UHGV-0137207

Genome information

Genome length 43,945 bps

CDS count 60

Completeness 99.90% (high-quality)

geNomad score 0.9817

Prediction confidence Confident

Genome information
Genome ID	UHGV-0137207
vOTU ID	vOTU-011515
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_387605
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9817
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.85
Jumbo phage	No

Genome content
Genome length	43,945 bps
GC content	57.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	92.72%
Average CDS length	682.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0137207_1	UniRef90	UniRef90_UPI0012AD39DD	leucine-rich repeat protein	NA
UHGV-0137207_1	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0137207_4	PHROG	phrog_38832	NA	unknown function
UHGV-0137207_4	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0137207_4	Structural annotation	PF11717	NA	NA
UHGV-0137207_5	PHROG	phrog_3136	NA	unknown function
UHGV-0137207_5	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0137207_5	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0137207_5	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0137207_5	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0137207_6	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0137207_8	eggNOG-mapper	445972.ANACOL_00168	NA	NA
UHGV-0137207_10	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0137207_10	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0137207_10	eggNOG-mapper	1105031.HMPREF1141_0597	DNA-packaging protein gp3	NA
UHGV-0137207_10	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0137207_10	Structural annotation	PF16677	NA	NA
UHGV-0137207_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0137207_11	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0137207_11	UniRef90	UniRef90_A0A1Y4WJ48	Terminase-like family protein	NA
UHGV-0137207_11	eggNOG-mapper	748224.HMPREF9436_01395	Terminase-like family	NA
UHGV-0137207_11	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0137207_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0137207_11	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0137207_12	PHROG	phrog_156	portal protein	head and packaging
UHGV-0137207_12	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0137207_12	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0137207_12	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0137207_13	Structural annotation	NF011128, COG2868	NA	NA
UHGV-0137207_14	PHROG	phrog_13908	NA	unknown function
UHGV-0137207_14	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0137207_15	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0137207_15	UniRef90	UniRef90_A0A8D9UH64	Major capsid protein	NA
UHGV-0137207_15	eggNOG-mapper	1449126.JQKL01000003_gene1695	NA	NA
UHGV-0137207_15	Pfam	PF13252	NA	DUF4043
UHGV-0137207_15	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0137207_15	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0137207_16	PHROG	phrog_15239	NA	unknown function
UHGV-0137207_16	eggNOG-mapper	1449126.JQKL01000003_gene1694	NA	NA
UHGV-0137207_17	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0137207_17	PHROG	phrog_6320	tail fiber protein	tail
UHGV-0137207_17	UniRef90	UniRef90_UPI00068BE71D	collagen-like protein	NA
UHGV-0137207_17	eggNOG-mapper	1519439.JPJG01000060_gene1892	Collagen triple helix repeat (20 copies)	NA
UHGV-0137207_17	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0137207_17	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0137207_17	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0137207_18	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0137207_18	UniRef90	UniRef90_A0A3D4D8F0	NA	NA
UHGV-0137207_18	eggNOG-mapper	1121334.KB911071_gene1970	NA	NA
UHGV-0137207_18	Pfam	PF19789	NA	DUF6273
UHGV-0137207_18	Structural annotation	PF19789	NA	NA
UHGV-0137207_19	PHROG	phrog_27545	NA	unknown function
UHGV-0137207_19	UniRef90	UniRef90_A0A2V2GQB6	Chitin-binding type-3 domain-containing protein	NA
UHGV-0137207_19	eggNOG-mapper	1519439.JPJG01000060_gene1895	NA	NA
UHGV-0137207_19	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0137207_19	Structural annotation	PF16170	NA	NA
UHGV-0137207_20	PHROG	phrog_12105	NA	unknown function
UHGV-0137207_20	eggNOG-mapper	1519439.JPJG01000060_gene1891	NA	NA
UHGV-0137207_21	eggNOG-mapper	1226322.HMPREF1545_00783	Chaperone of endosialidase	NA
UHGV-0137207_21	Structural annotation	PF07902, NF041249	NA	NA
UHGV-0137207_22	Structural annotation	PF18707, NF041740, COG5501	NA	NA
UHGV-0137207_24	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-0137207_24	eggNOG-mapper	1226322.HMPREF1545_00785	NA	NA
UHGV-0137207_24	Structural annotation	PF11134, TIGR03300, NF038126, COG1520	NA	NA
UHGV-0137207_25	eggNOG-mapper	1203606.HMPREF1526_02741	NA	NA
UHGV-0137207_26	PHROG	phrog_22978	NA	unknown function
UHGV-0137207_26	UniRef90	UniRef90_A0A3D4D8G0	PBECR5 domain-containing protein	NA
UHGV-0137207_26	eggNOG-mapper	1519439.JPJG01000060_gene1905	NA	NA
UHGV-0137207_26	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0137207_27	PHROG	phrog_937	hemolysin	other
UHGV-0137207_27	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0137207_29	PHROG	phrog_13256	NA	unknown function
UHGV-0137207_29	eggNOG-mapper	1519439.JPJG01000060_gene1898	NA	NA
UHGV-0137207_30	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0137207_30	PHROG	phrog_670	endolysin	lysis
UHGV-0137207_30	UniRef90	UniRef90_A0A3D4D877	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0137207_30	eggNOG-mapper	1519439.JPJG01000060_gene1899	Ami_2	NA
UHGV-0137207_30	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0137207_30	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0137207_30	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0137207_31	UniRef90	UniRef90_A0A8D9PDQ3	ECF sigma factor	NA
UHGV-0137207_31	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0137207_31	Structural annotation	PF04545, MF_00674, NF009179, COG1342	NA	NA
