UHGV-0137878

Genome information

Genome length 25,831 bps

CDS count 37

Completeness 67.50% (medium-quality)

geNomad score 0.9713

Prediction confidence Confident

Genome information
Genome ID	UHGV-0137878
vOTU ID	vOTU-032164
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_371038
BioSample	SAMN03295832
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9713
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.51
Jumbo phage	No

Genome content
Genome length	25,831 bps
GC content	29.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	86.98%
Average CDS length	608.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0137878_2	UniRef90	UniRef90_A0A7X6XBW6	TFIIB-type zinc ribbon-containing protein	NA
UHGV-0137878_2	eggNOG-mapper	546269.HMPREF0389_01375	bacterial-type flagellum-dependent swarming motility	NA
UHGV-0137878_2	COG	COG1645	NA	NA
UHGV-0137878_3	UniRef90	UniRef90_A0A7C6MKH0	SPFH domain-containing protein	NA
UHGV-0137878_3	eggNOG-mapper	1118059.CAHC01000001_gene617	SPFH domain-Band 7 family	NA
UHGV-0137878_3	Pfam	PF13421	SPFH domain-Band 7 family	Band_7_1
UHGV-0137878_3	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0137878_3	COG	COG4260	Membrane protease subunit, stomatin/prohibitin family, contains C-terminal Zn-ribbon domain	NA
UHGV-0137878_4	UniRef90	UniRef90_UPI00082B8CF9	NA	NA
UHGV-0137878_5	eggNOG-mapper	457396.CSBG_01065	NA	NA
UHGV-0137878_6	UniRef90	UniRef90_UPI00115B56BE	helix-turn-helix domain-containing protein	NA
UHGV-0137878_6	eggNOG-mapper	1196322.A370_05750	Helix-turn-helix domain	NA
UHGV-0137878_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0137878_6	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0137878_7	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0137878_7	PHROG	phrog_3502	NA	unknown function
UHGV-0137878_7	UniRef90	UniRef90_UPI001AE48220	winged helix-turn-helix transcriptional regulator	NA
UHGV-0137878_7	eggNOG-mapper	1294142.CINTURNW_4512	LexA DNA binding domain	NA
UHGV-0137878_7	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0137878_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0137878_7	Structural annotation	PF01726, MF_00732, TIGR02944, COG1321	NA	NA
UHGV-0137878_8	eggNOG-mapper	457396.CSBG_01599	NA	NA
UHGV-0137878_9	NCBIFam	NF035925.1	geobacillin-26 family protein	NA
UHGV-0137878_10	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0137878_10	PHROG	phrog_12727	endolysin	lysis
UHGV-0137878_10	UniRef90	UniRef90_UPI001AEB9862	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0137878_10	eggNOG-mapper	1540257.JQMW01000009_gene2672	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0137878_10	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0137878_10	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0137878_10	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0137878_11	PHROG	phrog_1129	holin	lysis
UHGV-0137878_11	UniRef90	UniRef90_UPI0011587C98	phage holin family protein	NA
UHGV-0137878_11	eggNOG-mapper	1499683.CCFF01000017_gene2556	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0137878_11	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0137878_11	Structural annotation	PF16079	NA	NA
UHGV-0137878_12	UniRef90	UniRef90_UPI000DCFCC11	iduronate sulfatase	NA
UHGV-0137878_12	eggNOG-mapper	457396.CSBG_01061	NA	NA
UHGV-0137878_14	PHROG	phrog_16267	NA	unknown function
UHGV-0137878_14	UniRef90	UniRef90_UPI00082DA883	carbohydrate binding domain-containing protein	NA
UHGV-0137878_14	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0137878_14	COG	COG4926	Phage-related protein	NA
UHGV-0137878_15	PHROG	phrog_1401	NA	unknown function
UHGV-0137878_15	UniRef90	UniRef90_UPI0018ABCBD1	NA	NA
UHGV-0137878_15	eggNOG-mapper	1262449.CP6013_3212	NA	NA
UHGV-0137878_15	Structural annotation	PF07761	NA	NA
UHGV-0137878_16	PHROG	phrog_2566	NA	unknown function
UHGV-0137878_16	eggNOG-mapper	1294142.CINTURNW_1040	NA	NA
UHGV-0137878_19	PHROG	phrog_1194	NA	unknown function
UHGV-0137878_19	eggNOG-mapper	1280692.AUJL01000027_gene2149	NA	NA
UHGV-0137878_19	Pfam	PF20458	NA	DUF6711
UHGV-0137878_19	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0137878_20	PHROG	phrog_31409	tail length tape measure protein	tail
UHGV-0137878_20	UniRef90	UniRef90_A0A383RGU3	Putative phage protein	NA
UHGV-0137878_20	eggNOG-mapper	1280689.AUJC01000003_gene976	phage tail tape measure protein	NA
