UHGV-0137764

Genome information

Genome length 40,345 bps

CDS count 54

Completeness 91.32% (high-quality)

geNomad score 0.9691

Prediction confidence Confident

Genome information
Genome ID	UHGV-0137764
vOTU ID	vOTU-007996
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_350555
BioSample	NA
Country	Fiji
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.32% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9691
Virus hallmark genes (geNomad)	20
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.25
Jumbo phage	No

Genome content
Genome length	40,345 bps
GC content	38.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	90.32%
Average CDS length	677.22 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0137764_1	KOfam	K14059	int; integrase	NA
UHGV-0137764_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0137764_1	UniRef90	UniRef90_R5ELN9	Phage integrase	NA
UHGV-0137764_1	eggNOG-mapper	575788.VS_1669	Belongs to the 'phage' integrase family	NA
UHGV-0137764_1	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0137764_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0137764_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0137764_1	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0137764_2	UniRef90	UniRef90_A0A3C0CBA0	Ribonucleoside-triphosphate reductase	NA
UHGV-0137764_2	eggNOG-mapper	1410676.JNKL01000005_gene333	CTP reductase activity	NA
UHGV-0137764_2	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0137764_2	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0137764_3	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0137764_3	Structural annotation	NF040910	NA	NA
UHGV-0137764_6	PHROG	phrog_1833	tail fiber protein	tail
UHGV-0137764_6	UniRef90	UniRef90_A0A193LRQ3	Phage tail protein	NA
UHGV-0137764_6	eggNOG-mapper	556268.OFAG_00131	Phage Tail Collar Domain	NA
UHGV-0137764_6	COG	COG4675	Phage tail collar domain	NA
UHGV-0137764_6	Structural annotation	PF14600	NA	NA
UHGV-0137764_7	PHROG	phrog_203	tail protein	tail
UHGV-0137764_7	UniRef90	UniRef90_A0A6N9TJ05	NA	NA
UHGV-0137764_7	eggNOG-mapper	391038.Bphy_1869	NA	NA
UHGV-0137764_7	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0137764_7	COG	COG3778	NA	NA
UHGV-0137764_7	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0137764_8	PHROG	phrog_6	baseplate protein	tail
UHGV-0137764_8	UniRef90	UniRef90_R5ELP9	Baseplate_J domain-containing protein	NA
UHGV-0137764_8	eggNOG-mapper	296591.Bpro_3733	Baseplate J-like protein	NA
UHGV-0137764_8	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0137764_8	COG	COG3299	NA	NA
UHGV-0137764_8	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0137764_9	PHROG	phrog_180	tail protein	tail
UHGV-0137764_9	UniRef90	UniRef90_R5EKZ3	Mu-like prophage protein gp46	NA
UHGV-0137764_9	eggNOG-mapper	205922.Pfl01_1161	Phage protein GP46	NA
UHGV-0137764_9	Pfam	PF07409	NA	GP46
UHGV-0137764_9	COG	COG4381	NA	NA
UHGV-0137764_9	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0137764_10	UniRef90	UniRef90_R5EZ78	Prophage MuSo2	NA
UHGV-0137764_10	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-0137764_10	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0137764_10	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0137764_10	COG	COG4384	NA	NA
UHGV-0137764_10	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0137764_11	PHROG	phrog_177	tail protein	tail
UHGV-0137764_11	UniRef90	UniRef90_A0A2S7JEJ9	Baseplate protein	NA
UHGV-0137764_11	eggNOG-mapper	742821.HMPREF9464_01822	Tail protein	NA
UHGV-0137764_11	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0137764_11	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0137764_11	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0137764_13	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0137764_13	UniRef90	UniRef90_R5EKZ8	DNA_circ_N domain-containing protein	NA
UHGV-0137764_13	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0137764_13	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0137764_13	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0137764_13	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0137764_14	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0137764_14	UniRef90	UniRef90_A0A3S3C8R0	Phage tail tape measure protein	NA
UHGV-0137764_14	eggNOG-mapper	331869.BAL199_13795	phage tail tape measure protein	NA
UHGV-0137764_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0137764_14	COG	COG5412	Phage-related protein	NA
UHGV-0137764_14	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0137764_15	PHROG	phrog_166	tail protein	tail
UHGV-0137764_15	UniRef90	UniRef90_R5EZ88	Putative bacteriophage protein	NA
UHGV-0137764_15	eggNOG-mapper	1224136.AMFN01000003_gene3617	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0137764_15	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0137764_15	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0137764_16	PHROG	phrog_185	tail tube protein	tail
UHGV-0137764_16	UniRef90	UniRef90_A0A524BF51	Phage tail protein	NA
UHGV-0137764_16	eggNOG-mapper	343509.SG0718	phage tail	NA