UHGV-0137207_34	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0137207_37	KOfam	K14059	int; integrase	NA
UHGV-0137207_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0137207_37	UniRef90	UniRef90_G4L0W3	Tyr recombinase domain-containing protein	NA
UHGV-0137207_37	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0137207_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0137207_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0137207_37	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0137207_38	UniRef90	UniRef90_R5HRH2	DNA-binding helix-turn-helix protein	NA
UHGV-0137207_38	eggNOG-mapper	537007.BLAHAN_06565	sequence-specific DNA binding	NA
UHGV-0137207_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0137207_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0137207_38	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0137207_39	UniRef90	UniRef90_UPI001BB4762F	DnaJ domain-containing protein	NA
UHGV-0137207_39	eggNOG-mapper	715451.ambt_14505	NA	NA
UHGV-0137207_40	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0137207_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0137207_40	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-0137207_40	eggNOG-mapper	665956.HMPREF1032_02614	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0137207_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0137207_40	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0137207_41	UniRef90	UniRef90_A0A413FWV9	XRE family transcriptional regulator	NA
UHGV-0137207_41	eggNOG-mapper	411459.RUMOBE_01022	sequence-specific DNA binding	NA
UHGV-0137207_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0137207_41	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0137207_41	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0137207_42	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0137207_42	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0137207_42	UniRef90	UniRef90_UPI001379CF69	phage antirepressor KilAC domain-containing protein	NA
UHGV-0137207_42	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0137207_42	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0137207_42	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0137207_42	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0137207_42	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0137207_43	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0137207_43	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0137207_47	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0137207_47	UniRef90	UniRef90_U2SK35	YqaJ viral recombinase family protein	NA
UHGV-0137207_47	eggNOG-mapper	1226322.HMPREF1545_00014	YqaJ viral recombinase family	NA
UHGV-0137207_47	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0137207_47	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0137207_47	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0137207_47	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0137207_48	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0137207_48	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0137207_48	UniRef90	UniRef90_UPI0018C50A8E	recombinase RecT	NA
UHGV-0137207_48	eggNOG-mapper	1196028.ALEF01000043_gene487	RecT family	NA
UHGV-0137207_48	Pfam	PF03837	RecT family	RecT
UHGV-0137207_48	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0137207_48	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0137207_48	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0137207_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0137207_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0137207_49	UniRef90	UniRef90_A0A1C7FSG7	Single-stranded DNA-binding protein	NA
UHGV-0137207_49	eggNOG-mapper	1519439.JPJG01000082_gene432	Single-strand binding protein family	NA
UHGV-0137207_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0137207_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0137207_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0137207_49	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0137207_49	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0137207_50	PHROG	phrog_15768	NA	unknown function
UHGV-0137207_50	UniRef90	UniRef90_UPI001959E913	NA	NA
UHGV-0137207_50	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0137207_50	AcrCatalog	cluster_38323	NA	NA
UHGV-0137207_50	Pfam	PF19808	NA	DUF6291
UHGV-0137207_50	Structural annotation	PF19808	NA	NA
UHGV-0137207_51	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0137207_51	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0137207_51	UniRef90	UniRef90_UPI00137A9A0F	ATP-binding protein	NA
UHGV-0137207_51	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-0137207_51	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0137207_51	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0137207_51	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0137207_51	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0137207_54	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0137207_54	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0137207_54	eggNOG-mapper	1226322.HMPREF1545_00295	NA	NA
UHGV-0137207_54	Pfam	PF06356	NA	DUF1064
UHGV-0137207_54	Structural annotation	PF06356	NA	NA
UHGV-0137207_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0137207_57	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0137207_57	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0137207_58	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0137207_58	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0137207_58	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0137207_58	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0137207_58	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0137207_58	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0137207_58	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0137207_59	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0137207_59	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA