UHGV-0137244

Genome information

Genome length 36,609 bps

CDS count 54

Completeness 66.22% (medium-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0137244
vOTU ID	vOTU-017884
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_367673
BioSample	NA
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.64
Jumbo phage	No

Genome content
Genome length	36,609 bps
GC content	40.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	85.08%
Average CDS length	578.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0137244_1	PHROG	phrog_15946	NA	unknown function
UHGV-0137244_1	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0137244_2	eggNOG-mapper	1041147.AUFB01000014_gene329	NA	NA
UHGV-0137244_2	Structural annotation	TIGR01898, COG1604	NA	NA
UHGV-0137244_3	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0137244_3	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0137244_3	UniRef90	UniRef90_A0A174S919	Phage anti-repressor protein	NA
UHGV-0137244_3	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0137244_3	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0137244_3	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0137244_3	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0137244_3	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0137244_4	UniRef90	UniRef90_UPI001D05EDA5	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0137244_4	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0137244_4	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0137244_4	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0137244_6	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0137244_6	PHROG	phrog_95	integrase	integration and excision
UHGV-0137244_6	UniRef90	UniRef90_UPI001D084942	recombinase family protein	NA
UHGV-0137244_6	eggNOG-mapper	246199.CUS_6803	NA	NA
UHGV-0137244_6	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0137244_6	Pfam	PF07508	Recombinase	Recombinase
UHGV-0137244_6	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0137244_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0137244_6	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0137244_7	eggNOG-mapper	397290.C810_01325	NA	NA
UHGV-0137244_8	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0137244_9	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0137244_10	PHROG	phrog_16490	NA	unknown function
UHGV-0137244_10	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0137244_11	PHROG	phrog_3675	NA	unknown function
UHGV-0137244_11	UniRef90	UniRef90_UPI001D08FCA4	YjcQ family protein	NA
UHGV-0137244_11	eggNOG-mapper	1235802.C823_04879	YjcQ protein	NA
UHGV-0137244_11	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0137244_11	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0137244_12	PHROG	phrog_20016	NA	unknown function
UHGV-0137244_12	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0137244_12	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0137244_12	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0137244_13	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0137244_14	PHROG	phrog_1233	NA	unknown function
UHGV-0137244_14	UniRef90	UniRef90_A0A345BPX6	Metal-dependent hydrolase	NA
UHGV-0137244_14	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0137244_16	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0137244_16	UniRef90	UniRef90_A0A1M7Y456	Phage regulatory protein Rha	NA
UHGV-0137244_16	eggNOG-mapper	180332.JTGN01000007_gene3610	PFAM Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0137244_16	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0137244_16	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0137244_16	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0137244_17	UniRef90	UniRef90_UPI001C01E16A	sporulation protein Cse60	NA
UHGV-0137244_17	Structural annotation	PF10957	NA	NA
UHGV-0137244_20	Structural annotation	PF18760	NA	NA
UHGV-0137244_21	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0137244_21	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0137244_21	UniRef90	UniRef90_A0A4U9RE12	KilA protein, phage-related DNA binding protein	NA
UHGV-0137244_21	eggNOG-mapper	1391647.AVSV01000003_gene1780	Phage antirepressor protein	NA
UHGV-0137244_21	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0137244_21	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0137244_21	COG	COG3617	Prophage antirepressor	NA
UHGV-0137244_21	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0137244_25	UniRef90	UniRef90_UPI001105830B	helix-turn-helix domain-containing protein	NA
UHGV-0137244_25	eggNOG-mapper	1506994.JNLQ01000005_gene3979	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0137244_25	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0137244_25	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-0137244_26	PHROG	phrog_31631	NA	unknown function
UHGV-0137244_28	eggNOG-mapper	397290.C810_01353	NA	NA
UHGV-0137244_32	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0137244_32	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0137244_32	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0137244_32	COG	COG5410	NA	NA
UHGV-0137244_32	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0137244_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0137244_33	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0137244_33	Structural annotation	PF02996	NA	NA
UHGV-0137244_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0137244_35	UniRef90	UniRef90_R6CA99	SPP1 family phage portal protein	NA
UHGV-0137244_35	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0137244_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0137244_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0137244_37	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0137244_37	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0137244_38	PHROG	phrog_5717	tail protein	tail
UHGV-0137244_38	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0137244_38	COG	COG4675	Phage tail collar domain	NA
UHGV-0137244_40	eggNOG-mapper	1232453.BAIF02000058_gene1627	NA	NA
UHGV-0137244_41	PHROG	phrog_29	major head protein	head and packaging
UHGV-0137244_41	UniRef90	UniRef90_UPI001BB87CDE	Major capsid protein	NA
UHGV-0137244_41	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0137244_41	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0137244_41	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0137244_42	Structural annotation	PF21169	NA	NA
UHGV-0137244_43	eggNOG-mapper	476272.RUMHYD_01948	NA	NA
UHGV-0137244_44	PHROG	phrog_1863	NA	unknown function
UHGV-0137244_44	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA
UHGV-0137244_45	PHROG	phrog_443	holin	lysis
UHGV-0137244_45	UniRef90	UniRef90_UPI001B3C9F75	holin	NA
UHGV-0137244_45	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0137244_45	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0137244_45	Structural annotation	PF16945	NA	NA
UHGV-0137244_46	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0137244_46	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0137244_47	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0137244_47	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0137244_47	AcrCatalog	cluster_24841	NA	NA
UHGV-0137244_48	Structural annotation	PF05657	NA	NA
UHGV-0137244_49	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0137244_49	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0137244_50	Structural annotation	PF16478	NA	NA
UHGV-0137244_52	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0137244_52	UniRef90	UniRef90_A0A173S7X9	Phage-related protein	NA
UHGV-0137244_52	eggNOG-mapper	1232453.BAIF02000058_gene1637	phage tail tape measure protein	NA
UHGV-0137244_52	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0137244_52	COG	COG5412	Phage-related protein	NA
UHGV-0137244_52	Structural annotation	NF012014	NA	NA
UHGV-0137244_53	PHROG	phrog_1194	NA	unknown function
UHGV-0137244_53	eggNOG-mapper	585501.HMPREF6123_0824	NA	NA
UHGV-0137244_53	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0137244_54	PHROG	phrog_13879	NA	unknown function
UHGV-0137244_54	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA