UHGV-0137250

Genome information

Genome length 55,994 bps

CDS count 80

Completeness 93.70% (high-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0137250
vOTU ID	vOTU-059762
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_367671
BioSample	SAMN03283272
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.70% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	31
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.58
Jumbo phage	No

Genome content
Genome length	55,994 bps
GC content	50.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	80
CDS density	93.06%
Average CDS length	654.49 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0137250_2	PHROG	phrog_4303	NA	unknown function
UHGV-0137250_2	eggNOG-mapper	742740.HMPREF9474_02277	NA	NA
UHGV-0137250_3	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0137250_3	UniRef90	UniRef90_A0A2U8UQU6	Helix-turn-helix DNA binding domain protein	NA
UHGV-0137250_3	eggNOG-mapper	742740.HMPREF9474_02278	NA	NA
UHGV-0137250_3	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0137250_3	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0137250_3	Structural annotation	PF05183	NA	NA
UHGV-0137250_4	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0137250_4	UniRef90	UniRef90_UPI001D06A0CE	NA	NA
UHGV-0137250_4	eggNOG-mapper	411460.RUMTOR_01357	NA	NA
UHGV-0137250_4	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0137250_5	UniRef90	UniRef90_A0A140G723	Holliday junction resolvase	NA
UHGV-0137250_5	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-0137250_5	Structural annotation	PF01870, COG1591	NA	NA
UHGV-0137250_6	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0137250_6	UniRef90	UniRef90_A0A4D7AM36	DEAD/DEAH box helicase family protein	NA
UHGV-0137250_6	eggNOG-mapper	742740.HMPREF9474_02299	Helicase conserved C-terminal domain	NA
UHGV-0137250_6	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0137250_6	Structural annotation	PF02399, MF_01821, NF038318, COG0553	NA	NA
UHGV-0137250_7	PHROG	phrog_4787	single strand annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0137250_7	UniRef90	UniRef90_A0A7X7CP10	Bro-N domain-containing protein	NA
UHGV-0137250_7	eggNOG-mapper	742733.HMPREF9469_05065	NA	NA
UHGV-0137250_7	Structural annotation	PF21265, MF_04153	NA	NA
UHGV-0137250_8	PHROG	phrog_236	nucleotide kinase	other
UHGV-0137250_8	UniRef90	UniRef90_UPI001C3EDB18	NA	NA
UHGV-0137250_8	eggNOG-mapper	247490.KSU1_C1079	NA	NA
UHGV-0137250_8	Pfam	PF11753	NA	DUF3310
UHGV-0137250_9	PHROG	phrog_19852	NA	unknown function
UHGV-0137250_9	eggNOG-mapper	742740.HMPREF9474_02297	NA	NA
UHGV-0137250_10	KOfam	K02336	polB; DNA polymerase II [EC:2.7.7.7]	NA
UHGV-0137250_10	PHROG	phrog_4210	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0137250_10	UniRef90	UniRef90_UPI001D06573B	NA	NA
UHGV-0137250_10	eggNOG-mapper	428125.CLOLEP_01375	DNA polymerase type-B family	NA
UHGV-0137250_10	Pfam	PF19263	NA	DUF5906
UHGV-0137250_10	Structural annotation	PF00136, PF09250, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0137250_14	PHROG	phrog_4678	NA	unknown function
UHGV-0137250_14	UniRef90	UniRef90_D4P7T9	Gp071	NA
UHGV-0137250_14	eggNOG-mapper	478749.BRYFOR_08561	NA	NA
UHGV-0137250_16	PHROG	phrog_2152	NA	unknown function
UHGV-0137250_16	UniRef90	UniRef90_D4P7I0	Gp069	NA
UHGV-0137250_16	eggNOG-mapper	691965.D4P7I0_9CAUD	NA	NA
UHGV-0137250_16	Pfam	PF19880	NA	DUF6353
UHGV-0137250_16	Structural annotation	PF19880	NA	NA
UHGV-0137250_19	PHROG	phrog_4079	NA	unknown function
UHGV-0137250_19	UniRef90	UniRef90_D4P7H8	Gp067	NA
UHGV-0137250_19	eggNOG-mapper	742733.HMPREF9469_05076	NA	NA
UHGV-0137250_26	PHROG	phrog_2152	NA	unknown function
UHGV-0137250_26	UniRef90	UniRef90_UPI0011CA98EE	NA	NA
UHGV-0137250_26	eggNOG-mapper	742733.HMPREF9469_05079	NA	NA
UHGV-0137250_26	Pfam	PF19880	NA	DUF6353
UHGV-0137250_26	Structural annotation	PF19880	NA	NA
UHGV-0137250_28	KOfam	K01494	dcd; dCTP deaminase [EC:3.5.4.13]	NA
UHGV-0137250_28	PHROG	phrog_1663	dCTP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0137250_28	UniRef90	UniRef90_A0A0P9CY09	dCTP deaminase, dUMP-forming	NA
UHGV-0137250_28	eggNOG-mapper	658086.HMPREF0994_04120	Belongs to the dCTP deaminase family	NA
UHGV-0137250_28	Pfam	PF06559	2'-deoxycytidine 5'-triphosphate deaminase (DCD)	DCD
UHGV-0137250_28	NCBIFam	TIGR02274.1	dCTP deaminase	NA
UHGV-0137250_28	COG	COG0717	dCTP deaminase	NA
UHGV-0137250_28	Structural annotation	PF06559, MF_00146, TIGR02274, COG0717	NA	NA
UHGV-0137250_30	PHROG	phrog_6721	NA	unknown function
UHGV-0137250_30	eggNOG-mapper	428125.CLOLEP_01387	NA	NA
UHGV-0137250_30	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0137250_34	Structural annotation	PF18892	NA	NA
UHGV-0137250_37	Structural annotation	MF_01387	NA	NA
UHGV-0137250_46	Structural annotation	PF10743, TIGR01764, COG3311	NA	NA
UHGV-0137250_47	PHROG	phrog_32444	NA	unknown function
UHGV-0137250_47	eggNOG-mapper	428125.CLOLEP_01410	NA	NA
UHGV-0137250_49	PHROG	phrog_37604	NA	unknown function
UHGV-0137250_49	eggNOG-mapper	1123075.AUDP01000020_gene1531	NA	NA
UHGV-0137250_50	KOfam	K14059	int; integrase	NA
UHGV-0137250_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0137250_50	UniRef90	UniRef90_A0A1Y3SS19	Tyr recombinase domain-containing protein	NA
UHGV-0137250_50	eggNOG-mapper	1304866.K413DRAFT_1893	Belongs to the 'phage' integrase family	NA
UHGV-0137250_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0137250_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0137250_50	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0137250_51	PHROG	phrog_1233	NA	unknown function
UHGV-0137250_51	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0137250_51	Structural annotation	PF13058	NA	NA
UHGV-0137250_52	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0137250_53	PHROG	phrog_20016	NA	unknown function
UHGV-0137250_53	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0137250_54	PHROG	phrog_16490	NA	unknown function
UHGV-0137250_54	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0137250_56	PHROG	phrog_881	holin	lysis
UHGV-0137250_56	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-0137250_56	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0137250_56	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0137250_56	Structural annotation	PF16938	NA	NA
UHGV-0137250_57	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0137250_58	KOfam	K22519	PTAC5; protein disulfide-isomerase [EC:5.3.4.1]	NA
UHGV-0137250_58	PHROG	phrog_2649	endolysin	lysis
UHGV-0137250_58	UniRef90	UniRef90_A0A1V5Q5W6	Putative peptidoglycan binding domain protein	NA
UHGV-0137250_58	eggNOG-mapper	397290.C810_01418	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0137250_58	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0137250_58	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0137250_58	Structural annotation	PF18342, PF01471, PF00877, NF038080, COG4991, COG3409, COG0791	NA	NA
UHGV-0137250_59	PHROG	phrog_13173	tail fiber protein	tail
UHGV-0137250_59	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0137250_61	Structural annotation	PF16640	NA	NA
UHGV-0137250_62	PHROG	phrog_372	tail protein	tail
UHGV-0137250_62	UniRef90	UniRef90_UPI000DF8304E	NA	NA
UHGV-0137250_62	eggNOG-mapper	1416759.AYMR01000009_gene3061	NA	NA
