGV-0137104_44	eggNOG-mapper	1536769.P40081_01140	NA	NA
UHGV-0137104_44	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0137104_45	UniRef90	UniRef90_R6NA79	Toxin secretion/phage lysis holin	NA
UHGV-0137104_45	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0137104_45	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0137104_45	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0137104_45	COG	COG4824	Phage-related holin (Lysis protein)	NA