UHGV-0137775

Genome information

Genome length 28,274 bps

CDS count 43

Completeness 70.40% (medium-quality)

geNomad score 0.9687

Prediction confidence Confident

Genome information
Genome ID	UHGV-0137775
vOTU ID	vOTU-034786
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_368799
BioSample	SAMN03283238
Country	Peru
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9687
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.92
Jumbo phage	No

Genome content
Genome length	28,274 bps
GC content	37.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.71%
Average CDS length	613.74 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0137775_1	PHROG	phrog_30343	NA	unknown function
UHGV-0137775_1	eggNOG-mapper	411473.RUMCAL_00285	NA	NA
UHGV-0137775_2	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0137775_2	Structural annotation	PF15597	NA	NA
UHGV-0137775_4	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0137775_4	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0137775_7	eggNOG-mapper	97139.C824_00161	NA	NA
UHGV-0137775_8	eggNOG-mapper	469378.Ccur_02570	NA	NA
UHGV-0137775_9	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0137775_9	UniRef90	UniRef90_A0A415TAD1	VRR-NUC domain-containing protein	NA
UHGV-0137775_9	eggNOG-mapper	742740.HMPREF9474_02373	VRR_NUC	NA
UHGV-0137775_9	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0137775_9	Structural annotation	PF01870, MF_01490, NF002581, COG1591	NA	NA
UHGV-0137775_10	KOfam	K05521	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	NA
UHGV-0137775_10	PHROG	phrog_6572	ADP-ribosylglycohydrolase	other
UHGV-0137775_10	UniRef90	UniRef90_A0A7V0W1J2	ADP-ribosylglycohydrolase family protein	NA
UHGV-0137775_10	eggNOG-mapper	585543.HMPREF0969_00288	NA	NA
UHGV-0137775_10	Pfam	PF03747	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
UHGV-0137775_10	COG	COG1397	ADP-ribosylglycohydrolase	NA
UHGV-0137775_10	Structural annotation	PF03747, TIGR02662, COG1397	NA	NA
UHGV-0137775_11	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0137775_11	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0137775_11	UniRef90	UniRef90_A0A2H4J064	Putative helicase	NA
UHGV-0137775_11	eggNOG-mapper	1280692.AUJL01000009_gene2982	snf2 family	NA
UHGV-0137775_11	PADLOC	DpdE_00006	DpdE	DPD
UHGV-0137775_11	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0137775_11	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0137775_11	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0137775_12	PHROG	phrog_421	NA	unknown function
UHGV-0137775_12	UniRef90	UniRef90_A0A7U9X7X4	NA	NA
UHGV-0137775_12	eggNOG-mapper	97139.C824_00143	NA	NA
UHGV-0137775_12	Pfam	PF10979	NA	DUF2786
UHGV-0137775_12	Structural annotation	PF10979	NA	NA
UHGV-0137775_13	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0137775_13	UniRef90	UniRef90_A0A1Y4J1N7	Transcriptional regulator	NA
UHGV-0137775_13	eggNOG-mapper	1514668.JOOA01000002_gene1188	Helix-turn-helix XRE-family like proteins	NA
UHGV-0137775_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0137775_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0137775_13	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0137775_15	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0137775_17	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0137775_18	PHROG	phrog_16490	NA	unknown function
UHGV-0137775_18	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0137775_19	PHROG	phrog_22984	NA	unknown function
UHGV-0137775_22	UniRef90	UniRef90_A0A2Z4QA14	Immunity protein 58	NA
UHGV-0137775_23	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0137775_23	PHROG	phrog_20388	endolysin	lysis
UHGV-0137775_23	UniRef90	UniRef90_A0A374N1L8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0137775_23	eggNOG-mapper	1203606.HMPREF1526_00253	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0137775_23	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0137775_23	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0137775_23	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0137775_23	Structural annotation	PF01510, PF01476, PF15591, MF_02014, MF_04111, MF_01354, NF008758, NF010723, TIGR00405, COG3023, COG5004, COG2139	NA	NA
UHGV-0137775_24	PHROG	phrog_419	NA	unknown function
UHGV-0137775_24	UniRef90	UniRef90_UPI001E40EA70	PGDYG domain-containing protein	NA
UHGV-0137775_24	eggNOG-mapper	596323.HMPREF0554_0262	NA	NA
UHGV-0137775_24	Structural annotation	PF14083	NA	NA
UHGV-0137775_25	PHROG	phrog_881	holin	lysis
UHGV-0137775_25	UniRef90	UniRef90_UPI001D0692FC	phage holin	NA