UHGV-0137764_16	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0137764_16	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0137764_17	PHROG	phrog_165	tail sheath	tail
UHGV-0137764_17	UniRef90	UniRef90_R5ELR7	Mu tail sheath family protein	NA
UHGV-0137764_17	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0137764_17	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0137764_17	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0137764_17	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0137764_17	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0137764_18	PHROG	phrog_209	portal protein	head and packaging
UHGV-0137764_18	UniRef90	UniRef90_A0A8G2M0W4	NA	NA
UHGV-0137764_18	eggNOG-mapper	754331.AEME01000001_gene210	NA	NA
UHGV-0137764_18	Structural annotation	PF09646	NA	NA
UHGV-0137764_19	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0137764_19	UniRef90	UniRef90_A0A088UAH4	Bacteriophage HK97-gp10, tail-component family protein	NA
UHGV-0137764_19	Structural annotation	TIGR01725	NA	NA
UHGV-0137764_20	PHROG	phrog_25	head closure Hc1	connector
UHGV-0137764_20	eggNOG-mapper	1221522.B723_10620	Phage head-tail joining protein	NA
UHGV-0137764_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0137764_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0137764_21	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0137764_21	eggNOG-mapper	557598.LHK_01771	Phage gp6-like head-tail connector protein	NA
UHGV-0137764_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0137764_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0137764_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0137764_22	UniRef90	UniRef90_A0A5B7ZMF6	Phage major capsid protein	NA
UHGV-0137764_22	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-0137764_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0137764_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0137764_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0137764_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0137764_23	KOfam	K06904	NA	NA
UHGV-0137764_23	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0137764_23	UniRef90	UniRef90_A0A5B7ZLN2	HK97 family phage prohead protease	NA
UHGV-0137764_23	eggNOG-mapper	742821.HMPREF9464_01832	Caudovirus prohead serine protease	NA
UHGV-0137764_23	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0137764_23	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0137764_23	COG	COG3740	Phage head maturation protease	NA
UHGV-0137764_23	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0137764_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0137764_24	UniRef90	UniRef90_UPI001600F39C	phage portal protein	NA
UHGV-0137764_24	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0137764_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0137764_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0137764_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0137764_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0137764_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0137764_25	UniRef90	UniRef90_A0A6L6YGT4	Terminase large subunit	NA
UHGV-0137764_25	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0137764_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0137764_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0137764_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0137764_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0137764_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0137764_26	UniRef90	UniRef90_R5EL15	Putative phage terminase small subunit protein	NA
UHGV-0137764_26	eggNOG-mapper	380358.XALC_2399	Phage terminase, small subunit	NA
UHGV-0137764_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0137764_26	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0137764_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0137764_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0137764_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0137764_27	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0137764_27	UniRef90	UniRef90_R5EZA4	Restriction endonuclease	NA
UHGV-0137764_27	eggNOG-mapper	646529.Desaci_1289	HNH endonuclease	NA
UHGV-0137764_27	AcrCatalog	cluster_19695	NA	NA
UHGV-0137764_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0137764_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0137764_27	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0137764_31	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0137764_31	PHROG	phrog_6380	DNA methyltransferase	other
UHGV-0137764_31	UniRef90	UniRef90_A0A4S2EZN4	N-6 DNA methylase	NA
UHGV-0137764_31	eggNOG-mapper	1201292.DR75_1654	type I restriction-modification system	NA
UHGV-0137764_31	PADLOC	MTase_I_00005	Type I methyltransferase	RM
UHGV-0137764_31	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0137764_31	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0137764_31	Structural annotation	PF02384, MF_01872, TIGR00497, COG0286	NA	NA
UHGV-0137764_32	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0137764_32	PHROG	phrog_7	endolysin	lysis
UHGV-0137764_32	UniRef90	UniRef90_R5EL25	Lysozyme	NA
UHGV-0137764_32	eggNOG-mapper	243365.CV_0727	Phage lysozyme	NA
UHGV-0137764_32	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0137764_32	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0137764_32	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0137764_33	PHROG	phrog_126	holin/anti-holin	lysis
UHGV-0137764_33	UniRef90	UniRef90_R5EZB5	Phage holin lambda family protein	NA
UHGV-0137764_33	Pfam	PF05106	Phage holin family (Lysis protein S)	Phage_holin_3_1
UHGV-0137764_33	Structural annotation	PF05106, TIGR01594	NA	NA
UHGV-0137764_34	PHROG	phrog_5783	NA	unknown function
UHGV-0137764_34	UniRef90	UniRef90_R5EXU3	NYN domain-containing protein	NA
UHGV-0137764_34	eggNOG-mapper	1410676.JNKL01000034_gene1850	NYN domain	NA
UHGV-0137764_34	Pfam	PF01936	NYN domain	NYN
UHGV-0137764_34	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0137764_34	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0137764_36	Structural annotation	PF06530	NA	NA
UHGV-0137764_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0137764_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0137764_37	UniRef90	UniRef90_UPI001C62ED2C	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0137764_37	eggNOG-mapper	742823.HMPREF9465_00230	Holliday junction resolvase	NA
UHGV-0137764_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0137764_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0137764_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0137764_38	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0137764_38	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0137764_38	UniRef90	UniRef90_UPI001C62C367	replicative DNA helicase	NA
UHGV-0137764_38	eggNOG-mapper	762983.HMPREF9444_01711	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0137764_38	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0137764_38	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0137764_38	COG	COG0305	Replicative DNA helicase	NA
UHGV-0137764_38	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0137764_39	Structural annotation	PF11417	NA	NA
UHGV-0137764_40	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0137764_40	Structural annotation	PF05584, MF_01177, NF040939, COG5529	NA	NA
UHGV-0137764_41	PHROG	phrog_8008	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0137764_41	UniRef90	UniRef90_UPI001CC6D725	helix-turn-helix domain-containing protein	NA
UHGV-0137764_41	eggNOG-mapper	1266925.JHVX01000006_gene2048	NA	NA
UHGV-0137764_42	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0137764_42	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0137764_42	UniRef90	UniRef90_A0A350CT17	Helix-turn-helix transcriptional regulator	NA
UHGV-0137764_42	eggNOG-mapper	762966.HMPREF9439_01014	Peptidase S24-like	NA
UHGV-0137764_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0137764_42	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0137764_42	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0137764_42	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0137764_44	PHROG	phrog_3996	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0137764_44	Pfam	PF10097	NA	DUF2335
UHGV-0137764_46	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0137764_46	UniRef90	UniRef90_A0A2X0VDL9	Putative phage-type endonuclease	NA
UHGV-0137764_46	eggNOG-mapper	202956.BBNL01000011_gene2401	YqaJ-like viral recombinase domain	NA
UHGV-0137764_46	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0137764_46	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0137764_46	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0137764_47	PHROG	phrog_4171	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0137764_47	eggNOG-mapper	940282.CADQ01000022_gene2093	NA	NA
UHGV-0137764_51	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0137764_51	UniRef90	UniRef90_R5EXZ0	NA	NA
UHGV-0137764_51	eggNOG-mapper	525309.HMPREF0494_1794	HNH endonuclease	NA
UHGV-0137764_51	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0137764_51	Structural annotation	PF13392, COG3415	NA	NA
UHGV-0137764_52	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0137764_52	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0137764_52	UniRef90	UniRef90_A0A316SBG7	dUTP diphosphatase	NA
UHGV-0137764_52	eggNOG-mapper	1282887.AUJG01000016_gene1113	NA	NA
UHGV-0137764_52	Pfam	PF00692	dUTPase	dUTPase
UHGV-0137764_52	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0137764_52	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0137764_53	Pfam	PF05930	Prophage CP4-57 regulatory protein (AlpA)	Phage_AlpA
UHGV-0137764_53	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0137764_54	KOfam	K02406	fliC, hag; flagellin	NA
UHGV-0137764_54	PHROG	phrog_16088	NA	unknown function
UHGV-0137764_54	UniRef90	UniRef90_R5EYD9	Flagellin	NA
UHGV-0137764_54	eggNOG-mapper	1410676.JNKL01000098_gene180	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella	NA
UHGV-0137764_54	Pfam	PF00669	Bacterial flagellin N-terminal helical region	Flagellin_N
UHGV-0137764_54	Pfam	PF00700	Bacterial flagellin C-terminal helical region	Flagellin_C
UHGV-0137764_54	COG	COG1344	Flagellin and related hook-associated protein FlgL	NA