UHGV-0137878_20	COG	COG5283	Phage-related tail protein	NA
UHGV-0137878_20	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0137878_21	PHROG	phrog_2066	NA	unknown function
UHGV-0137878_21	eggNOG-mapper	1280689.AUJC01000003_gene975	NA	NA
UHGV-0137878_22	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0137878_22	UniRef90	UniRef90_UPI0006C0E497	NA	NA
UHGV-0137878_22	eggNOG-mapper	1280689.AUJC01000003_gene974	NA	NA
UHGV-0137878_22	Pfam	PF19591	NA	DUF6096
UHGV-0137878_22	Structural annotation	PF19591	NA	NA
UHGV-0137878_23	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0137878_23	PHROG	phrog_2546	NA	unknown function
UHGV-0137878_23	UniRef90	UniRef90_UPI0006C261E9	TM2 domain-containing protein	NA
UHGV-0137878_23	eggNOG-mapper	1280689.AUJC01000003_gene973	NA	NA
UHGV-0137878_23	Pfam	PF05154	TM2 domain	TM2
UHGV-0137878_23	Structural annotation	PF05154, PF02701, COG3478, COG2314	NA	NA
UHGV-0137878_24	PHROG	phrog_158	major tail protein	tail
UHGV-0137878_24	UniRef90	UniRef90_A0A1B8RSU9	Phage tail protein	NA
UHGV-0137878_24	eggNOG-mapper	1280689.AUJC01000003_gene972	Phage tail tube protein, TTP	NA
UHGV-0137878_24	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0137878_24	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0137878_25	PHROG	phrog_78	tail terminator	connector
UHGV-0137878_25	eggNOG-mapper	1294142.CINTURNW_1695	NA	NA
UHGV-0137878_25	Structural annotation	PF05657	NA	NA
UHGV-0137878_26	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0137878_26	UniRef90	UniRef90_UPI0008369623	HK97 gp10 family phage protein	NA
UHGV-0137878_26	eggNOG-mapper	1280689.AUJC01000003_gene970	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0137878_26	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0137878_26	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0137878_26	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0137878_27	PHROG	phrog_2168	NA	unknown function
UHGV-0137878_27	eggNOG-mapper	1280689.AUJC01000003_gene969	NA	NA
UHGV-0137878_27	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0137878_28	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0137878_28	UniRef90	UniRef90_UPI001158F70C	phage head-tail connector protein	NA
UHGV-0137878_28	eggNOG-mapper	1280689.AUJC01000003_gene968	Phage gp6-like head-tail connector protein	NA
UHGV-0137878_28	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0137878_28	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0137878_29	UniRef90	UniRef90_UPI00096A3CC9	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0137878_29	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0137878_30	PHROG	phrog_422	major head protein	head and packaging
UHGV-0137878_30	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0137878_30	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0137878_31	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0137878_31	UniRef90	UniRef90_UPI0011593FAC	NA	NA
UHGV-0137878_31	eggNOG-mapper	1280689.AUJC01000003_gene966	NA	NA
UHGV-0137878_31	Pfam	PF14265	NA	DUF4355
UHGV-0137878_31	Structural annotation	PF14265	NA	NA
UHGV-0137878_33	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0137878_33	UniRef90	UniRef90_UPI00115A002E	minor capsid protein	NA
UHGV-0137878_33	eggNOG-mapper	1280689.AUJC01000003_gene964	Phage Mu protein F like protein	NA
UHGV-0137878_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0137878_33	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0137878_33	COG	COG2369	NA	NA
UHGV-0137878_33	Structural annotation	PF15542, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0137878_34	eggNOG-mapper	1280692.AUJL01000025_gene2083	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0137878_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0137878_35	UniRef90	UniRef90_UPI00115A1F99	phage portal protein	NA
UHGV-0137878_35	eggNOG-mapper	1280689.AUJC01000003_gene963	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0137878_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0137878_35	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0137878_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0137878_36	eggNOG-mapper	1280689.AUJC01000003_gene1021	NA	NA
UHGV-0137878_37	UniRef90	UniRef90_UPI000B49AA7F	NA	NA
UHGV-0137878_37	Pfam	PF16111	NA	DUF4829
UHGV-0137878_37	COG	COG4219	Signal transducer regulating beta-lactamase production, contains metallopeptidase domain	NA