UHGV-0137536

Genome information

Genome length 26,616 bps

CDS count 41

Completeness 60.96% (medium-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0137536
vOTU ID	vOTU-032750
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_368831
BioSample	SAMN03283249
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.96% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.14
Jumbo phage	No

Genome content
Genome length	26,616 bps
GC content	46.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	41
CDS density	94.70%
Average CDS length	619.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0137536_2	Structural annotation	MF_00773, NF041909, COG2075	NA	NA
UHGV-0137536_4	KOfam	K03040	rpoA; DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]	NA
UHGV-0137536_4	PHROG	phrog_15077	NA	unknown function
UHGV-0137536_4	eggNOG-mapper	1298920.KI911353_gene4863	NA	NA
UHGV-0137536_4	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0137536_4	Structural annotation	NF038070	NA	NA
UHGV-0137536_10	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0137536_10	eggNOG-mapper	610130.Closa_1384	NA	NA
UHGV-0137536_10	Structural annotation	PF02996	NA	NA
UHGV-0137536_11	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0137536_11	UniRef90	UniRef90_A0A3E2VM05	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0137536_11	eggNOG-mapper	397287.C807_02050	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0137536_11	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0137536_11	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0137536_11	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0137536_12	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0137536_12	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0137536_12	UniRef90	UniRef90_A0A6N3A0R6	HicB-like domain-containing protein	NA
UHGV-0137536_12	eggNOG-mapper	397287.C807_02051	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0137536_12	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0137536_12	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0137536_12	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0137536_14	UniRef90	UniRef90_A0A174MBR7	Utp14a protein-like protein	NA
UHGV-0137536_14	eggNOG-mapper	610130.Closa_0632	NA	NA
UHGV-0137536_15	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0137536_15	UniRef90	UniRef90_A0A6N3EQE1	ATPase subunit of terminase (GpP-like)	NA
UHGV-0137536_15	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0137536_15	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0137536_15	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0137536_15	COG	COG5484	NA	NA
UHGV-0137536_15	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0137536_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0137536_16	PHROG	phrog_10250	NA	unknown function
UHGV-0137536_16	UniRef90	UniRef90_A0A174R281	Phage terminase, large subunit, PBSX family	NA
UHGV-0137536_16	eggNOG-mapper	642492.Clole_2765	Phage terminase, large subunit, PBSX family	NA
UHGV-0137536_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0137536_16	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0137536_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0137536_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0137536_16	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0137536_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-0137536_17	UniRef90	UniRef90_A0A174IHP1	Phage portal protein, SPP1 family	NA
UHGV-0137536_17	eggNOG-mapper	610130.Closa_1391	Phage portal protein, SPP1 family	NA
UHGV-0137536_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0137536_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0137536_18	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0137536_18	UniRef90	UniRef90_UPI00164EB72C	minor capsid protein	NA
UHGV-0137536_18	eggNOG-mapper	203119.Cthe_2476	Phage Mu protein F like protein	NA
UHGV-0137536_18	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0137536_18	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0137536_18	COG	COG2369	NA	NA
UHGV-0137536_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0137536_20	UniRef90	UniRef90_D9R920	Minor structural GP20 protein	NA
UHGV-0137536_20	eggNOG-mapper	610130.Closa_1394	Phage minor structural protein GP20	NA
UHGV-0137536_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0137536_20	Structural annotation	PF06810	NA	NA
UHGV-0137536_21	PHROG	phrog_247	major head protein	head and packaging
UHGV-0137536_21	UniRef90	UniRef90_D9R921	Phage coat protein	NA
UHGV-0137536_21	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-0137536_21	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0137536_21	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0137536_22	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0137536_22	PHROG	phrog_11157	NA	unknown function
UHGV-0137536_22	UniRef90	UniRef90_D3ABG9	Big_13 domain-containing protein	NA
UHGV-0137536_22	eggNOG-mapper	33035.JPJF01000023_gene3227	NA	NA
UHGV-0137536_22	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0137536_22	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0137536_22	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0137536_22	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0137536_23	PHROG	phrog_32322	NA	unknown function
UHGV-0137536_23	UniRef90	UniRef90_A0A174IHX6	Ig-like_bact domain-containing protein	NA
UHGV-0137536_23	eggNOG-mapper	1280698.AUJS01000007_gene1055	NA	NA
