UHGV-0137326

Genome information

Genome length 33,890 bps

CDS count 63

Completeness 80.24% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0137326
vOTU ID	vOTU-025344
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_371882
BioSample	NA
Country	Unknown
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.95
Jumbo phage	No

Genome content
Genome length	33,890 bps
GC content	56.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	91.15%
Average CDS length	494.81 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0137326_1	PHROG	phrog_27197	NA	unknown function
UHGV-0137326_1	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0137326_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0137326_1	Structural annotation	NF007410	NA	NA
UHGV-0137326_2	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0137326_5	Structural annotation	PF06718	NA	NA
UHGV-0137326_7	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0137326_7	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0137326_8	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0137326_8	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0137326_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0137326_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0137326_9	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0137326_9	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0137326_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0137326_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0137326_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0137326_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0137326_9	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0137326_10	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0137326_10	UniRef90	UniRef90_UPI001C02E649	DnaD domain protein	NA
UHGV-0137326_10	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0137326_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0137326_10	Structural annotation	PF09681, MF_01819, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0137326_11	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0137326_12	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0137326_14	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0137326_14	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0137326_14	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0137326_14	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0137326_15	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0137326_15	UniRef90	UniRef90_UPI001CBD79D0	DNA cytosine methyltransferase	NA
UHGV-0137326_15	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0137326_15	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0137326_18	PHROG	phrog_3136	NA	unknown function
UHGV-0137326_18	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-0137326_18	Pfam	PF04266	ASCH domain	ASCH
UHGV-0137326_18	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0137326_18	Structural annotation	PF04266, MF_00684, NF003443, COG4933	NA	NA
UHGV-0137326_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0137326_19	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0137326_19	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0137326_19	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0137326_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0137326_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0137326_19	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0137326_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0137326_21	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0137326_23	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0137326_23	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0137326_23	Structural annotation	PF04218	NA	NA
UHGV-0137326_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0137326_24	PHROG	phrog_10250	NA	unknown function
UHGV-0137326_24	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0137326_24	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0137326_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0137326_24	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0137326_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0137326_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0137326_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0137326_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0137326_25	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0137326_25	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0137326_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0137326_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0137326_27	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0137326_27	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0137326_27	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0137326_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0137326_27	COG	COG2369	NA	NA
UHGV-0137326_27	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0137326_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0137326_30	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0137326_30	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0137326_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0137326_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0137326_33	Structural annotation	PF06810	NA	NA
UHGV-0137326_34	PHROG	phrog_544	major head protein	head and packaging
UHGV-0137326_34	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0137326_34	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0137326_34	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0137326_36	PHROG	phrog_17977	NA	unknown function
UHGV-0137326_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0137326_37	Structural annotation	PF13554	NA	NA
UHGV-0137326_38	PHROG	phrog_885	major tail protein	tail
UHGV-0137326_38	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0137326_38	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0137326_41	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0137326_41	UniRef90	UniRef90_A0A844DDD5	Tape measure protein	NA
UHGV-0137326_41	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0137326_41	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0137326_41	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0137326_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0137326_41	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0137326_42	PHROG	phrog_3558	tail protein	tail
UHGV-0137326_42	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0137326_42	eggNOG-mapper	1120933.ATUY01000002_gene164	Prophage endopeptidase tail	NA
UHGV-0137326_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0137326_42	COG	COG4926	Phage-related protein	NA
UHGV-0137326_42	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0137326_43	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0137326_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-0137326_43	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0137326_45	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0137326_45	UniRef90	UniRef90_A0A1Q6KPN8	NA	NA
UHGV-0137326_45	eggNOG-mapper	718252.FP2_16970	NA	NA
UHGV-0137326_45	Structural annotation	PF19789, PF18911	NA	NA
UHGV-0137326_47	UniRef90	UniRef90_UPI001D07AB37	XkdX family protein	NA
UHGV-0137326_47	eggNOG-mapper	718252.FP2_16990	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0137326_47	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0137326_47	Structural annotation	PF09693	NA	NA
UHGV-0137326_48	KOfam	K07273	acm; lysozyme	NA
UHGV-0137326_48	PHROG	phrog_291	endolysin	lysis
UHGV-0137326_48	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0137326_48	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0137326_48	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0137326_48	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0137326_48	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0137326_50	PHROG	phrog_15303	NA	unknown function
UHGV-0137326_52	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0137326_53	PHROG	phrog_5765	NA	unknown function
UHGV-0137326_53	UniRef90	UniRef90_UPI001D0EF465	BC1881 family protein	NA
UHGV-0137326_53	eggNOG-mapper	1095750.HMPREF9970_1008	NA	NA
UHGV-0137326_53	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0137326_54	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0137326_54	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0137326_54	eggNOG-mapper	944479.JQLX01000018_gene150	Helix-turn-helix XRE-family like proteins	NA
UHGV-0137326_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0137326_54	COG	COG0662	Mannose-6-phosphate isomerase, cupin superfamily	NA
UHGV-0137326_54	Structural annotation	PF01381, TIGR03070, COG1396	NA	NA
UHGV-0137326_56	PHROG	phrog_3754	NA	unknown function
UHGV-0137326_56	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0137326_57	PHROG	phrog_21718	NA	unknown function
UHGV-0137326_57	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0137326_58	PHROG	phrog_22984	NA	unknown function
UHGV-0137326_59	PHROG	phrog_16490	NA	unknown function
UHGV-0137326_59	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0137326_61	PHROG	phrog_20016	NA	unknown function
UHGV-0137326_61	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0137326_61	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0137326_61	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0137326_62	Structural annotation	PF12510	NA	NA