UHGV-0137107

Genome information

Genome length 43,739 bps

CDS count 56

Completeness 99.90% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0137107
vOTU ID	vOTU-069295
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_370153
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.28
Jumbo phage	No

Genome content
Genome length	43,739 bps
GC content	41.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.68%
Average CDS length	736.66 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0137107_1	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-0137107_1	PHROG	phrog_7507	NA	unknown function
UHGV-0137107_1	UniRef90	UniRef90_A0A6F8TA72	AAA_15 domain-containing protein	NA
UHGV-0137107_1	eggNOG-mapper	927658.AJUM01000021_gene962	AAA ATPase domain	NA
UHGV-0137107_1	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-0137107_1	COG	COG3593	Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains	NA
UHGV-0137107_2	KOfam	K14059	int; integrase	NA
UHGV-0137107_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0137107_2	UniRef90	UniRef90_A0A496PAJ5	Site-specific integrase	NA
UHGV-0137107_2	eggNOG-mapper	1401067.HMPREF0872_03560	Belongs to the 'phage' integrase family	NA
UHGV-0137107_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0137107_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0137107_2	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0137107_3	eggNOG-mapper	742743.HMPREF9453_01874	NA	NA
UHGV-0137107_4	PHROG	phrog_20936	NA	unknown function
UHGV-0137107_4	UniRef90	UniRef90_A0A134BXK6	Peptidase_M78 domain-containing protein	NA
UHGV-0137107_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0137107_4	Structural annotation	PF06114	NA	NA
UHGV-0137107_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0137107_5	UniRef90	UniRef90_C4FP68	Putative toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0137107_5	eggNOG-mapper	546273.VEIDISOL_00692	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0137107_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0137107_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0137107_5	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0137107_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0137107_6	UniRef90	UniRef90_C4FP69	DNA-binding helix-turn-helix protein	NA
UHGV-0137107_6	eggNOG-mapper	546273.VEIDISOL_00693	Helix-turn-helix XRE-family like proteins	NA
UHGV-0137107_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0137107_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0137107_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0137107_7	PHROG	phrog_6058	NA	unknown function
UHGV-0137107_7	Structural annotation	PF09035, NF033787	NA	NA
UHGV-0137107_8	PHROG	phrog_31038	NA	unknown function
UHGV-0137107_9	PHROG	phrog_29542	NA	unknown function
UHGV-0137107_10	PHROG	phrog_30876	NA	unknown function
UHGV-0137107_10	UniRef90	UniRef90_F5KZK9	Conserved domain protein	NA
UHGV-0137107_13	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0137107_13	UniRef90	UniRef90_UPI000F8EBC86	NA	NA
UHGV-0137107_13	eggNOG-mapper	546273.VEIDISOL_00698	NA	NA
UHGV-0137107_13	Pfam	PF10926	NA	DUF2800
UHGV-0137107_13	COG	COG2887	RecB family exonuclease	NA
UHGV-0137107_13	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0137107_15	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0137107_15	UniRef90	UniRef90_UPI001F0CBF89	NA	NA
UHGV-0137107_15	eggNOG-mapper	546273.VEIDISOL_00700	NA	NA
UHGV-0137107_15	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0137107_15	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0137107_16	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0137107_16	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0137107_16	UniRef90	UniRef90_A0A3A6W420	POLAc domain-containing protein	NA
UHGV-0137107_16	eggNOG-mapper	546273.VEIDISOL_00701	DNA polymerase	NA
UHGV-0137107_16	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0137107_16	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0137107_16	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0137107_18	PHROG	phrog_16315	NA	unknown function
UHGV-0137107_18	UniRef90	UniRef90_UPI000F8DF173	PcfJ domain-containing protein	NA
UHGV-0137107_18	eggNOG-mapper	546273.VEIDISOL_00703	PcfJ-like protein	NA
UHGV-0137107_18	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0137107_18	Structural annotation	PF14284	NA	NA
UHGV-0137107_19	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0137107_19	UniRef90	UniRef90_UPI000F8E83D0	virulence-associated E family protein	NA
UHGV-0137107_19	eggNOG-mapper	546273.VEIDISOL_00704	Virulence-associated protein E	NA