UHGV-0137536_23	Pfam	PF13754	NA	Big_3_4
UHGV-0137536_23	Structural annotation	PF13754	NA	NA
UHGV-0137536_24	eggNOG-mapper	1280698.AUJS01000007_gene1056	NA	NA
UHGV-0137536_24	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0137536_26	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0137536_26	UniRef90	UniRef90_A0A1E3A379	Phage gp6-like head-tail connector protein	NA
UHGV-0137536_26	eggNOG-mapper	610130.Closa_1396	NA	NA
UHGV-0137536_26	Structural annotation	PF05135	NA	NA
UHGV-0137536_27	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0137536_27	UniRef90	UniRef90_UPI00164AF442	ABC transporter ATP-binding protein	NA
UHGV-0137536_27	eggNOG-mapper	1121335.Clst_0394	NA	NA
UHGV-0137536_27	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0137536_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0137536_28	UniRef90	UniRef90_A0A174IIP2	Bacteriophage protein	NA
UHGV-0137536_28	eggNOG-mapper	610130.Closa_1398	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0137536_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0137536_28	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0137536_29	PHROG	phrog_525	NA	unknown function
UHGV-0137536_29	UniRef90	UniRef90_A0A174IGV6	NA	NA
UHGV-0137536_29	eggNOG-mapper	203119.Cthe_2483	NA	NA
UHGV-0137536_29	Pfam	PF20765	NA	DUF6838
UHGV-0137536_29	Structural annotation	PF20765	NA	NA
UHGV-0137536_30	PHROG	phrog_279	tail sheath	tail
UHGV-0137536_30	UniRef90	UniRef90_A0A6N3EUR6	Phage tail sheath protein	NA
UHGV-0137536_30	eggNOG-mapper	610130.Closa_1400	Phage tail sheath C-terminal domain	NA
UHGV-0137536_30	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0137536_30	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0137536_30	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0137536_31	PHROG	phrog_365	tail protein	tail
UHGV-0137536_31	UniRef90	UniRef90_A0A174RA49	Phage portal protein	NA
UHGV-0137536_31	eggNOG-mapper	610130.Closa_1401	Phage tail tube protein	NA
UHGV-0137536_31	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0137536_31	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0137536_32	PHROG	phrog_806	NA	unknown function
UHGV-0137536_32	UniRef90	UniRef90_A0A6N3A3I0	Telomeric repeat-binding factor 2	NA
UHGV-0137536_32	eggNOG-mapper	1449050.JNLE01000003_gene423	NA	NA
UHGV-0137536_32	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0137536_32	Pfam	PF11611	NA	DUF4352
UHGV-0137536_33	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0137536_33	UniRef90	UniRef90_D3AJ47	Phage XkdN-like protein	NA
UHGV-0137536_33	eggNOG-mapper	1121335.Clst_0400	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0137536_33	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0137536_33	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0137536_34	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0137536_34	UniRef90	UniRef90_A0A6N3A3A2	TMP_3 domain-containing protein	NA
UHGV-0137536_34	eggNOG-mapper	610130.Closa_1404	tape measure	NA
UHGV-0137536_34	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0137536_34	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0137536_34	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0137536_34	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0137536_35	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0137536_35	PHROG	phrog_380	endolysin	lysis
UHGV-0137536_35	UniRef90	UniRef90_A0A174R8E8	Peptidoglycan-binding lysin domain-containing protein	NA
UHGV-0137536_35	eggNOG-mapper	610130.Closa_1405	LysM domain	NA
UHGV-0137536_35	Pfam	PF01476	LysM domain	LysM
UHGV-0137536_35	COG	COG1388	LysM repeat	NA
UHGV-0137536_35	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0137536_36	PHROG	phrog_400	tail protein	tail
UHGV-0137536_36	UniRef90	UniRef90_A0A174R8Z2	NA	NA
UHGV-0137536_36	eggNOG-mapper	610130.Closa_1406	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0137536_36	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0137536_36	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0137536_37	UniRef90	UniRef90_A0A413L5A6	DNA helicase	NA
UHGV-0137536_37	eggNOG-mapper	610130.Closa_1407	NA	NA
UHGV-0137536_37	Structural annotation	PF10844, NF003076	NA	NA
UHGV-0137536_38	PHROG	phrog_120	baseplate protein	tail
UHGV-0137536_38	UniRef90	UniRef90_A0A174RCU6	Phage-like element PBSX protein, XkdS	NA
UHGV-0137536_38	eggNOG-mapper	610130.Closa_1408	NA	NA
UHGV-0137536_38	Pfam	PF10934	NA	DUF2634
UHGV-0137536_38	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0137536_38	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0137536_39	PHROG	phrog_6	baseplate protein	tail
UHGV-0137536_39	UniRef90	UniRef90_D3AJ53	Baseplate J-like protein	NA
UHGV-0137536_39	eggNOG-mapper	610130.Closa_1409	Baseplate J-like protein	NA
UHGV-0137536_39	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0137536_39	COG	COG3299	NA	NA
UHGV-0137536_39	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0137536_40	PHROG	phrog_521	tail protein	tail
UHGV-0137536_40	UniRef90	UniRef90_A0A174R4L0	Phage-like element pbsx protein xkdT	NA
UHGV-0137536_40	eggNOG-mapper	610130.Closa_1410	NA	NA
UHGV-0137536_40	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0137536_40	COG	COG3778	NA	NA
UHGV-0137536_40	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0137536_41	PHROG	phrog_30004	NA	unknown function
UHGV-0137536_41	eggNOG-mapper	411902.CLOBOL_05647	nuclear chromosome segregation	NA
UHGV-0137536_41	COG	COG5301	Phage-related tail fiber protein	NA