UHGV-0137775_25	eggNOG-mapper	476272.RUMHYD_01966	Putative phage holin Dp-1	NA
UHGV-0137775_25	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0137775_25	Structural annotation	PF16938	NA	NA
UHGV-0137775_26	PHROG	phrog_1863	NA	unknown function
UHGV-0137775_26	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0137775_26	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0137775_27	Structural annotation	PF10651, PF01095	NA	NA
UHGV-0137775_28	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0137775_28	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0137775_28	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0137775_28	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0137775_28	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0137775_28	COG	COG4926	Phage-related protein	NA
UHGV-0137775_28	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0137775_29	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0137775_29	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0137775_29	COG	COG4722	Phage-related protein YomH	NA
UHGV-0137775_29	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0137775_30	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0137775_30	eggNOG-mapper	1231377.C426_2221	phage tail tape measure protein	NA
UHGV-0137775_30	COG	COG5412	Phage-related protein	NA
UHGV-0137775_30	Structural annotation	PF20155, COG5281	NA	NA
UHGV-0137775_32	PHROG	phrog_885	major tail protein	tail
UHGV-0137775_32	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0137775_32	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0137775_32	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0137775_33	PHROG	phrog_17405	head protein	head and packaging
UHGV-0137775_33	Structural annotation	PF11367	NA	NA
UHGV-0137775_34	PHROG	phrog_17977	NA	unknown function
UHGV-0137775_34	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0137775_34	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0137775_34	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0137775_34	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0137775_36	PHROG	phrog_247	major head protein	head and packaging
UHGV-0137775_36	UniRef90	UniRef90_A0A3D5I8U9	Phage coat protein	NA
UHGV-0137775_36	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0137775_36	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0137775_36	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0137775_37	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0137775_37	Structural annotation	PF06810	NA	NA
UHGV-0137775_38	UniRef90	UniRef90_U2U1F2	Tail protein, HK97 family	NA
UHGV-0137775_38	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0137775_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0137775_38	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0137775_39	COG	COG1397	ADP-ribosylglycohydrolase	NA
UHGV-0137775_40	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0137775_40	UniRef90	UniRef90_UPI0013EACCE2	minor capsid protein	NA
UHGV-0137775_40	eggNOG-mapper	665950.HMPREF1025_01357	Phage Mu protein F like protein	NA
UHGV-0137775_40	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0137775_40	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0137775_40	COG	COG2369	NA	NA
UHGV-0137775_40	Structural annotation	PF03496, NF040688	NA	NA
UHGV-0137775_41	PHROG	phrog_64	portal protein	head and packaging
UHGV-0137775_41	UniRef90	UniRef90_UPI001AA0B7FF	phage portal protein	NA
UHGV-0137775_41	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0137775_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0137775_41	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0137775_42	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0137775_42	PHROG	phrog_10250	NA	unknown function
UHGV-0137775_42	UniRef90	UniRef90_A0A6B9SRZ6	Terminase large subunit	NA
UHGV-0137775_42	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0137775_42	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0137775_42	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0137775_42	COG	COG1783	Phage terminase large subunit	NA
UHGV-0137775_42	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0137775_43	KOfam	K11392	rsmF; 16S rRNA (cytosine1407-C5)-methyltransferase [EC:2.1.1.178]	NA
UHGV-0137775_43	UniRef90	UniRef90_A0A264Y7R4	SAM_MT_RSMB_NOP domain-containing protein	NA
UHGV-0137775_43	eggNOG-mapper	1002367.HMPREF0673_02547	NOL1 NOP2 sun family protein	NA
UHGV-0137775_43	Pfam	PF01189	16S rRNA methyltransferase RsmB/F	Methyltr_RsmB-F
UHGV-0137775_43	COG	COG0144	16S rRNA C967 or C1407 C5-methylase, RsmB/RsmF family	NA