UHGV-0137107_19	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0137107_19	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0137107_19	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-0137107_20	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0137107_20	UniRef90	UniRef90_A0A413EEJ0	VRR-NUC domain-containing protein	NA
UHGV-0137107_20	eggNOG-mapper	546273.VEIDISOL_00705	VRR_NUC	NA
UHGV-0137107_20	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0137107_20	Structural annotation	PF01870, MF_01490, NF041423, COG1591	NA	NA
UHGV-0137107_21	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0137107_21	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0137107_21	UniRef90	UniRef90_A0A6N2ZEW6	Helicase ATP-binding domain-containing protein	NA
UHGV-0137107_21	eggNOG-mapper	546273.VEIDISOL_00706	SNF2 family	NA
UHGV-0137107_21	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0137107_21	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0137107_21	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0137107_21	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0137107_21	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0137107_23	PHROG	phrog_918	NA	unknown function
UHGV-0137107_23	UniRef90	UniRef90_UPI001D064E70	NA	NA
UHGV-0137107_23	eggNOG-mapper	1401067.HMPREF0872_03440	NA	NA
UHGV-0137107_23	Pfam	PF19791	NA	DUF6275
UHGV-0137107_24	PHROG	phrog_236	nucleotide kinase	other
UHGV-0137107_24	UniRef90	UniRef90_UPI001D0A2658	NA	NA
UHGV-0137107_24	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0137107_24	Pfam	PF11753	NA	DUF3310
UHGV-0137107_24	Structural annotation	PF11753	NA	NA
UHGV-0137107_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0137107_25	UniRef90	UniRef90_UPI0013DFE289	NA	NA
UHGV-0137107_25	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-0137107_25	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0137107_26	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0137107_26	eggNOG-mapper	1128111.HMPREF0870_01772	transposase activity	NA
UHGV-0137107_26	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0137107_27	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0137107_27	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0137107_27	UniRef90	UniRef90_A0A2S7YYZ0	Terminase	NA
UHGV-0137107_27	eggNOG-mapper	1128111.HMPREF0870_01771	Phage terminase large subunit (GpA)	NA
UHGV-0137107_27	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0137107_27	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0137107_27	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0137107_27	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0137107_27	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0137107_28	PHROG	phrog_20307	NA	unknown function
UHGV-0137107_28	UniRef90	UniRef90_F5KZM7	Conserved domain protein	NA
UHGV-0137107_28	Structural annotation	PF19645, COG1382	NA	NA
UHGV-0137107_29	PHROG	phrog_21	portal protein	head and packaging
UHGV-0137107_29	UniRef90	UniRef90_A0A2S7YZ05	Phage portal protein	NA
UHGV-0137107_29	eggNOG-mapper	1128111.HMPREF0870_01769	Phage portal protein, lambda family	NA
UHGV-0137107_29	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0137107_29	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0137107_29	COG	COG5511	Phage capsid protein	NA
UHGV-0137107_29	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0137107_30	KOfam	K06904	NA	NA
UHGV-0137107_30	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0137107_30	UniRef90	UniRef90_A0A2S7YZ16	Peptidase	NA
UHGV-0137107_30	eggNOG-mapper	1128111.HMPREF0870_01768	Caudovirus prohead protease	NA
UHGV-0137107_30	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0137107_30	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0137107_30	COG	COG3087	Cell division protein FtsN	NA
UHGV-0137107_30	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0137107_31	PHROG	phrog_122	head decoration	head and packaging
UHGV-0137107_31	UniRef90	UniRef90_A0A4Q9TLG5	NA	NA
UHGV-0137107_31	eggNOG-mapper	1235835.C814_03476	NA	NA
UHGV-0137107_31	Pfam	PF09956	NA	DUF2190
UHGV-0137107_31	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0137107_31	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0137107_32	PHROG	phrog_27032	NA	unknown function
UHGV-0137107_32	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0137107_33	PHROG	phrog_222	tail protein	tail
UHGV-0137107_33	UniRef90	UniRef90_F5KZN2	Conserved domain protein	NA
UHGV-0137107_33	eggNOG-mapper	1128111.HMPREF0870_01765	NA	NA
UHGV-0137107_33	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0137107_34	PHROG	phrog_17431	NA	unknown function
UHGV-0137107_34	eggNOG-mapper	1128111.HMPREF0870_01764	NA	NA
UHGV-0137107_34	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0137107_35	PHROG	phrog_290	minor tail protein	tail
UHGV-0137107_35	UniRef90	UniRef90_UPI001E4C5382	phage tail tube protein	NA
UHGV-0137107_35	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-0137107_35	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0137107_35	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0137107_36	PHROG	phrog_27248	NA	unknown function
UHGV-0137107_37	PHROG	phrog_23549	NA	unknown function
UHGV-0137107_37	UniRef90	UniRef90_F5KZN6	Conserved domain protein	NA
UHGV-0137107_38	PHROG	phrog_22443	NA	unknown function
UHGV-0137107_38	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-0137107_38	COG	COG4913	NA	NA
UHGV-0137107_39	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0137107_39	PHROG	phrog_22443	NA	unknown function
UHGV-0137107_39	UniRef90	UniRef90_F5KZN7	Phage tail tape measure protein, lambda family	NA
UHGV-0137107_39	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-0137107_39	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0137107_39	COG	COG4913	NA	NA
UHGV-0137107_40	eggNOG-mapper	1009370.ALO_04658	NA	NA
UHGV-0137107_40	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0137107_41	PHROG	phrog_18	minor tail protein	tail
UHGV-0137107_41	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0137107_41	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0137107_41	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0137107_41	COG	COG4672	Phage tail protein	NA
UHGV-0137107_41	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0137107_42	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0137107_42	PHROG	phrog_329	minor tail protein	tail
UHGV-0137107_42	UniRef90	UniRef90_UPI00068174D5	NlpC/P60 family protein	NA
UHGV-0137107_42	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0137107_42	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0137107_42	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0137107_42	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0137107_43	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0137107_43	UniRef90	UniRef90_F5KZP0	Fibronectin type III domain protein	NA
UHGV-0137107_43	eggNOG-mapper	1128111.HMPREF0870_01756	gp58-like protein	NA
UHGV-0137107_43	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0137107_43	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0137107_43	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0137107_43	COG	COG1511	NA	NA
UHGV-0137107_43	Structural annotation	PF13550, PF00041, PF09294, PF17936, PF14109, NF040662, NF041335, COG4733	NA	NA
UHGV-0137107_44	PHROG	phrog_2427	NA	unknown function
UHGV-0137107_45	PHROG	phrog_25213	NA	unknown function
UHGV-0137107_46	PHROG	phrog_1084	NA	unknown function
UHGV-0137107_46	Structural annotation	PF17813, NF038186	NA	NA
UHGV-0137107_47	PHROG	phrog_22483	NA	unknown function
UHGV-0137107_47	UniRef90	UniRef90_A0A563DAK6	Lysyl-tRNA synthetase	NA
UHGV-0137107_47	eggNOG-mapper	706434.HMPREF9429_00509	NA	NA
UHGV-0137107_47	Structural annotation	PF17936, NF033814	NA	NA
UHGV-0137107_49	PHROG	phrog_27828	NA	unknown function
UHGV-0137107_49	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0137107_49	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0137107_50	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0137107_50	PHROG	phrog_435	endolysin	lysis
UHGV-0137107_50	UniRef90	UniRef90_A0A6N3A5B7	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-0137107_50	eggNOG-mapper	546273.VEIDISOL_00739	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0137107_50	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0137107_50	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0137107_50	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0137107_53	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-0137107_53	PHROG	phrog_7507	NA	unknown function
UHGV-0137107_53	UniRef90	UniRef90_A0A3E2XVQ6	AAA_15 domain-containing protein	NA
UHGV-0137107_53	eggNOG-mapper	927658.AJUM01000021_gene962	AAA ATPase domain	NA
UHGV-0137107_53	PADLOC	Old	Old	Abi
UHGV-0137107_53	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-0137107_53	Pfam	PF20469	Overcoming lysogenization defect protein-like, TOPRIM domain	OLD-like_TOPRIM
UHGV-0137107_53	COG	COG3593	Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains	NA
UHGV-0137107_54	eggNOG-mapper	479436.Vpar_0186	NA	NA
UHGV-0137107_55	UniRef90	UniRef90_W1UX87	Translation elongation factor Tu	NA
UHGV-0137107_55	eggNOG-mapper	479436.Vpar_0189	NA	NA
UHGV-0137107_56	UniRef90	UniRef90_A0A840TQK9	NA	NA
UHGV-0137107_56	eggNOG-mapper	479436.Vpar_0190	NA	NA