UHGV-0137250_62	Pfam	PF05895	NA	DUF859
UHGV-0137250_64	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0137250_64	eggNOG-mapper	195103.CPF_1574	Prophage endopeptidase tail	NA
UHGV-0137250_64	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0137250_64	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0137250_64	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0137250_64	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0137250_64	Structural annotation	PF06605, PF18342, TIGR01665, COG4926	NA	NA
UHGV-0137250_65	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0137250_65	UniRef90	UniRef90_A0A1W1Z4I2	Phage-related protein	NA
UHGV-0137250_65	eggNOG-mapper	632245.CLP_1659	tail component	NA
UHGV-0137250_65	COG	COG4722	Phage-related protein YomH	NA
UHGV-0137250_65	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0137250_68	Structural annotation	PF06865, MF_01537, NF007875, COG3123	NA	NA
UHGV-0137250_69	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0137250_69	eggNOG-mapper	665956.HMPREF1032_00686	phage tail tape measure protein	NA
UHGV-0137250_69	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0137250_69	COG	COG5412	Phage-related protein	NA
UHGV-0137250_70	UniRef90	UniRef90_A0A7X5IVV8	HK97 gp10 family phage protein	NA
UHGV-0137250_70	eggNOG-mapper	742733.HMPREF9469_05021	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0137250_70	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0137250_71	PHROG	phrog_4338	NA	unknown function
UHGV-0137250_71	eggNOG-mapper	428125.CLOLEP_01417	NA	NA
UHGV-0137250_72	PHROG	phrog_4282	NA	unknown function
UHGV-0137250_72	eggNOG-mapper	478749.BRYFOR_08517	NA	NA
UHGV-0137250_73	PHROG	phrog_2645	major tail protein	tail
UHGV-0137250_73	UniRef90	UniRef90_A0A644ZQB8	Big_5 domain-containing protein	NA
UHGV-0137250_73	eggNOG-mapper	742740.HMPREF9474_02267	NA	NA
UHGV-0137250_73	Pfam	PF06488	Phage tail tube protein	L_lac_phage_MSP
UHGV-0137250_73	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0137250_74	PHROG	phrog_78	tail terminator	connector
UHGV-0137250_74	UniRef90	UniRef90_A0A5J6D7U9	Tail terminator	NA
UHGV-0137250_74	eggNOG-mapper	691965.D4P7D8_9CAUD	NA	NA
UHGV-0137250_74	Structural annotation	PF20765	NA	NA
UHGV-0137250_75	PHROG	phrog_4270	NA	unknown function
UHGV-0137250_75	eggNOG-mapper	428125.CLOLEP_01413	NA	NA
UHGV-0137250_75	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0137250_77	KOfam	K06904	NA	NA
UHGV-0137250_77	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0137250_77	UniRef90	UniRef90_A0A1Y4MXD5	Phage major capsid protein	NA
UHGV-0137250_77	eggNOG-mapper	691965.D4P7D6_9CAUD	peptidase activity	NA
UHGV-0137250_77	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0137250_77	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0137250_77	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-0137250_78	PHROG	phrog_12	portal protein	head and packaging
UHGV-0137250_78	UniRef90	UniRef90_A0A1Y4MMD6	Phage portal protein	NA
UHGV-0137250_78	eggNOG-mapper	428125.CLOLEP_01411	Phage portal protein	NA
UHGV-0137250_78	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0137250_78	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0137250_79	PHROG	phrog_7502	NA	unknown function
UHGV-0137250_80	PHROG	phrog_2699	terminase large subunit	head and packaging
UHGV-0137250_80	UniRef90	UniRef90_A0A6N9PEJ0	Terminase (Fragment)	NA
UHGV-0137250_80	eggNOG-mapper	742740.HMPREF9474_02272	Phage Terminase	NA
UHGV-0137250_80	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0137250_80	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA